Hi Andreas, Thanks for letting us know. We are actively trying to hire a Java developer who will take over the maintenance and development of Artemis. So unfortunately it will be at least a few months before we will have anyone in post to work on it. If you happen to know of anyone looking for a job, please send them our way! Regards, Andrew
> On 5 Dec 2016, at 14:40, Andreas Tille <ti...@debian.org> wrote: > > Hi, > > after uploading htsjdk 2.7.0 Artemis failed to build from source[1]. I > relised that the file src/main/java/htsjdk/samtools/SAMFileReader.java > was removed from htsjdk source and assumed that this was by accident. > However, upstream has dropped this interface intentionally as you can > read below. In issue #767[2] an htsjdk author gives advise to use the > new API version. > > Kind regards > > Andreas. > > > [1] https://bugs.debian.org/846671 > [2] https://github.com/samtools/htsjdk/issues/767 > > > ----- Forwarded message from Daniel Gómez-Sánchez <notificati...@github.com> > ----- > > Date: Mon, 05 Dec 2016 06:18:16 -0800 > From: Daniel Gómez-Sánchez <notificati...@github.com> > To: samtools/htsjdk <hts...@noreply.github.com> > Cc: Andreas Tille <ti...@debian.org>, Author <aut...@noreply.github.com> > Subject: Re: [samtools/htsjdk] SAMFileReader vanished in Version 2.7.0 (#767) > > The file was removed in #699 because it was deprecated. I guess that either > 1) fastqc/artemis should be updated to use the new API version, or 2) the > classpath for them in Debian should include an older version. > > -- > You are receiving this because you authored the thread. > Reply to this email directly or view it on GitHub: > https://github.com/samtools/htsjdk/issues/767#issuecomment-264864910 > > ----- End forwarded message ----- > > -- > http://fam-tille.de > > ----- End forwarded message ----- > > -- > http://fam-tille.de -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE.
