Your message dated Thu, 23 Feb 2017 10:55:08 +0000
with message-id <e1cgr3e-000btb...@fasolo.debian.org>
and subject line Bug#855881: fixed in freecontact 1.0.21-5
has caused the Debian Bug report #855881,
regarding freecontact: FTBFS in stretch (devlibs error)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
855881: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=855881
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:freecontact
Version: 1.0.21-4
Severity: serious
Dear maintainer:
I tried to build this package in stretch with "dpkg-buildpackage -A"
but it failed:
--------------------------------------------------------------------------------
[...]
debian/rules build-indep
dh build-indep --parallel --with bash-completion --with autoreconf
dh_testdir -i -O--parallel
dh_update_autotools_config -i -O--parallel
dh_autoreconf -i -O--parallel
libtoolize: putting auxiliary files in '.'.
libtoolize: copying file './ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
configure.ac:29: installing './compile'
[... snipped ...]
/bin/bash ../libtool --mode=install /usr/bin/install -c freecontact
'/<<PKGBUILDDIR>>/debian/tmp/usr/bin'
libtool: warning: '../lib/libfreecontact.la' has not been installed in
'/usr/lib/x86_64-linux-gnu'
libtool: install: /usr/bin/install -c .libs/freecontact
/<<PKGBUILDDIR>>/debian/tmp/usr/bin/freecontact
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/share/doc/freecontact/examples'
/usr/bin/install -c -m 644 demo_1000.aln demo_1000.psicov.50
PF00071_v25_999.fa PF00071_v25_999.xml PF00071_v25_999.evfold.50
PF00071_v25_999.evfold.50.xml
'/<<PKGBUILDDIR>>/debian/tmp/usr/share/doc/freecontact/examples'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/share/freecontact'
/usr/bin/install -c -m 644 BioXSD-1.1.xsd freecontact_input.xsd
freecontact_output.xsd '/<<PKGBUILDDIR>>/debian/tmp/usr/share/freecontact'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/share/freecontact'
/usr/bin/install -c a2m2aln '/<<PKGBUILDDIR>>/debian/tmp/usr/share/freecontact'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1'
/usr/bin/install -c -m 644 freecontact.1
'/<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[3]: Entering directory '/<<PKGBUILDDIR>>'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
d-shlibmove --commit \
--multiarch \
--exclude-la \
--devunversioned \
--override s/libblas3-dev/libblas-dev/ \
--v5 \
--override s/libgfortran3-dev/libgfortran-5-dev/ \
--override s/libquadmath0-dev/libgcc-5-dev/ \
--override s/liblapack3-dev/liblapack-dev/ \
--movedev debian/tmp/usr/include/* usr/include \
debian/tmp/usr/lib/*/*.so
Library package automatic movement utility
--> libblas-dev package exists.
devlibs error: There is no package matching [libgcc-5-dev] and noone provides
it, please report bug to d-shlibs maintainer
devlibs error: There is no package matching [libgfortran-5-dev] and noone
provides it, please report bug to d-shlibs maintainer
--> liblapack-dev package exists.
debian/rules:29: recipe for target 'override_dh_install' failed
make[1]: *** [override_dh_install] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules:11: recipe for target 'binary-indep' failed
make: *** [binary-indep] Error 2
dpkg-buildpackage: error: fakeroot debian/rules binary-indep gave error exit
status 2
--------------------------------------------------------------------------------
This may or may not be a bug in d-shlibs, but I'm not sure, so I'm
reporting this initially against freecontact, the failing package,
and I'm including Jonas in X-Debbugs-Cc.
The failure also happens here in testing at least:
https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/freecontact.html
so I assume it should be easy to reproduce on current stretch.
If this is really a bug in one of the build-depends (for example,
d-shlibs), please use reassign and then "affects src:freecontact",
so that this is still visible in the page for this package.
Thanks.
--- End Message ---
--- Begin Message ---
Source: freecontact
Source-Version: 1.0.21-5
We believe that the bug you reported is fixed in the latest version of
freecontact, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 855...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated freecontact package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Thu, 23 Feb 2017 11:26:26 +0100
Source: freecontact
Binary: freecontact libfreecontact0v5 libfreecontact-dev libfreecontact0-dbg
libfreecontact-doc
Architecture: source amd64 all
Version: 1.0.21-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
freecontact - fast protein contact predictor
libfreecontact-dev - fast protein contact predictor library - development files
libfreecontact-doc - documentation for libfreecontact
libfreecontact0-dbg - debugging symbols for libfreecontact
libfreecontact0v5 - fast protein contact predictor library
Closes: 855881
Changes:
freecontact (1.0.21-5) unstable; urgency=medium
.
[ Adrian Heine ]
* gcc-6 transition (Closes: #855881).
Checksums-Sha1:
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Files:
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341932f5eaa71741a657a91909694ca5 6860 science optional
freecontact_1.0.21-5.debian.tar.xz
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freecontact_1.0.21-5_amd64.buildinfo
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freecontact_1.0.21-5_amd64.deb
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libfreecontact-dev_1.0.21-5_amd64.deb
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libfreecontact-doc_1.0.21-5_all.deb
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libfreecontact0-dbg_1.0.21-5_amd64.deb
5a4b30bc7714616c5d5d469abc6db07f 70076 libs optional
libfreecontact0v5_1.0.21-5_amd64.deb
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--- End Message ---