Hi all,
On Sat, Dec 03, 2016 at 08:19:36AM +0100, Lucas Nussbaum wrote:
> Source: artemis
> Version: 16.0.0+dfsg-5
> Severity: serious
> Tags: stretch sid
> User: debian...@lists.debian.org
> Usertags: qa-ftbfs-20161202 qa-ftbfs
> Justification: FTBFS on amd64
>
> Hi,
>
> During a rebuild of all packages in sid, your package failed to build on
> amd64.
>
> Relevant part (hopefully):
> > make[2]: Entering directory '/<<BUILDDIR>>/artemis-16.0.0+dfsg'
> > idlj -Icorba corba/types.idl
> > idlj -Icorba corba/nsdb.idl
> > idlj -Icorba corba/nsdb_write.idl
> > ...
> > public void actionPerformed(ActionEvent _)
> > ^
> > (use of '_' as an identifier might not be supported in releases after
> > Java SE 8)
> > /<<BUILDDIR>>/artemis-16.0.0+dfsg/uk/ac/sanger/artemis/components/alignment/BamUtils.java:145:
> > error: cannot find symbol
> > SAMFileReader inputSam = samFileReaderHash.get(bam);
> > ^
> > symbol: class SAMFileReader
> > location: class BamUtils
> > /<<BUILDDIR>>/artemis-16.0.0+dfsg/uk/ac/sanger/artemis/components/alignment/BamUtils.java:190:
> > error: cannot find symbol
> > SAMFileReader inputSam = samFileReaderHash.get(bamFile);
> > ^
> > symbol: class SAMFileReader
> > location: class BamUtils
> > Note: Some input files use or override a deprecated API.
> > Note: Recompile with -Xlint:deprecation for details.
It seems the bug against fastqc as well as artemis have the same reason.
The only thing I remember is that there was a recent upgrade of
picard-tool. Please put these bugs with high priority on your bug
squashing agenda.
Kind regards
Andreas.
--
http://fam-tille.de
