Your message dated Mon, 30 Jan 2017 17:03:37 +0000
with message-id <e1cyfmf-000e2p...@fasolo.debian.org>
and subject line Bug#853211: fixed in phyml 3:3.2.0+dfsg-5
has caused the Debian Bug report #853211,
regarding phyml: Fails to use mpi
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
853211: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=853211
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: phyml
Severity: grave
Justification: renders package unusable
Hi,
pyhml-mpi ends up with error
*** An error occurred in MPI_Recv
*** on communicator MPI_COMM_WORLD
*** MPI_ERR_RANK: invalid rank
*** MPI_ERRORS_ARE_FATAL: your MPI job will now abort
The cause is a broken wrapper lacking an mpirun call.
Kind regards
Andreas.
-- System Information:
Debian Release: 8.7
APT prefers stable-updates
APT policy: (500, 'stable-updates'), (500, 'stable')
Architecture: amd64 (x86_64)
Kernel: Linux 3.16.0-4-amd64 (SMP w/1 CPU core)
Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
Versions of packages phyml depends on:
ii libc6 2.19-18+deb8u7
phyml recommends no packages.
phyml suggests no packages.
--- End Message ---
--- Begin Message ---
Source: phyml
Source-Version: 3:3.2.0+dfsg-5
We believe that the bug you reported is fixed in the latest version of
phyml, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 853...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated phyml package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Mon, 30 Jan 2017 17:34:56 +0100
Source: phyml
Binary: phyml
Architecture: source
Version: 3:3.2.0+dfsg-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
phyml - Phylogenetic estimation using Maximum Likelihood
Closes: 853211
Changes:
phyml (3:3.2.0+dfsg-5) unstable; urgency=medium
.
* Fix wrapper to correctly use mpirun
Closes: #853211
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--- End Message ---
