Your message dated Thu, 30 Mar 2017 11:48:49 +0000
with message-id <e1ctyzn-000e0r...@fasolo.debian.org>
and subject line Bug#859090: fixed in mapdamage 2.0.6+dfsg-2
has caused the Debian Bug report #859090,
regarding mapdamage has incomplete patch to not always find seqtk
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
859090: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=859090
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: mapdamage
Severity: grave
Tags: patch
Justification: renders package unusable
Hi,
when Nadiya Sitdykova tried to create an autopkgtest for mapdamage it
turned out that the patch to find Debian packaged seqtk is incomplete.
A working patch can be found in packaging Git and will be uploaded soon.
Kind regards
Andreas.
-- System Information:
Debian Release: 8.7
APT prefers stable-updates
APT policy: (500, 'stable-updates'), (500, 'stable')
Architecture: amd64 (x86_64)
Kernel: Linux 3.16.0-4-amd64 (SMP w/1 CPU core)
Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
--- End Message ---
--- Begin Message ---
Source: mapdamage
Source-Version: 2.0.6+dfsg-2
We believe that the bug you reported is fixed in the latest version of
mapdamage, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 859...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Nadiya Sitdykova <rovensk...@gmail.com> (supplier of updated mapdamage package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Thu, 23 Mar 2017 21:34:41 -0700
Source: mapdamage
Binary: mapdamage
Architecture: source all
Version: 2.0.6+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Nadiya Sitdykova <rovensk...@gmail.com>
Description:
mapdamage - tracking and quantifying damage patterns in ancient DNA sequences
Closes: 848326 859090 859091
Changes:
mapdamage (2.0.6+dfsg-2) unstable; urgency=medium
.
* Team upload
.
[ Andreas Tille ]
* Spelling
.
[ Nadiya Sitdykova ]
* Add simple tests for examples
* Move pysam dependency from tests/control to control as it's needed
not only for test, but for package
* Add test checking stdin redirect
* Add simple test to demonstrate the problems with installing
r-cran-rcppgsl package
* Edit path to seqtk in composition.py
Closes: #859090
* Fix typo in tests/control
* Add patch to fix quantile call to remove NA and NaNs
* Add dependency providing liblapack.so and libblas.so
Closes: #859091
* Add file with reference containing all types of nucleotides
* Add information how to check R libraries and what to do in case of errors
to README.test
* Provide tests for examples from documentation
Closes: #848326
* Fixed typo in README.test
Checksums-Sha1:
2f2d102bc888e5123243e27350074cd2c823467a 2090 mapdamage_2.0.6+dfsg-2.dsc
a77076da7aa059f69c41fdb7c898f4c1eedcb239 6928
mapdamage_2.0.6+dfsg-2.debian.tar.xz
373003c4959296c5c84b60cb09661187b3f54325 38800 mapdamage_2.0.6+dfsg-2_all.deb
b9633ab8a3dbdd144d71597b02ebff511b71fe66 6027
mapdamage_2.0.6+dfsg-2_amd64.buildinfo
Checksums-Sha256:
154f033951fd2dd83e89b49cbc4f3aa7852ea4df1ec412c1a1d103039d1cd597 2090
mapdamage_2.0.6+dfsg-2.dsc
4fe17e581cc172d8feff429be2caed6a29db9ee777f03011dddbc1366c672cb8 6928
mapdamage_2.0.6+dfsg-2.debian.tar.xz
006f25238ce436c5c0b595bdb03cca26464f6beeb6c4c847ec78a358c5c38e9b 38800
mapdamage_2.0.6+dfsg-2_all.deb
4a934164110d0ae8f3fa7a43b51ca982bb3da369b3e5c042358c61770c84f458 6027
mapdamage_2.0.6+dfsg-2_amd64.buildinfo
Files:
62f591c0487e038c18cbb5c35ffe34f5 2090 science optional
mapdamage_2.0.6+dfsg-2.dsc
b7af5a220b8f7549c14e4ff4c21c91bd 6928 science optional
mapdamage_2.0.6+dfsg-2.debian.tar.xz
aff21d92226b52602d776d344588dc7e 38800 science optional
mapdamage_2.0.6+dfsg-2_all.deb
f901d23ec7c23b93aad78d869e0f270d 6027 science optional
mapdamage_2.0.6+dfsg-2_amd64.buildinfo
-----BEGIN PGP SIGNATURE-----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=69N+
-----END PGP SIGNATURE-----
--- End Message ---
