Your message dated Thu, 24 Aug 2017 19:34:55 +0000 with message-id <e1dkxu3-000iex...@fasolo.debian.org> and subject line Bug#853681: fixed in theseus 3.3.0-6 has caused the Debian Bug report #853681, regarding theseus: ftbfs with GCC-7 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 853681: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=853681 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: src:theseus Version: 3.3.0-5 Severity: normal Tags: sid buster User: debian-...@lists.debian.org Usertags: ftbfs-gcc-7 Please keep this issue open in the bug tracker for the package it was filed for. If a fix in another package is required, please file a bug for the other package (or clone), and add a block in this package. Please keep the issue open until the package can be built in a follow-up test rebuild. The package fails to build in a test rebuild on at least amd64 with gcc-7/g++-7, but succeeds to build with gcc-6/g++-6. The severity of this report may be raised before the buster release. There is no need to fix this issue in time for the stretch release. The full build log can be found at: http://people.debian.org/~doko/logs/gcc7-20170126/theseus_3.3.0-5_unstable_gcc7.log The last lines of the build log are at the end of this report. To build with GCC 7, either set CC=gcc-7 CXX=g++-7 explicitly, or install the gcc, g++, gfortran, ... packages from experimental. apt-get -t=experimental install g++ Common build failures are new warnings resulting in build failures with -Werror turned on, or new/dropped symbols in Debian symbols files. For other C/C++ related build failures see the porting guide at http://gcc.gnu.org/gcc-7/porting_to.html [...] a - EVD_dist.o a - exp_dist.o a - gamma_dist.o a - invchisqr_dist.o a - invgamma_dist.o a - invgauss_dist.o a - laplace_dist.o a - logistic_dist.o a - lognormal_dist.o a - maxwell_dist.o a - negbinom_dist.o a - normal_dist.o a - pareto_dist.o a - rayleigh_dist.o a - recinvgauss_dist.o a - rice_dist.o a - uniform_dist.o a - vonmises_dist.o a - weibull_dist.o ranlib libdistfit.a make[2]: Leaving directory '/<<PKGBUILDDIR>>/libdistfit' ( cd libDLTutils; make && cp libDLTutils.a ../lib ) make[2]: Entering directory '/<<PKGBUILDDIR>>/libDLTutils' /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -pthread -c DLTutils.c ar -rvs libDLTutils.a DLTutils.o ar: creating libDLTutils.a a - DLTutils.o ranlib libDLTutils.a make[2]: Leaving directory '/<<PKGBUILDDIR>>/libDLTutils' ( cd libmsa; make && cp libmsa.a ../lib ) make[2]: Entering directory '/<<PKGBUILDDIR>>/libmsa' /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -pthread -c msa.c msa.c: In function 'MSAfixnamesphy': msa.c:629:36: error: may write a terminating nul past the end of the destination [-Werror=format-overflow=] sprintf(digit, "%-d", cnt); ~~~^ msa.c:629:17: note: format output between 2 and 11 bytes into a destination of size 10 sprintf(digit, "%-d", cnt); ^~~~~~~~~~~~~~~~~~~~~~~~~~ cc1: all warnings being treated as errors Makefile:10: recipe for target 'msa.o' failed make[2]: *** [msa.o] Error 1 make[2]: Leaving directory '/<<PKGBUILDDIR>>/libmsa' Makefile:33: recipe for target 'lmsa' failed make[1]: *** [lmsa] Error 2 make[1]: Leaving directory '/<<PKGBUILDDIR>>' dh_auto_build: make -j1 returned exit code 2 debian/rules:15: recipe for target 'build' failed make: *** [build] Error 2 dpkg-buildpackage: error: debian/rules build gave error exit status 2
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--- Begin Message ---Source: theseus Source-Version: 3.3.0-6 We believe that the bug you reported is fixed in the latest version of theseus, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 853...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated theseus package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Thu, 24 Aug 2017 15:31:38 +0200 Source: theseus Binary: theseus theseus-examples Architecture: source amd64 all Version: 3.3.0-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: theseus - superimpose macromolecules using maximum likelihood theseus-examples - superimpose macromolecules using maximum likelihood (examples) Closes: 853681 Changes: theseus (3.3.0-6) unstable; urgency=medium . * Move packaging from SVN to Git * debhelper 10 * Standards-Version: 4.1.0 (no changes needed) * Use DEB_SOURCE in d/rules * Increase string length of string buffer to build with gcc-7 Closes: #853681 * Hardening Checksums-Sha1: c110849322512e39c97911a0a8f3e4690db1fe02 2044 theseus_3.3.0-6.dsc cac3e5bd2da56a5f8910614cd45ed3712b4950d1 10884 theseus_3.3.0-6.debian.tar.xz d3b3ae5092c5433a7b43381cc653c63e31fe19b4 14448 theseus-dbgsym_3.3.0-6_amd64.deb d5bc7f4c2f9fbf2fa064f9c6fc0f3fa20f007cab 20818822 theseus-examples_3.3.0-6_all.deb 670dede2ca2e73f21404b0945cf050d0047305c3 5956 theseus_3.3.0-6_amd64.buildinfo b4e21192eae9f7aac2e05d1df5d19cdcf6658706 424366 theseus_3.3.0-6_amd64.deb Checksums-Sha256: 7a6e4779690a047ad12e5a1a6bca2d214acc5113b5a449ae45ff6ca84b91cada 2044 theseus_3.3.0-6.dsc c4de226232346299cd818906c33501647cc2dd2e1121ba21c1460075b8ab64fb 10884 theseus_3.3.0-6.debian.tar.xz 509d560f0e0c3b40469f961582fec131aa0a3907af0fe4226ab6b2ff4a0ff821 14448 theseus-dbgsym_3.3.0-6_amd64.deb 94b889f461ffa80c41c1239123b56ea8c56356cf21faa38ef0b4568af37c30a6 20818822 theseus-examples_3.3.0-6_all.deb 5278c4d7cd3b944402dee04730a5816ccb4b56e14c466606c7cfa8a41ed0d100 5956 theseus_3.3.0-6_amd64.buildinfo 3b2e3a409a6f8e4493980658aca845abca8789b695c0af7107cdea7121f227cf 424366 theseus_3.3.0-6_amd64.deb Files: a79aa31a2e3f798e026fc9d67cab4cf7 2044 science optional theseus_3.3.0-6.dsc ddc367a52b6e6f5aa95bdc26aee30655 10884 science optional theseus_3.3.0-6.debian.tar.xz bced8f8ee11ed32eb96a7586b70b621f 14448 debug extra theseus-dbgsym_3.3.0-6_amd64.deb 30ba959cea6f0986d08ff3226e0214b2 20818822 science optional theseus-examples_3.3.0-6_all.deb f95d80af01d8f542d50492ec9aad6eb7 5956 science optional theseus_3.3.0-6_amd64.buildinfo 0921df2fc678eb86e7aa5c33c882ce63 424366 science optional theseus_3.3.0-6_amd64.deb -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlmfJKURHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHKAw//Zw1a0sesVANh64avDWl+uEyhZbj+mJXk mTFfcdXpNkwF80duKsMDv9JyOSH4GIoR7tC7u9gOnvO094d2r7A5INu85Xp4Rw0i 1HNPr/Vjnix/9Xl4rIbY3XUIK8EvUrjlrQrJPxPYLdjn6wpq33gtC/TDAEqXvw2r DYXtTfZKv56aBk2DYa3ZVftF6fnIW0X+2jny/h3y6qQemmRczW3Lhx5hsfL2SdI+ 4AYFQfGLGnye3gAAW6ZKEqgKYpndvpteL98aEDIscmbzgfiPt2Fzv7TBzh+Fl42q YNvlIZzB1rLWusAKlvdSzriE1eK87PrNnYt19kbG13MujD4z1GCrzxhMMcQiL1PC MDvCVGFCWLfwxWiZckU5S2OOwQoOxeafVdoj77nSAsu5B3u9T8sefV50IOoztyWN 81N5jE5PrDV9Yyg3dhegROlQEhFQSjtkWImXcdr5a7ein2djiD46F+2+L3ind+XV WQ857ioky9ZuCnXcb8pBFOky/FHeBtuIgz7Dsa3kTPqrLps16C34M0rv+LEREwjX U8ndlnO1UxQRqVhNxpKYEnPPG37PDxzDgn2UaBUexK89Fl0qO4TRUdPE2D4W2e/A JYNxgSV5Xq/Qg5NGvuZAyS+dovEaqnv0q4T013MozBu5R626/bQJ69AZ1TJNtFZ2 x6VMt33XnZE= =Uo7H -----END PGP SIGNATURE-----
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