control: tag -1 help
Hi,
it seems this problem happens in bgzip interface. Is there any known
change to the compression library that is incompatible since
staden-iu-lib was successfully uploaded and built (at least on several
architectures) yesterday.
Any help is welcome
Andreas.
On Tue, Sep 26, 2017 at 12:27:27PM +0300, Adrian Bunk wrote:
> Source: staden-io-lib
> Version: 1.14.9-2
> Severity: serious
>
> https://buildd.debian.org/status/package.php?p=staden-io-lib&suite=sid
>
> ...
> In file included from bgzip.c:56:0:
> bgzip.c: In function 'gzi_index_dump':
> ../io_lib/os.h:127:10: error: invalid operands to binary & (have 'uint64_t *
> {aka long long unsigned int *}' and 'long long int')
> (((x & 0x00000000000000ffLL) << 56) + \
> ^
> ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8'
> #define le_int8(x) iswap_int8((x))
> ^~~~~~~~~~
> bgzip.c:190:16: note: in expansion of macro 'le_int8'
> if (fwrite(le_int8(&n), sizeof(n), 1, idx_f) != 1)
> ^~~~~~~
> ../io_lib/os.h:128:10: error: invalid operands to binary & (have 'uint64_t *
> {aka long long unsigned int *}' and 'long long int')
> ((x & 0x000000000000ff00LL) << 40) + \
> ^
> ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8'
> #define le_int8(x) iswap_int8((x))
> ^~~~~~~~~~
> bgzip.c:190:16: note: in expansion of macro 'le_int8'
> if (fwrite(le_int8(&n), sizeof(n), 1, idx_f) != 1)
> ^~~~~~~
> ../io_lib/os.h:129:10: error: invalid operands to binary & (have 'uint64_t *
> {aka long long unsigned int *}' and 'long long int')
> ((x & 0x0000000000ff0000LL) << 24) + \
> ^
> ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8'
> #define le_int8(x) iswap_int8((x))
> ^~~~~~~~~~
> bgzip.c:190:16: note: in expansion of macro 'le_int8'
> if (fwrite(le_int8(&n), sizeof(n), 1, idx_f) != 1)
> ^~~~~~~
> ../io_lib/os.h:130:10: error: invalid operands to binary & (have 'uint64_t *
> {aka long long unsigned int *}' and 'long long int')
> ((x & 0x00000000ff000000LL) << 8) + \
> ^
> ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8'
> #define le_int8(x) iswap_int8((x))
> ^~~~~~~~~~
> bgzip.c:190:16: note: in expansion of macro 'le_int8'
> if (fwrite(le_int8(&n), sizeof(n), 1, idx_f) != 1)
> ^~~~~~~
> ../io_lib/os.h:131:10: error: invalid operands to binary & (have 'uint64_t *
> {aka long long unsigned int *}' and 'long long int')
> ((x & 0x000000ff00000000LL) >> 8) + \
> ^
> ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8'
> #define le_int8(x) iswap_int8((x))
> ^~~~~~~~~~
> bgzip.c:190:16: note: in expansion of macro 'le_int8'
> if (fwrite(le_int8(&n), sizeof(n), 1, idx_f) != 1)
> ^~~~~~~
> ../io_lib/os.h:132:10: error: invalid operands to binary & (have 'uint64_t *
> {aka long long unsigned int *}' and 'long long int')
> ((x & 0x0000ff0000000000LL) >> 24) + \
> ^
> ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8'
> #define le_int8(x) iswap_int8((x))
> ^~~~~~~~~~
> bgzip.c:190:16: note: in expansion of macro 'le_int8'
> if (fwrite(le_int8(&n), sizeof(n), 1, idx_f) != 1)
> ^~~~~~~
> ../io_lib/os.h:133:10: error: invalid operands to binary & (have 'uint64_t *
> {aka long long unsigned int *}' and 'long long int')
> ((x & 0x00ff000000000000LL) >> 40) + \
> ^
> ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8'
> #define le_int8(x) iswap_int8((x))
> ^~~~~~~~~~
> bgzip.c:190:16: note: in expansion of macro 'le_int8'
> if (fwrite(le_int8(&n), sizeof(n), 1, idx_f) != 1)
> ^~~~~~~
> ../io_lib/os.h:134:10: error: invalid operands to binary & (have 'uint64_t *
> {aka long long unsigned int *}' and 'long long unsigned int')
> ((x & 0xff00000000000000LL) >> 56))
> ^
> ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8'
> #define le_int8(x) iswap_int8((x))
> ^~~~~~~~~~
> bgzip.c:190:16: note: in expansion of macro 'le_int8'
> if (fwrite(le_int8(&n), sizeof(n), 1, idx_f) != 1)
> ^~~~~~~
> ../io_lib/os.h:127:10: error: invalid operands to binary & (have 'uint64_t *
> {aka long long unsigned int *}' and 'long long int')
> (((x & 0x00000000000000ffLL) << 56) + \
> ^
> ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8'
> #define le_int8(x) iswap_int8((x))
> ^~~~~~~~~~
> bgzip.c:193:13: note: in expansion of macro 'le_int8'
> if (fwrite(le_int8(&idx->c_off[i]), sizeof idx->c_off[i], 1, idx_f) != 1)
> ^~~~~~~
> ../io_lib/os.h:128:10: error: invalid operands to binary & (have 'uint64_t *
> {aka long long unsigned int *}' and 'long long int')
> ((x & 0x000000000000ff00LL) << 40) + \
> ^
> ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8'
> #define le_int8(x) iswap_int8((x))
> ^~~~~~~~~~
> bgzip.c:193:13: note: in expansion of macro 'le_int8'
> if (fwrite(le_int8(&idx->c_off[i]), sizeof idx->c_off[i], 1, idx_f) != 1)
> ^~~~~~~
> ../io_lib/os.h:129:10: error: invalid operands to binary & (have 'uint64_t *
> {aka long long unsigned int *}' and 'long long int')
> ((x & 0x0000000000ff0000LL) << 24) + \
> ^
> ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8'
> #define le_int8(x) iswap_int8((x))
> ^~~~~~~~~~
> bgzip.c:193:13: note: in expansion of macro 'le_int8'
> if (fwrite(le_int8(&idx->c_off[i]), sizeof idx->c_off[i], 1, idx_f) != 1)
> ^~~~~~~
> ../io_lib/os.h:130:10: error: invalid operands to binary & (have 'uint64_t *
> {aka long long unsigned int *}' and 'long long int')
> ((x & 0x00000000ff000000LL) << 8) + \
> ^
> ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8'
> #define le_int8(x) iswap_int8((x))
> ^~~~~~~~~~
> bgzip.c:193:13: note: in expansion of macro 'le_int8'
> if (fwrite(le_int8(&idx->c_off[i]), sizeof idx->c_off[i], 1, idx_f) != 1)
> ^~~~~~~
> ../io_lib/os.h:131:10: error: invalid operands to binary & (have 'uint64_t *
> {aka long long unsigned int *}' and 'long long int')
> ((x & 0x000000ff00000000LL) >> 8) + \
> ^
> ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8'
> #define le_int8(x) iswap_int8((x))
> ^~~~~~~~~~
> bgzip.c:193:13: note: in expansion of macro 'le_int8'
> if (fwrite(le_int8(&idx->c_off[i]), sizeof idx->c_off[i], 1, idx_f) != 1)
> ^~~~~~~
> ../io_lib/os.h:132:10: error: invalid operands to binary & (have 'uint64_t *
> {aka long long unsigned int *}' and 'long long int')
> ((x & 0x0000ff0000000000LL) >> 24) + \
> ^
> ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8'
> #define le_int8(x) iswap_int8((x))
> ^~~~~~~~~~
> bgzip.c:193:13: note: in expansion of macro 'le_int8'
> if (fwrite(le_int8(&idx->c_off[i]), sizeof idx->c_off[i], 1, idx_f) != 1)
> ^~~~~~~
> ../io_lib/os.h:133:10: error: invalid operands to binary & (have 'uint64_t *
> {aka long long unsigned int *}' and 'long long int')
> ((x & 0x00ff000000000000LL) >> 40) + \
> ^
> ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8'
> #define le_int8(x) iswap_int8((x))
> ^~~~~~~~~~
> bgzip.c:193:13: note: in expansion of macro 'le_int8'
> if (fwrite(le_int8(&idx->c_off[i]), sizeof idx->c_off[i], 1, idx_f) != 1)
> ^~~~~~~
> ../io_lib/os.h:134:10: error: invalid operands to binary & (have 'uint64_t *
> {aka long long unsigned int *}' and 'long long unsigned int')
> ((x & 0xff00000000000000LL) >> 56))
> ^
> ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8'
> #define le_int8(x) iswap_int8((x))
> ^~~~~~~~~~
> bgzip.c:193:13: note: in expansion of macro 'le_int8'
> if (fwrite(le_int8(&idx->c_off[i]), sizeof idx->c_off[i], 1, idx_f) != 1)
> ^~~~~~~
> ../io_lib/os.h:127:10: error: invalid operands to binary & (have 'uint64_t *
> {aka long long unsigned int *}' and 'long long int')
> (((x & 0x00000000000000ffLL) << 56) + \
> ^
> ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8'
> #define le_int8(x) iswap_int8((x))
> ^~~~~~~~~~
> bgzip.c:195:13: note: in expansion of macro 'le_int8'
> if (fwrite(le_int8(&idx->u_off[i]), sizeof idx->u_off[i], 1, idx_f) != 1)
> ^~~~~~~
> ../io_lib/os.h:128:10: error: invalid operands to binary & (have 'uint64_t *
> {aka long long unsigned int *}' and 'long long int')
> ((x & 0x000000000000ff00LL) << 40) + \
> ^
> ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8'
> #define le_int8(x) iswap_int8((x))
> ^~~~~~~~~~
> bgzip.c:195:13: note: in expansion of macro 'le_int8'
> if (fwrite(le_int8(&idx->u_off[i]), sizeof idx->u_off[i], 1, idx_f) != 1)
> ^~~~~~~
> ../io_lib/os.h:129:10: error: invalid operands to binary & (have 'uint64_t *
> {aka long long unsigned int *}' and 'long long int')
> ((x & 0x0000000000ff0000LL) << 24) + \
> ^
> ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8'
> #define le_int8(x) iswap_int8((x))
> ^~~~~~~~~~
> bgzip.c:195:13: note: in expansion of macro 'le_int8'
> if (fwrite(le_int8(&idx->u_off[i]), sizeof idx->u_off[i], 1, idx_f) != 1)
> ^~~~~~~
> ../io_lib/os.h:130:10: error: invalid operands to binary & (have 'uint64_t *
> {aka long long unsigned int *}' and 'long long int')
> ((x & 0x00000000ff000000LL) << 8) + \
> ^
> ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8'
> #define le_int8(x) iswap_int8((x))
> ^~~~~~~~~~
> bgzip.c:195:13: note: in expansion of macro 'le_int8'
> if (fwrite(le_int8(&idx->u_off[i]), sizeof idx->u_off[i], 1, idx_f) != 1)
> ^~~~~~~
> ../io_lib/os.h:131:10: error: invalid operands to binary & (have 'uint64_t *
> {aka long long unsigned int *}' and 'long long int')
> ((x & 0x000000ff00000000LL) >> 8) + \
> ^
> ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8'
> #define le_int8(x) iswap_int8((x))
> ^~~~~~~~~~
> bgzip.c:195:13: note: in expansion of macro 'le_int8'
> if (fwrite(le_int8(&idx->u_off[i]), sizeof idx->u_off[i], 1, idx_f) != 1)
> ^~~~~~~
> ../io_lib/os.h:132:10: error: invalid operands to binary & (have 'uint64_t *
> {aka long long unsigned int *}' and 'long long int')
> ((x & 0x0000ff0000000000LL) >> 24) + \
> ^
> ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8'
> #define le_int8(x) iswap_int8((x))
> ^~~~~~~~~~
> bgzip.c:195:13: note: in expansion of macro 'le_int8'
> if (fwrite(le_int8(&idx->u_off[i]), sizeof idx->u_off[i], 1, idx_f) != 1)
> ^~~~~~~
> ../io_lib/os.h:133:10: error: invalid operands to binary & (have 'uint64_t *
> {aka long long unsigned int *}' and 'long long int')
> ((x & 0x00ff000000000000LL) >> 40) + \
> ^
> ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8'
> #define le_int8(x) iswap_int8((x))
> ^~~~~~~~~~
> bgzip.c:195:13: note: in expansion of macro 'le_int8'
> if (fwrite(le_int8(&idx->u_off[i]), sizeof idx->u_off[i], 1, idx_f) != 1)
> ^~~~~~~
> ../io_lib/os.h:134:10: error: invalid operands to binary & (have 'uint64_t *
> {aka long long unsigned int *}' and 'long long unsigned int')
> ((x & 0xff00000000000000LL) >> 56))
> ^
> ../io_lib/os.h:185:20: note: in expansion of macro 'iswap_int8'
> #define le_int8(x) iswap_int8((x))
> ^~~~~~~~~~
> bgzip.c:195:13: note: in expansion of macro 'le_int8'
> if (fwrite(le_int8(&idx->u_off[i]), sizeof idx->u_off[i], 1, idx_f) != 1)
> ^~~~~~~
> Makefile:1019: recipe for target 'libstaden_read_la-bgzip.lo' failed
> make[3]: *** [libstaden_read_la-bgzip.lo] Error 1
>
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