Your message dated Wed, 21 Dec 2016 09:50:46 +0000
with message-id <e1cjdxq-0002gg...@fasolo.debian.org>
and subject line Bug#848394: fixed in metastudent-data 2.0.1-2
has caused the Debian Bug report #848394,
regarding metastudent-data: FTBFS: Error: Argument "dbtype". Mandatory value is
missing: `String, `nucl', `prot''
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
848394: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=848394
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: metastudent-data
Version: 2.0.1-1
Severity: serious
Justification: fails to build from source
User: reproducible-bui...@lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-Cc: reproducible-b...@lists.alioth.debian.org
Dear Maintainer,
metastudent-data fails to build from source in unstable/amd64:
[…]
dh_auto_build -O--parallel
dh_auto_build: Compatibility levels before 9 are deprecated (level 8 in use)
make -j9
make[1]: Entering directory '«BUILDDIR»'
mkdir -p dataset_201401/BPO/ && \
formatdb -i "dataset_201401/BPO/goasp.fasta" -n
"dataset_201401/BPO/goasp.fasta" && rm -f formatdb.log
mkdir -p dataset_201401/MFO/ && \
formatdb -i "dataset_201401/MFO/goasp.fasta" -n
"dataset_201401/MFO/goasp.fasta" && rm -f formatdb.log
mkdir -p dataset_201401/CCO/ && \
formatdb -i "dataset_201401/CCO/goasp.fasta" -n
"dataset_201401/CCO/goasp.fasta" && rm -f formatdb.log
USAGE
makeblastdb [-h] [-help] [-in input_file] [-input_type type]
-dbtype molecule_type [-title database_title] [-parse_seqids]
[-hash_index] [-mask_data mask_data_files] [-mask_id mask_algo_ids]
[-mask_desc mask_algo_descriptions] [-gi_mask]
[-gi_mask_name gi_based_mask_names] [-out database_name]
[-max_file_sz number_of_bytes] [-logfile File_Name] [-taxid TaxID]
[-taxid_map TaxIDMapFile] [-version]
DESCRIPTION
Application to create BLAST databases, version 2.5.0+
Use '-help' to print detailed descriptions of command line arguments
========================================================================
Error: Argument "dbtype". Mandatory value is missing: `String, `nucl',
`prot''
Error: (CArgException::eNoArg) Argument "dbtype". Mandatory value is
missing: `String, `nucl', `prot''
Program failed, try executing the command manually.
Makefile:606: recipe for target 'dataset_201401/MFO/goasp.fasta.psq' failed
make[1]: *** [dataset_201401/MFO/goasp.fasta.psq] Error 1
make[1]: *** Waiting for unfinished jobs....
USAGE
makeblastdb [-h] [-help] [-in input_file] [-input_type type]
-dbtype molecule_type [-title database_title] [-parse_seqids]
[-hash_index] [-mask_data mask_data_files] [-mask_id mask_algo_ids]
[-mask_desc mask_algo_descriptions] [-gi_mask]
[-gi_mask_name gi_based_mask_names] [-out database_name]
[-max_file_sz number_of_bytes] [-logfile File_Name] [-taxid TaxID]
[-taxid_map TaxIDMapFile] [-version]
DESCRIPTION
Application to create BLAST databases, version 2.5.0+
Use '-help' to print detailed descriptions of command line arguments
========================================================================
Error: Argument "dbtype". Mandatory value is missing: `String, `nucl',
`prot''
Error: (CArgException::eNoArg) Argument "dbtype". Mandatory value is
missing: `String, `nucl', `prot''
Program failed, try executing the command manually.
Makefile:606: recipe for target 'dataset_201401/BPO/goasp.fasta.psq' failed
make[1]: *** [dataset_201401/BPO/goasp.fasta.psq] Error 1
USAGE
makeblastdb [-h] [-help] [-in input_file] [-input_type type]
-dbtype molecule_type [-title database_title] [-parse_seqids]
[-hash_index] [-mask_data mask_data_files] [-mask_id mask_algo_ids]
[-mask_desc mask_algo_descriptions] [-gi_mask]
[-gi_mask_name gi_based_mask_names] [-out database_name]
[-max_file_sz number_of_bytes] [-logfile File_Name] [-taxid TaxID]
[-taxid_map TaxIDMapFile] [-version]
DESCRIPTION
Application to create BLAST databases, version 2.5.0+
Use '-help' to print detailed descriptions of command line arguments
========================================================================
Error: Argument "dbtype". Mandatory value is missing: `String, `nucl',
`prot''
Error: (CArgException::eNoArg) Argument "dbtype". Mandatory value is
missing: `String, `nucl', `prot''
Program failed, try executing the command manually.
Makefile:606: recipe for target 'dataset_201401/CCO/goasp.fasta.psq' failed
make[1]: *** [dataset_201401/CCO/goasp.fasta.psq] Error 1
make[1]: Leaving directory '«BUILDDIR»'
dh_auto_build: make -j9 returned exit code 2
debian/rules:8: recipe for target 'build' failed
make: *** [build] Error 2
dpkg-buildpackage: error: debian/rules build gave error exit status 2
[…]
The full build log is attached.
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` la...@debian.org / chris-lamb.co.uk
`-
metastudent-data.2.0.1-1.unstable.amd64.log.txt.gz
Description: Binary data
--- End Message ---
--- Begin Message ---
Source: metastudent-data
Source-Version: 2.0.1-2
We believe that the bug you reported is fixed in the latest version of
metastudent-data, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 848...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Tatiana Malygina <merlett...@gmail.com> (supplier of updated metastudent-data
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Mon, 19 Dec 2016 14:24:45 +0100
Source: metastudent-data
Binary: metastudent-data
Architecture: source
Version: 2.0.1-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Tatiana Malygina <merlett...@gmail.com>
Description:
metastudent-data - predictor of Gene Ontology terms from protein sequence -
data fil
Closes: 848394
Changes:
metastudent-data (2.0.1-2) unstable; urgency=medium
.
[ Andreas Tille ]
* Team upload.
* cme fix dpkg-control
* Follow hint of Aaron M. Ucko regarding blast2 Build-Depends
* debhelper 10
* d/rules: remove redundant xz compression enforcement
.
[ Tatiana Malygina ]
* Follow hints of Aaron M. Ucko - provide type of input file for formatdb
(closes: #848394).
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Files:
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metastudent-data_2.0.1-2.dsc
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