Your message dated Thu, 24 Aug 2017 21:10:38 +0000
with message-id <e1dkzog-0003g1...@fasolo.debian.org>
and subject line Bug#861684: fixed in r-cran-randomfields 3.1.50-1
has caused the Debian Bug report #861684,
regarding r-base: R packages uploaded to Debian before 14 April 2017 that use
.C or .Fortran fail to find objects
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
861684: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=861684
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: r-base
Version: 3.4.0-1
Severity: normal
With current R, R packages built for Debian before the upload of R
3.3.3.20170413-1
on 14 April that use .C or .Fortran do no work properly, because the functions
calling .C or .Fortran do not find the compiled objects.
Example packages are r-cran-spatial and r-cran-kernsmooth.
An example session in a fresh Debian sid chroot:
> library(spatial)
> example(surf.gls)
srf.gl> library(MASS) # for eqscplot
srf.gl> data(topo, package="MASS")
srf.gl> topo.kr <- surf.gls(2, expcov, topo, d=0.7)
Error in surf.gls(2, expcov, topo, d = 0.7) : object 'VR_frset' not found
The relevant NEWS entry from R is
* Packages which register native routines for .C or .Fortran need
to be re-installed for this version (unless installed with
R-devel SVN revision r72375 or later).
Packages compiled locally can simply be rebuilt using
update.packages(lib.loc="/usr/local/lib/R/site-library", checkBuilt=TRUE)
However the packages provided by Debian packages are installed in a directory
only writable by privileged users.
Cheers,
Johannes
-- System Information:
Debian Release: 9.0
APT prefers unstable
APT policy: (500, 'unstable')
Architecture: amd64
(x86_64)
Kernel: Linux 4.9.0-0.bpo.2-amd64 (SMP w/8 CPU cores)
Locale: LANG=C, LC_CTYPE=C (charmap=ANSI_X3.4-1968)
Shell: /bin/sh linked to /usr/bin/dash
Init: unable to detect
Versions of packages r-base depends on:
ii r-base-core 3.4.0-1
ii r-recommended 3.4.0-1
Versions of packages r-base recommends:
ii r-base-html 3.4.0-1
ii r-doc-html 3.4.0-1
Versions of packages r-base suggests:
pn ess <none>
pn r-doc-info | r-doc-pdf <none>
-- no debconf information
--- End Message ---
--- Begin Message ---
Source: r-cran-randomfields
Source-Version: 3.1.50-1
We believe that the bug you reported is fixed in the latest version of
r-cran-randomfields, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 861...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated r-cran-randomfields
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Thu, 24 Aug 2017 22:24:04 +0200
Source: r-cran-randomfields
Binary: r-cran-randomfields
Architecture: source
Version: 3.1.50-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
r-cran-randomfields - GNU R simulation and analysis of random fields
Closes: 861684
Changes:
r-cran-randomfields (3.1.50-1) unstable; urgency=medium
.
* New upstream version
Closes: #861684
* Standards-Version: 4.1.0 (no changes needed)
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