On Tue, 13 Dec 2016 09:27:17 +0100 Andreas Tille <andr...@an3as.eu> wrote:
> Hi Kevin,
>
> you injected a "Closes: #845737" in the latest changelog but I get:
>
>
> ======================================================================
> FAIL: tests.tests.test_symlink_time_handling
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File "/usr/lib/python3/dist-packages/nose/case.py", line 198, in runTest
> self.test(*self.arg)
> File
> "/build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/tests/tests.py",
> line 345, in test_symlink_time_handling
> run(dpath("test_symlink_time_handling"))
> File
> "/build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/tests/tests.py",
> line 89, in run
> assert success, "expected successful execution"
> AssertionError: expected successful execution
> -------------------- >> begin captured logging << --------------------
> snakemake.logging: WARNING: Provided cores: 3
> snakemake.logging: WARNING: Rules claiming more threads will be scaled down.
> snakemake.logging: WARNING: Job counts:
> count jobs
> 1 main
> 1 make_output
> 2
> snakemake.logging: INFO: rule make_output:
> input: input_link
> output: output_link
> snakemake.logging: INFO:
> snakemake.logging: WARNING: Removing output files of failed job make_output
> since they might be corrupted:
> output_link
> snakemake.logging: WARNING: Will exit after finishing currently running jobs.
> snakemake.logging: ERROR: Exiting because a job execution failed. Look above
> for error message
> --------------------- >> end captured logging << ---------------------
>
> ----------------------------------------------------------------------
> Ran 70 tests in 36.997s
>
> FAILED (failures=1)
> E: pybuild pybuild:276: test: plugin distutils failed with: exit code=1: cd
> /build/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build; python3.5 -m nose
> tests
>
>
> So if there is no sensible explanation why this test might fail in a
> chroot disconnected from the net this bug is not closed. In case the
> error occures due to the attempt to access some online resources the
> test needs to be excluded.
>
> Kind regards
>
> Andreas.
>
> --
> http://fam-tille.de
Looks like this error is unrelated with access to remote resources.
Andreas' log is missing the following important line:
```
ln: failed to create symbolic link 'input_link': File exists
CalledProcessError in line 37 of
/<<BUILDDIR>>/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/tests/test_symlink_time_handling/Snakefile:
Command 'ln -s input_file input_link' returned non-zero exit status 1
File
"/<<BUILDDIR>>/snakemake-3.9.0+dfsg/.pybuild/pythonX.Y_3.5/build/tests/test_symlink_time_handling/Snakefile",
line 37, in <module>
```
So it seems to be a defect in the upstream testsuite.
Ghis
