Your message dated Mon, 28 Aug 2017 13:51:48 +0000 with message-id <e1dmksc-000e9i...@fasolo.debian.org> and subject line Bug#853677: fixed in t-coffee 11.00.8cbe486-6 has caused the Debian Bug report #853677, regarding t-coffee: ftbfs with GCC-7 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 853677: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=853677 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: src:t-coffee Version: 11.00.8cbe486-5 Severity: normal Tags: sid buster User: debian-...@lists.debian.org Usertags: ftbfs-gcc-7 Please keep this issue open in the bug tracker for the package it was filed for. If a fix in another package is required, please file a bug for the other package (or clone), and add a block in this package. Please keep the issue open until the package can be built in a follow-up test rebuild. The package fails to build in a test rebuild on at least amd64 with gcc-7/g++-7, but succeeds to build with gcc-6/g++-6. The severity of this report may be raised before the buster release. There is no need to fix this issue in time for the stretch release. The full build log can be found at: http://people.debian.org/~doko/logs/gcc7-20170126/t-coffee_11.00.8cbe486-5_unstable_gcc7.log The last lines of the build log are at the end of this report. To build with GCC 7, either set CC=gcc-7 CXX=g++-7 explicitly, or install the gcc, g++, gfortran, ... packages from experimental. apt-get -t=experimental install g++ Common build failures are new warnings resulting in build failures with -Werror turned on, or new/dropped symbols in Debian symbols files. For other C/C++ related build failures see the porting guide at http://gcc.gnu.org/gcc-7/porting_to.html [...] In file included from /usr/include/stdio.h:938:0, from util_lib/util_constraints_list.c:29: /usr/include/x86_64-linux-gnu/bits/stdio2.h:34:43: note: format output between 6 and 4503 bytes into a destination of size 1000 __bos (__s), __fmt, __va_arg_pack ()); ^ util_lib/util_constraints_list.c:611:9: warning: '%s' directive writing between 0 and 500 bytes into a region of size 100 [-Wformat-overflow=] Job_TC* method2job_list ( char *method_name,Sequence *S, char *weight, char *lib_list, Distance_matrix *DM, Constraint_list *CL) ^~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:938:0, from util_lib/util_constraints_list.c:29: /usr/include/x86_64-linux-gnu/bits/stdio2.h:34:43: note: format output between 1 and 501 bytes into a destination of size 100 __bos (__s), __fmt, __va_arg_pack ()); ^ util_lib/util_constraints_list.c:611:9: warning: '%s' directive writing between 0 and 500 bytes into a region of size 100 [-Wformat-overflow=] Job_TC* method2job_list ( char *method_name,Sequence *S, char *weight, char *lib_list, Distance_matrix *DM, Constraint_list *CL) ^~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:938:0, from util_lib/util_constraints_list.c:29: /usr/include/x86_64-linux-gnu/bits/stdio2.h:34:43: note: format output between 1 and 501 bytes into a destination of size 100 __bos (__s), __fmt, __va_arg_pack ()); ^ util_lib/util_constraints_list.c:611:9: warning: '%s' directive writing between 0 and 999 bytes into a region of size 499 [-Wformat-overflow=] Job_TC* method2job_list ( char *method_name,Sequence *S, char *weight, char *lib_list, Distance_matrix *DM, Constraint_list *CL) ^~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:938:0, from util_lib/util_constraints_list.c:29: /usr/include/x86_64-linux-gnu/bits/stdio2.h:34:43: note: format output between 6 and 4503 bytes into a destination of size 1000 __bos (__s), __fmt, __va_arg_pack ()); ^ Linking... g++: error: util_lib/aln_convertion_util.o: No such file or directory g++: error: util_lib/util.o: No such file or directory makefile:8: recipe for target 't_coffee' failed make[2]: [t_coffee] Error 1 (ignored) make[2]: Leaving directory '/<<PKGBUILDDIR>>/t_coffee_source' make[1]: Leaving directory '/<<PKGBUILDDIR>>' dh_auto_test -O--sourcedirectory=t_coffee_source create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --sourcedirectory=t_coffee_source dh_testroot -O--sourcedirectory=t_coffee_source dh_prep -O--sourcedirectory=t_coffee_source dh_auto_install -O--sourcedirectory=t_coffee_source dh_install -O--sourcedirectory=t_coffee_source dh_install: Cannot find (any matches for) "t_coffee_source/t_coffee" (tried in "." and "debian/tmp") dh_install: t-coffee missing files: t_coffee_source/t_coffee dh_install: missing files, aborting debian/rules:13: recipe for target 'binary' failed make: *** [binary] Error 2 dpkg-buildpackage: error: fakeroot debian/rules binary gave error exit status 2
--- End Message ---
--- Begin Message ---Source: t-coffee Source-Version: 11.00.8cbe486-6 We believe that the bug you reported is fixed in the latest version of t-coffee, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 853...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated t-coffee package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Mon, 28 Aug 2017 15:27:17 +0200 Source: t-coffee Binary: t-coffee t-coffee-examples Architecture: source Version: 11.00.8cbe486-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: t-coffee - Multiple Sequence Alignment t-coffee-examples - annotated examples for the use of T-Coffee Closes: 853677 Changes: t-coffee (11.00.8cbe486-6) unstable; urgency=medium . * Standards-Version: 4.1.0 (no changes needed) * Fix some string assignments which fail build with gcc-7 Closes: #853677 * d/rules: do not parse d/changelog Checksums-Sha1: 0b2e588e8c792911bcf51bac4cf748630bc3298e 2173 t-coffee_11.00.8cbe486-6.dsc 8796fb83ea82b3231ff34541c5b4a5e7bd72af57 15896 t-coffee_11.00.8cbe486-6.debian.tar.xz ed236ec44c03af6c11c4f6cda02bd13cef93c33a 12871 t-coffee_11.00.8cbe486-6_source.buildinfo Checksums-Sha256: 74c83c8f7591b6fcb62aa3148db2315600d49bd61f3880f805a5691f3ca31c4e 2173 t-coffee_11.00.8cbe486-6.dsc 842506d55d33cb9127d2413d89e71fd5de8815e35b2b9466983cca226c74d508 15896 t-coffee_11.00.8cbe486-6.debian.tar.xz 815d6fc61eeece21fccb5c41a7d517ddc993d231fc19c47d95bb1020e00db214 12871 t-coffee_11.00.8cbe486-6_source.buildinfo Files: f0adcda1455b5fa44a11b35a44d28b5b 2173 science optional t-coffee_11.00.8cbe486-6.dsc 69882760c18bf8517bf30cf8efccac9e 15896 science optional t-coffee_11.00.8cbe486-6.debian.tar.xz 155e68a0444b432a3c454e8d63db9033 12871 science optional t-coffee_11.00.8cbe486-6_source.buildinfo -----BEGIN PGP SIGNATURE----- iQJCBAEBCgAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlmkGsMOHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtGp0Q//TjRAZpt4vQl4lX38b5YhtyglU6eKiMkim4ae MsVR/UCntUtbDXrknep7HjQgDWA4KlspsKBCsZCAidVvumqY0+g57Vg2UmcKpmzi 4CwXnIufkWZPQgkMOHLioVL684o5FCjpHFhF6welc/T6tChUtB4DDZLZQohxlRI8 xblhb4WuYoEFxdZGtAENCsQPRBue3XLC+pxeYQ45d2++ypzvc/bUG6XVxLT3AWs1 Uw+BVKZq3vlZ9XW6z5pqbSwowqdcliD4/zsR9Q8HUYvyUGCbBUN1lx2P0V4arcav 8P2oRgWAm/GVIS5zJozqR/K/tHXS1nGLc4V7m6tGP1GFwXCL66vA7WMdyQh+Ndei SbBxq/SUexOYD80drKcO6zBpM+LZGcECpDFCRnPenW2/vPxncnPf+XWJJw8RFF7q Uaddh+aIY4DJpAvco9vDEl/wl7upQjyquNVYXx4uPr0TuKSV2G0oRkZtw19o3c+g NZ5w82LHk5HewasLedsh61xHYwAnRP6qoNeS2P5j7IXecB8skSE3ixBFBizQRcHd IFctDOu+zPyeKKyKyLjecbc94+AU2EnEqFli0aKYW5Jie8rTQbuv7BFK3gULC1qd Plm9mcwe5OqoaDk6VpSymQ+yreXDc7AOeMJ/YjhQjukw0siZGm9iMwouudV1X+Bf qfBzMKY= =b0gq -----END PGP SIGNATURE-----
--- End Message ---
