Your message dated Fri, 06 Jan 2017 07:33:44 +0000 with message-id <e1cpp20-000ftz...@fasolo.debian.org> and subject line Bug#802706: fixed in petsc 3.7.4+dfsg1-9 has caused the Debian Bug report #802706, regarding slepc: FTBFS: Unable to link with PETSc to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 802706: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=802706 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: slepc Version: 3.6.1.dfsg1-1 Severity: serious Justification: fails to build from source (but built successfully in the past) Builds of slepc in minimal environments (such as on the autobuilders) have been failing with errors of the form Checking environment... done Checking PETSc installation... ERROR: Unable to link with PETSc ERROR: See "installed-i386-linux-gnu-real/lib/slepc/conf/configure.log" file for details debian/rules:149: recipe for target 'override_dh_auto_install' failed make[1]: *** [override_dh_auto_install] Error 1 make[1]: Leaving directory '/«PKGBUILDDIR»' debian/rules:101: recipe for target 'binary-arch' failed make: *** [binary-arch] Error 2 dpkg-buildpackage: error: fakeroot debian/rules binary-arch gave error exit status 2 I was able to reproduce the problem on a porterbox (amd64, as it happens), and found the issue to be that it was explicitly linking against libraries that were neither direct nor indirect build dependencies: mpicxx -Wl,-z,relro -Wl,--no-as-needed -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -o checklink checklink.o -L/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/lib -L/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/lib -lpetsc_real -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lumfpack -lamd -lcholmod -lklu -L/usr/lib -lHYPRE_utilities -lHYPRE_struct_mv -lHYPRE_struct_ls -lHYPRE_sstruct_mv -lHYPRE_sstruct_ls -lHYPRE_IJ_mv -lHYPRE_parcsr_ls -lsuperlu -lscalapack-openmpi -llapack -lblas -lssl -lcrypto -lptesmumps -lptscotch -lptscotcherr -lfftw3 -lfftw3_mpi -lm -L/usr/lib/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpi_f90 -lmpi_f77 -lgfortran -lm -lgfortran -lm -lquadmath -lm -lmpi_cxx -lstdc++ -L/usr/lib/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lmpi -lhwloc -lgcc_s -lpthread -ldl /usr/bin/ld: cannot find -lssl /usr/bin/ld: cannot find -lcrypto /usr/bin/ld: cannot find -lgfortran Could you please take a look? Given that Debian builds PETSc as a shared library, it shouldn't be necessary to list any other libraries on the command line. However, if the build system makes that hard to avoid, please compensate by listing libgfortran-5-dev and libssl-dev in Build-Depends. (It's unfortunate that there's no generic libgfortran-dev, though I suppose you could list gfortran.) Either way, please confirm with pbuilder or the like that there aren't any further errors in minimal environments. Thanks!
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--- Begin Message ---Source: petsc Source-Version: 3.7.4+dfsg1-9 We believe that the bug you reported is fixed in the latest version of petsc, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 802...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Drew Parsons <dpars...@debian.org> (supplier of updated petsc package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Fri, 06 Jan 2017 13:10:01 +0800 Source: petsc Binary: libpetsc3.7-dev libpetsc3.7.4-dev petsc-dev libpetsc3.7.4 libpetsc3.7.4-dbg petsc3.7.4-doc libpetsc-complex-3.7-dev libpetsc-complex-3.7.4-dev libpetsc-complex-3.7.4 libpetsc-complex-3.7.4-dbg Architecture: source Version: 3.7.4+dfsg1-9 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers <debian-science-maintain...@lists.alioth.debian.org> Changed-By: Drew Parsons <dpars...@debian.org> Description: libpetsc-complex-3.7-dev - Static libraries, shared links, header files for PETSc libpetsc-complex-3.7.4 - Shared libraries for version 3.7 of PETSc with Complex Numbers libpetsc-complex-3.7.4-dbg - Debugging libraries for PETSc libpetsc-complex-3.7.4-dev - Static libraries, shared links, header files for PETSc libpetsc3.7-dev - Static libraries, shared links, header files for PETSc libpetsc3.7.4 - Shared libraries for version 3.7 of PETSc libpetsc3.7.4-dbg - Debugging libraries for PETSc libpetsc3.7.4-dev - Static libraries, shared links, header files for PETSc petsc-dev - Virtual package depending on latest PETSc development package petsc3.7.4-doc - Documentation and examples for PETSc Closes: 802706 Changes: petsc (3.7.4+dfsg1-9) unstable; urgency=medium . * Binary -dev packages Depends: libhdf5-mpi-dev. Needed since -lhdf5 is now added to PETSc pkgconfig flags. Closes: #802706. Checksums-Sha1: 4f6251e6d0a9456cddf4ca78a753c0c8dbafe507 3051 petsc_3.7.4+dfsg1-9.dsc a633da5f08973bc7f0e37c7529755bcf629d1ca3 35936 petsc_3.7.4+dfsg1-9.debian.tar.xz Checksums-Sha256: 47ebdab179b5a9d290d4c19deb83b4bbccc18cebca0383afa3d0be5bb64a2096 3051 petsc_3.7.4+dfsg1-9.dsc 9ced9e4bca48a3e5ba75a8ef4d90a0786a5c663b1f771defc7d9a960d93e4b12 35936 petsc_3.7.4+dfsg1-9.debian.tar.xz Files: 65c976a8384f206f5e9207e9bc3dd80c 3051 devel extra petsc_3.7.4+dfsg1-9.dsc 24001e94842ced662e4d055e10fa59e5 35936 devel extra petsc_3.7.4+dfsg1-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEI8mpPlhYGekSbQo2Vz7x5L1aAfoFAlhvNb8UHGRwYXJzb25z QGRlYmlhbi5vcmcACgkQVz7x5L1aAfoaaxAAnMZiZZKaM5y7pTre+5SnwEdb6WUk dq9N8SzsAdaNCMaHk1fWoirfg89kn5dn09i8UYXcEF1KA9GbB6k2k+dW/1zTHglg kuNiuNAZOiE141aiM/jHZ4iXiy877eZzv/S8C8cWtvYYpXCtksuDKPluym2aVqn+ nX4lIv9/DqA9m26iBljDIYQz+S19quQiy6+rEVyqnVe6L7YKShux7RhW10IKhVvw XZmT3zJLeCacwHjNdqC8x076C6LN65bY9oqpA6L04KVwwk1nAxNjsDpQPyZsol/Q JWNw8bAa77/9yGXlMEWESTL+lqAUoZkSnB8hAZ9JOtv/0v+KiZfuje8csKwFNhAO 9rTa3l0MC5s7o8O9WsMM0wZZjBL+gfrlShLdpCH/s2OhFcDe8AQXmee4yRpNDwjj 6zCo8dBkARUpcPEdIt6nGql/cIgFbjHCN3J2m+JSVnHGalr6skSNA/gPFktWohaM KWmJWEj93YuXCEtFGkSWKvq/udlznBLPYrsuFp8SBKZ6edXKBsa4ZJa1wDmuN9U9 lfJv1k2tBsmKsPARFLzcd4iY73x5krDd0noSr0iz3VCIECfpgYo/IF8phY5qzOhK sRpYiaIM2Xba8d8PtPxlaR/vSJLU+dJxZhL0zKZ8VOcnFPesO4YEHlHmptfWoKmD iFOnzjZ5QiOaEuY= =0xoZ -----END PGP SIGNATURE-----
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