Your message dated Fri, 13 Jan 2017 09:08:42 +0000 with message-id <e1crxqk-000fxa...@fasolo.debian.org> and subject line Bug#851219: fixed in sra-sdk 2.8.1+dfsg-2 has caused the Debian Bug report #851219, regarding sra-toolkit: /usr/bin/kget is already shipped by the package kget to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 851219: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=851219 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: sra-toolkit Version: 2.8.1+dfsg-1 Severity: serious User: debian...@lists.debian.org Usertags: piuparts Hi, during a test with piuparts I noticed your package failed to install because it tries to overwrite other packages files. >From the attached log (scroll to the bottom...): Selecting previously unselected package sra-toolkit. Preparing to unpack .../22-sra-toolkit_2.8.1+dfsg-1_amd64.deb ... Unpacking sra-toolkit (2.8.1+dfsg-1) ... dpkg: error processing archive /tmp/apt-dpkg-install-jiWh8D/22-sra-toolkit_2.8.1+dfsg-1_amd64.deb (--unpack): trying to overwrite '/usr/bin/kget', which is also in package kget 4:16.08.0-2 dpkg-deb: error: subprocess paste was killed by signal (Broken pipe) cheers, Andreas
kget=4%16.08.0-2_sra-toolkit=2.8.1+dfsg-1.log.gz
Description: application/gzip
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--- Begin Message ---Source: sra-sdk Source-Version: 2.8.1+dfsg-2 We believe that the bug you reported is fixed in the latest version of sra-sdk, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 851...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated sra-sdk package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Fri, 13 Jan 2017 09:23:03 +0100 Source: sra-sdk Binary: sra-toolkit Architecture: source amd64 Version: 2.8.1+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: sra-toolkit - utilities for the NCBI Sequence Read Archive Closes: 851219 Changes: sra-sdk (2.8.1+dfsg-2) unstable; urgency=medium . * Deal with name space conflict with kget Closes: #851219 Checksums-Sha1: a8fb467319b9867f871d9ed6bb55a515ae2b3004 2137 sra-sdk_2.8.1+dfsg-2.dsc 26a96d29263a696c16a725dc2ab761c09c6c1709 12684 sra-sdk_2.8.1+dfsg-2.debian.tar.xz 9f4b902a4e4331cdbb217f0afb297384b5667a6a 5807 sra-sdk_2.8.1+dfsg-2_amd64.buildinfo 1dde5961229102952d67cb8abaa51f348a515a1a 3084468 sra-toolkit-dbgsym_2.8.1+dfsg-2_amd64.deb f951e24754919956fba989d1206cd4c8cdb74c28 1489408 sra-toolkit_2.8.1+dfsg-2_amd64.deb Checksums-Sha256: 92e064180a7b51b2b619666b3f4168df63006f17c7f9235ac08769e9eaaf1968 2137 sra-sdk_2.8.1+dfsg-2.dsc 62cd16f4e966744682eec4419c5b0d453fb217e80472281e712ff9c9a80f68cb 12684 sra-sdk_2.8.1+dfsg-2.debian.tar.xz 9d5cb5f20c0fac4d2b668858ce4835b6a4b1d4657d06d8f52ddfc3b45ca0cba2 5807 sra-sdk_2.8.1+dfsg-2_amd64.buildinfo 1f458f689071e3a3aa3933d7492d23af023e7ad5f9bbe9199bc76f7b59ab8186 3084468 sra-toolkit-dbgsym_2.8.1+dfsg-2_amd64.deb 930904686240efbb03a308241ec5dc55e792eed90a32343e195979630b9a5068 1489408 sra-toolkit_2.8.1+dfsg-2_amd64.deb Files: d8fb0b2efab99c654ee91f6800b96884 2137 science optional sra-sdk_2.8.1+dfsg-2.dsc c3f926e61c01229ac3fd0264eee60506 12684 science optional sra-sdk_2.8.1+dfsg-2.debian.tar.xz f435df31c863a66fbb989637af040cfc 5807 science optional sra-sdk_2.8.1+dfsg-2_amd64.buildinfo ae0b9195999b84296ee9062cba6dbb19 3084468 debug extra sra-toolkit-dbgsym_2.8.1+dfsg-2_amd64.deb 551e90848ee72ca71888c3b6708997da 1489408 science optional sra-toolkit_2.8.1+dfsg-2_amd64.deb -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlh4jywRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFstQ//VGJkfRjc4mmQp3W2hbLccbehcFgkWexO 3CqOwtBosdQcBQR7fgafaXp81/iA/OmA3jFCg1JmqJlI3CKEIUchvf2hhEqRt2Cb lmt7ibD3LfvLdx2ns0Gx5iCjAIPA2Vca2ps/EjDI23phoTnqI7nSx9FPy32Kz4lt /1k1DvyvF8iywk9JdUYWl/DREOUvc5kYCvROHfJz0Fu4t822O9S/Oxn1H3FwQ4Hn oac6j0ZGAbJOFIGubokpG6kHUVyo2cJ12SiCmurphXSa9iTPNaa8EGQ3wDmEQLIK aI0SxFq6EAGPDpXqnoSHOCbJUG1Wi+of2xsZ0/w3iTTobtRnImdA2nEBZ6NTt0Nv gGzvu07LXLwIbA62vt4YL/hWbKTbT5uDul3nR2x7siYgouS99lHmI7MJQ6QIsagh UUJmzSJ/tGc7Gav+BsRGAtwPFrkhkZm4tmOOcmrcSHOU3grnYBCgJhGz3hyeRz2m UZBmDHP4hSMQ27RNXam4KT/nUOZzjouhpE0mIcW2IGsG8MDKcnRAiK4cH79YBw+u 37WjwQG5Ftivhv/y39NL6/FqUhjdBF7NX+8iNO6T7knHfDbns0AhLG8goUbrJz+q EObcCrIs6LAwyPoSHsPvE+jIvCSpxuMykeHjYJ0l3gDjO+CvsJB/nHeas5Ce+6LT tXF6cI48cM4= =YYZC -----END PGP SIGNATURE-----
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