Your message dated Tue, 29 Aug 2017 22:07:57 +0000
with message-id <e1dmoft-0008fd...@fasolo.debian.org>
and subject line Bug#866547: fixed in python-biomaj3 3.0.20-2
has caused the Debian Bug report #866547,
regarding python-biomaj3 encoding issue during build
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
866547: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=866547
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:python-biomaj3
Version: 3.0.20-1
Severity: serious
Justification: fails to build from source (but built successfully in the past)
Now FTBFS. See attached log.
: pybuild base:184: python3.6 setup.py clean
Traceback (most recent call last):
File "setup.py", line 18, in <module>
README = f.read()
File "/usr/lib/python3.6/encodings/ascii.py", line 26, in decode
return codecs.ascii_decode(input, self.errors)[0]
UnicodeDecodeError: 'ascii' codec can't decode byte 0xe2 in position 1781:
ordinal not in range(128)
E: pybuild pybuild:283: clean: plugin distutils failed with: exit code=1:
python3.6 setup.py clean
dh_auto_clean: pybuild --clean --test-nose -i python{version} -p 3.6 3.5
returned exit code 13
debian/rules:28: recipe for target 'clean' failed
Scott K
I: Logging to
/home/kitterma/pbuilder/sid_result/python-biomaj3_3.0.20-1_amd64.build
I: using fakeroot in build.
I: Current time: Thu Jun 29 21:25:22 EDT 2017
I: pbuilder-time-stamp: 1498785922
I: Building the build Environment
I: extracting base tarball [/home/kitterma/pbuilder/sid-base.tgz]
I: creating local configuration
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for
details.
I: mounting /proc filesystem
I: mounting /run/shm filesystem
I: mounting /dev/pts filesystem
I: policy-rc.d already exists
I: Obtaining the cached apt archive contents
I: Installing the build-deps
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-ma...@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by
pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper (>= 9), dh-python, python-all, python-setuptools,
python-mock, python-nose, python-pymongo, python-tabulate, python-ldap3,
python-bcrypt, python-future, python-elasticsearch, python-pycurl,
python-drmaa, python3-all, python3-setuptools, python3-mock, python3-nose,
python3-pymongo, python3-tabulate, python3-ldap3, python3-bcrypt,
python3-future, python3-elasticsearch, python3-pycurl
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in
'/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
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Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring
anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper (>= 9); however:
Package debhelper is not installed.
pbuilder-satisfydepends-dummy depends on dh-python; however:
Package dh-python is not installed.
pbuilder-satisfydepends-dummy depends on python-all; however:
Package python-all is not installed.
pbuilder-satisfydepends-dummy depends on python-setuptools; however:
Package python-setuptools is not installed.
pbuilder-satisfydepends-dummy depends on python-mock; however:
Package python-mock is not installed.
pbuilder-satisfydepends-dummy depends on python-nose; however:
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pbuilder-satisfydepends-dummy depends on python-pymongo; however:
Package python-pymongo is not installed.
pbuilder-satisfydepends-dummy depends on python-tabulate; however:
Package python-tabulate is not installed.
pbuilder-satisfydepends-dummy depends on python-ldap3; however:
Package python-ldap3 is not installed.
pbuilder-satisfydepends-dummy depends on python-bcrypt; however:
Package python-bcrypt is not installed.
pbuilder-satisfydepends-dummy depends on python-future; however:
Package python-future is not installed.
pbuilder-satisfydepends-dummy depends on python-elasticsearch; however:
Package python-elasticsearch is not installed.
pbuilder-satisfydepends-dummy depends on python-pycurl; however:
Package python-pycurl is not installed.
pbuilder-satisfydepends-dummy depends on python-drmaa; however:
Package python-drmaa is not installed.
pbuilder-satisfydepends-dummy depends on python3-all; however:
Package python3-all is not installed.
pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
Package python3-setuptools is not installed.
pbuilder-satisfydepends-dummy depends on python3-mock; however:
Package python3-mock is not installed.
pbuilder-satisfydepends-dummy depends on python3-nose; however:
Package python3-nose is not installed.
pbuilder-satisfydepends-dummy depends on python3-pymongo; however:
Package python3-pymongo is not installed.
pbuilder-satisfydepends-dummy depends on python3-tabulate; however:
Package python3-tabulate is not installed.
pbuilder-satisfydepends-dummy depends on python3-ldap3; however:
Package python3-ldap3 is not installed.
pbuilder-satisfydepends-dummy depends on python3-bcrypt; however:
Package python3-bcrypt is not installed.
pbuilder-satisfydepends-dummy depends on python3-future; however:
Package python3-future is not installed.
pbuilder-satisfydepends-dummy depends on python3-elasticsearch; however:
Package python3-elasticsearch is not installed.
pbuilder-satisfydepends-dummy depends on python3-pycurl; however:
Package python3-pycurl is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
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pbuilder-satisfydepends-dummy is already installed at the requested version
(0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version
(0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a}
debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} file{a}
gettext{a} gettext-base{a} groff-base{a} intltool-debian{a}
libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libcurl3-gnutls{a} libexpat1{a}
libffi6{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libgnutls30{a}
libgssapi-krb5-2{a} libhogweed4{a} libicu57{a} libidn2-0{a} libjs-jquery{a}
libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a}
libkrb5-3{a} libkrb5support0{a} libldap-2.4-2{a} libldap-common{a}
libmagic-mgc{a} libmagic1{a} libmpdec2{a} libnettle6{a} libnghttp2-14{a}
libp11-kit0{a} libpipeline1{a} libpsl5{a} libpython-stdlib{a}
libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-stdlib{a}
libpython3.5-minimal{a} libpython3.5-stdlib{a} libpython3.6-minimal{a}
libpython3.6-stdlib{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a}
libsigsegv2{a} libssh2-1{a} libssl1.1{a} libtasn1-6{a} libtool{a} libun
istring0{a} libxml2{a} m4{a} man-db{a} mime-support{a} po-debconf{a} python{a}
python-all{a} python-bcrypt{a} python-bson{a} python-cffi-backend{a}
python-configparser{a} python-drmaa{a} python-elasticsearch{a}
python-funcsigs{a} python-future{a} python-ldap3{a} python-minimal{a}
python-mock{a} python-nose{a} python-pbr{a} python-pkg-resources{a}
python-pyasn1{a} python-pycurl{a} python-pymongo{a} python-setuptools{a}
python-six{a} python-tabulate{a} python-urllib3{a} python2.7{a}
python2.7-minimal{a} python3{a} python3-all{a} python3-bcrypt{a}
python3-bson{a} python3-cffi-backend{a} python3-elasticsearch{a}
python3-future{a} python3-ldap3{a} python3-minimal{a} python3-mock{a}
python3-nose{a} python3-pbr{a} python3-pkg-resources{a} python3-pyasn1{a}
python3-pycurl{a} python3-pymongo{a} python3-setuptools{a} python3-six{a}
python3-tabulate{a} python3-urllib3{a} python3.5{a} python3.5-minimal{a}
python3.6{a} python3.6-minimal{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl
libglib2.0-data libltdl-dev libmail-sendmail-perl libsasl2-modules lynx-cur
publicsuffix python-bson-ext python-cryptography python-gridfs python-idna
python-ipaddress python-openssl python-pymongo-ext python3-bson-ext
python3-gridfs python3-pymongo-ext shared-mime-info wget xdg-user-dirs xml-core
0 packages upgraded, 115 newly installed, 0 to remove and 0 not upgraded.
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No schema files found: doing nothing.
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Reading package lists...
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-> Finished parsing the build-deps
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Reading state information...
The following additional packages will be installed:
libfakeroot
The following NEW packages will be installed:
fakeroot libfakeroot
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/131 kB of archives.
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I: Copying back the cached apt archive contents
I: Copying source file
I: copying [python-biomaj3_3.0.20-1.dsc]
I: copying [./python-biomaj3_3.0.20.orig.tar.xz]
I: copying [./python-biomaj3_3.0.20-1.debian.tar.gz]
I: Extracting source
dpkg-source: warning: extracting unsigned source package
(python-biomaj3_3.0.20-1.dsc)
dpkg-source: info: extracting python-biomaj3 in python-biomaj3-3.0.20
dpkg-source: info: unpacking python-biomaj3_3.0.20.orig.tar.xz
dpkg-source: info: unpacking python-biomaj3_3.0.20-1.debian.tar.gz
I: Building the package
I: Running cd tmp/buildd/*/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin"
dpkg-buildpackage -us -uc -rfakeroot
dpkg-buildpackage: info: source package python-biomaj3
dpkg-buildpackage: info: source version 3.0.20-1
dpkg-buildpackage: info: source distribution UNRELEASED
dpkg-buildpackage: info: source changed by Scott Kitterman <sc...@kitterman.com>
dpkg-source --before-build python-biomaj3-3.0.20
dpkg-buildpackage: info: host architecture amd64
fakeroot debian/rules clean
dh clean --with python2,python3 --buildsystem=pybuild
dh_testdir -O--buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:184: python2.7 setup.py clean
running clean
removing '/tmp/buildd/python-biomaj3-3.0.20/.pybuild/pythonX.Y_2.7/build' (and
everything under it)
'build/bdist.linux-amd64' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
I: pybuild base:184: python3.6 setup.py clean
Traceback (most recent call last):
File "setup.py", line 18, in <module>
README = f.read()
File "/usr/lib/python3.6/encodings/ascii.py", line 26, in decode
return codecs.ascii_decode(input, self.errors)[0]
UnicodeDecodeError: 'ascii' codec can't decode byte 0xe2 in position 1781:
ordinal not in range(128)
E: pybuild pybuild:283: clean: plugin distutils failed with: exit code=1:
python3.6 setup.py clean
dh_auto_clean: pybuild --clean --test-nose -i python{version} -p 3.6 3.5
returned exit code 13
debian/rules:28: recipe for target 'clean' failed
make: *** [clean] Error 25
dpkg-buildpackage: error: fakeroot debian/rules clean gave error exit status 2
E: Failed autobuilding of package
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: cleaning the build env
I: removing directory /var/cache/pbuilder/build//28945 and its subdirectories
--- End Message ---
--- Begin Message ---
Source: python-biomaj3
Source-Version: 3.0.20-2
We believe that the bug you reported is fixed in the latest version of
python-biomaj3, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 866...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated python-biomaj3 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Tue, 29 Aug 2017 22:49:03 +0200
Source: python-biomaj3
Binary: python-biomaj3 python3-biomaj3 biomaj3-commons
Architecture: source all
Version: 3.0.20-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
biomaj3-commons - biological data-bank updater
python-biomaj3 - biological data-bank updater (Python 2)
python3-biomaj3 - biological data-bank updater (Python 3)
Closes: 866547 866548 871160
Changes:
python-biomaj3 (3.0.20-2) unstable; urgency=medium
.
* Team upload.
.
[ Andreas Tille ]
* Fix python3 encoding
Closes: #866547, #871160
* debhelper 10
* Standards-Version: 4.1.0 (no changes needed)
* Add missing debhelper token in postrm
* cme fix dpkg-control (to fix overlong lines in description)
.
[ Scott Kitterman ]
* Prune unneeded -dev build-depends
Closes: #866548
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biomaj3-commons_3.0.20-2_all.deb
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python3-biomaj3_3.0.20-2_all.deb
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