Your message dated Wed, 23 Aug 2017 18:53:01 +0000 with message-id <e1dkalx-000a1x...@fasolo.debian.org> and subject line Bug#871333: fixed in r-bioc-rtracklayer 1.36.4-1 has caused the Debian Bug report #871333, regarding r-bioc-rtracklayer: FTBFS: Error: package or namespace load failed for 'rtracklayer' in dyn.load(file, DLLpath = DLLpath, ...): to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 871333: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=871333 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: r-bioc-rtracklayer Version: 1.34.1-1 Severity: serious Tags: buster sid User: debian...@lists.debian.org Usertags: qa-ftbfs-20170807 qa-ftbfs Justification: FTBFS on amd64 Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > make[1]: Entering directory '/<<PKGBUILDDIR>>/src' > make[1]: Leaving directory '/<<PKGBUILDDIR>>/src' > installing to > /<<PKGBUILDDIR>>/debian/r-bioc-rtracklayer/usr/lib/R/site-library/rtracklayer/libs > ** R > ** data > ** demo > ** inst > ** preparing package for lazy loading > Warning: undefined slot classes in definition of "UCSCTableQuery": > track(class "characterORNULL"), table(class "characterORNULL"), > outputType(class "characterORNULL"), NAMES(class "characterORNULL"), > intersectTrack(class "characterORNULL") > Warning: undefined slot classes in definition of "Bed15TrackLine": > expNames(class "characterORNULL") > Creating a generic function for 'offset' from package 'stats' in package > 'rtracklayer' > Creating a generic function from function 'uri' in package 'rtracklayer' > ** help > *** installing help indices > ** building package indices > ** installing vignettes > ** testing if installed package can be loaded > Error: package or namespace load failed for 'rtracklayer' in dyn.load(file, > DLLpath = DLLpath, ...): > unable to load shared object > '/<<PKGBUILDDIR>>/debian/r-bioc-rtracklayer/usr/lib/R/site-library/rtracklayer/libs/rtracklayer.so': > > /<<PKGBUILDDIR>>/debian/r-bioc-rtracklayer/usr/lib/R/site-library/rtracklayer/libs/rtracklayer.so: > undefined symbol: append_string_to_CharAEAE > Error: loading failed > Execution halted > ERROR: loading failed > * removing > '/<<PKGBUILDDIR>>/debian/r-bioc-rtracklayer/usr/lib/R/site-library/rtracklayer' > dh_auto_install: R CMD INSTALL -l > /<<PKGBUILDDIR>>/debian/r-bioc-rtracklayer/usr/lib/R/site-library --clean . > "--built-timestamp='Sun, 04 Dec 2016 21:53:17 +0100'" returned exit code 1 > debian/rules:4: recipe for target 'binary' failed > make: *** [binary] Error 25 The full build log is available from: http://aws-logs.debian.net/2017/08/07/r-bioc-rtracklayer_1.34.1-1_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.
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--- Begin Message ---Source: r-bioc-rtracklayer Source-Version: 1.36.4-1 We believe that the bug you reported is fixed in the latest version of r-bioc-rtracklayer, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 871...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated r-bioc-rtracklayer package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Wed, 23 Aug 2017 19:43:41 +0200 Source: r-bioc-rtracklayer Binary: r-bioc-rtracklayer Architecture: source Version: 1.36.4-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: r-bioc-rtracklayer - GNU R interface to genome browsers and their annotation tracks Closes: 871333 Changes: r-bioc-rtracklayer (1.36.4-1) unstable; urgency=medium . * New upstream version Closes: #871333 * Standards-Version: 4.0.1 (no changes needed) * Remove unused lintian override Checksums-Sha1: 673abe6aa0ad0603fac753b26fc42394328beb6f 2230 r-bioc-rtracklayer_1.36.4-1.dsc f10ad577f2a4c6e6e2a4efdc8983978e712fed59 1378713 r-bioc-rtracklayer_1.36.4.orig.tar.gz 0a1d8ccbd14a6db4c2db2cdcbd6169f63600dc28 26348 r-bioc-rtracklayer_1.36.4-1.debian.tar.xz ad6c6f2bfdfdb748ac3916985242d724a221af94 15320 r-bioc-rtracklayer_1.36.4-1_source.buildinfo Checksums-Sha256: 0e2375a63fc645b87d3d735b74891147ffef39d26ac624eabbf6abe826015433 2230 r-bioc-rtracklayer_1.36.4-1.dsc d73940cc35997d3375b599a0de304d360cb5fb2e2765499109617002760e1814 1378713 r-bioc-rtracklayer_1.36.4.orig.tar.gz 2e7ecced1c4de373d8c9af83db3e800aa16e62709bf6778555ca050402e90134 26348 r-bioc-rtracklayer_1.36.4-1.debian.tar.xz 4afbd5ca9622aaa4abaacfbb629fdf757f894b407a01fb7f6a5c5f9dfee1d0a4 15320 r-bioc-rtracklayer_1.36.4-1_source.buildinfo Files: 06ab142dc27bab1dffce6ca0fb4fba14 2230 gnu-r optional r-bioc-rtracklayer_1.36.4-1.dsc 8036fd7f79d4a9cb3e0218a2a4e02f19 1378713 gnu-r optional r-bioc-rtracklayer_1.36.4.orig.tar.gz e8a6f3b70193cb89f67257c5b053ab9e 26348 gnu-r optional r-bioc-rtracklayer_1.36.4-1.debian.tar.xz ac9189cf9aa52a7bff16e6f056f63dce 15320 gnu-r optional r-bioc-rtracklayer_1.36.4-1_source.buildinfo -----BEGIN PGP SIGNATURE----- iQJCBAEBCAAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlmdx1sOHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtF4HA//RXNeddQ2KqacQkP22aOQHNIiBoTcTqyyNVHX kcEi7J6arqiNYcbzuzgqRXkZZp7CbswxF8n99gx+6YAmExJGr0kgekEfI05aymVy CxOC63Kz/JjbQrVZmviNV21LZBnAAOquRomNNB0m72/xcjivgoCo8EyU4Syt6csK ADt1gDj7iBGFOskD3bgMP+7+l1gTEPnNeiylON0odf0+wJ81B7fjMMQiZfGwTh5u BxOell7mu2Q3Vg7Kco9znxSbxFS4JAWuvaXMJTwiC+6Z626f0Mi+gxpN1Php0vRe ybKNpW49b7Zth9kGI/S89GrC8EeYGkBcOVs4hbURbhNtzf4wtsWHBoc4IoZFKX37 pFDxlfjtc7TpWDHRqjKGLj/h0J8lprP+q1VJbYn+ixYyJ1Rsh67hV/YK3JRiCaDF S0WKvG/+1HIwlByVJV+haNO+t0dqfZnUcf2W49CDWRsxx+doeMNOc++0GChY5V8I MHvM/WBEBFnS6u5w2c6PxOZtA5m4t12yvTBp5+UX3E3TaSbkTr8uXk7aPgpJKFhL drRCfUCEl5ErD5skoMgD3mbe/+nMQZNrdO/euXpANEzBWr8HEyL6Ku52DZLsli/d HMCC6wyI95iw0sJIdKBw0SHeiPEX7dfO7UceeOMnVfHr8o2dbaU8d4EBF/jnwigH mv+6v6E= =rpbk -----END PGP SIGNATURE-----
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