Your message dated Thu, 12 Oct 2017 04:33:42 +0000 with message-id <e1e2vbm-000buw...@fasolo.debian.org> and subject line Bug#868958: fixed in bcftools 1.5-2 has caused the Debian Bug report #868958, regarding bcftools FTBFS on 32bit: test failures to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 868958: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=868958 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: bcftools Version: 1.4.1-2 Severity: serious https://buildd.debian.org/status/package.php?p=bcftools&suite=sid ... test_vcf_query: /<<PKGBUILDDIR>>/bcftools view -Ob /tmp/f0hqBlggDJ/view.filter.vcf.gz | /<<PKGBUILDDIR>>/bcftools query -f'%POS %CIGAR\n' -i'strlen(CIGAR[*])=4' *** Error in `/<<PKGBUILDDIR>>/bcftools': free(): invalid next size (fast): 0x80abd7a0 *** /bin/bash: line 1: 11930 Done /<<PKGBUILDDIR>>/bcftools view -Ob /tmp/f0hqBlggDJ/view.filter.vcf.gz 11931 Aborted | /<<PKGBUILDDIR>>/bcftools query -f'%POS %CIGAR\n' -i'strlen(CIGAR[*])=4' Non-zero status 134 .. failed ... ... test_vcf_norm: /<<PKGBUILDDIR>>/bcftools norm --no-version -cx -f /<<PKGBUILDDIR>>/test/norm.fa /tmp/f0hqBlggDJ/norm.vcf.gz 2>/dev/null The outputs differ: /<<PKGBUILDDIR>>/test/norm.out /<<PKGBUILDDIR>>/test/norm.out.new .. failed ... test_vcf_norm: /<<PKGBUILDDIR>>/bcftools norm -Ob -cx -f /<<PKGBUILDDIR>>/test/norm.fa /tmp/f0hqBlggDJ/norm.vcf.gz 2>/dev/null | /<<PKGBUILDDIR>>/bcftools view | grep -v ^##bcftools_ The outputs differ: /<<PKGBUILDDIR>>/test/norm.out /<<PKGBUILDDIR>>/test/norm.out.new .. failed ... ... Number of tests: total .. 617 passed .. 614 failed .. 3 Makefile:121: recipe for target 'test' failed make[1]: *** [test] Error 1
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--- Begin Message ---Source: bcftools Source-Version: 1.5-2 We believe that the bug you reported is fixed in the latest version of bcftools, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 868...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Afif Elghraoui <a...@debian.org> (supplier of updated bcftools package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Thu, 12 Oct 2017 00:14:38 -0400 Source: bcftools Binary: bcftools Architecture: source Version: 1.5-2 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@debian.org> Description: bcftools - genomic variant calling and manipulation of VCF/BCF files Closes: 868958 Changes: bcftools (1.5-2) unstable; urgency=low . * Incorporate lost changes from 1.4.1-3 (Closes: #868958) * Update Standards-Version to 4.1.1 * d/control: use build profiles to mark build-dependencies needed only for running tests Checksums-Sha1: abdc6d2b8279866c61931946b6338ddb79ff3ab1 2112 bcftools_1.5-2.dsc 6e29132b3f1c1b59f1d10bf060c0323aaafd6e42 6988 bcftools_1.5-2.debian.tar.xz eaf4f761384520b86dafc40d0167b3dc4c5b477a 6693 bcftools_1.5-2_source.buildinfo Checksums-Sha256: 6e559f53d8579e7ba0b54f0bb49aaa84c1f89b91df314b0ada00870cfb2cbb5c 2112 bcftools_1.5-2.dsc 04c06be8e49ca61725f22e4dee657291c7e83a3ae0b0290e2c45962d15dc4f4e 6988 bcftools_1.5-2.debian.tar.xz afddea374383f49610f74786034cddc678581a191c795659308255cc013e3c6b 6693 bcftools_1.5-2_source.buildinfo Files: 5c6ecef713c6d2ecf924c78d2ab31772 2112 science optional bcftools_1.5-2.dsc 4822f33f8650a549f2a3eb4a22d099ff 6988 science optional bcftools_1.5-2.debian.tar.xz a124961b642894d79bc1a3c307ee4416 6693 science optional bcftools_1.5-2_source.buildinfo -----BEGIN PGP SIGNATURE----- iQJEBAEBCAAuFiEE6rcjomb2J+aAVWFfWbIwbzr53cEFAlne7ikQHGFmaWZAZGVi aWFuLm9yZwAKCRBZsjBvOvndwUp8D/0ZqLsUTqY+ieLMrUT+SNbQM5wRah0F67Az 2WBrHmskGNIL/sTQF8TyrN6aE1LHaSfMr6v15w+KodGm7upy3BB8k9w35/gpSOer N1DkCw6v9jb4D/dlxAY+SxDa/RLmUcf/M/atb8+4LprB2IFRxlEdG4AmpDWgmPqS XoC/Zh+2FIJ2+lSrTaJ31vR55UO+z33Z4u8WqDOq9DB9mkg2UlMcxnFQZJbwFfFS oC7Mc7pgddTDx282OtKNXbdUJWJOGusUErUboFgWPp1is+hrbDKx/ueofqNWHWON pJ3lsCQAziXYgA4O5VgaW8KupBaJco0JAJzqcX5pb1EppZH+f/XoIqfqzc4ooal0 nX063wuZFeXsIzMu1cEzfziaCm6B48HJlZ4tC1ujEd2cnLvPB8akQp0UhvkvAb/R yIBEtIIhvXjX5l2pJ2wHaJEfD5nvOO5/bpO1kS3zJCOEsbpMyjNBYVJY8I0YTTrI eB6m4bGD01s2ifOAJgQmeL6cu2gpBoqOBPuzdh7TmYI92/DznZzFExFxcOSoE4A1 OiQUou3GkuAytrJolfx974Tx0yCIY50h33MXmBIOHPqWJXRLfMiqfDvqMaJQ2NaJ T+m+oGjslYwhnoEIt8W2plIxJdtM607O7qgXJqyYzuICCId8G8p+itzOTjzmowne Gvl6jowjAw== =kxLu -----END PGP SIGNATURE-----
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