Your message dated Fri, 25 Nov 2016 13:04:18 +0000 with message-id <e1cagas-000eec...@fasolo.debian.org> and subject line Bug#844900: fixed in ncbi-vdb 2.8.0+dfsg-2 has caused the Debian Bug report #844900, regarding sra-sdk 2.7.0-1 is broken libncbi-vdb2 2.8.0+dfsg-1 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 844900: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=844900 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: sra-sdk Severity: grave Hi all, quick note from work; sorry to not being able to go deeper. A colleague has reported to me that sra-sdk 2.7.0-1 is broken libncbi-vdb2 2.8.0+dfsg-1. For instance: fastq-dump fastq-dump: symbol lookup error: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so.2: undefined symbol: mbedtls_ctr_drbg_seed Downgrading libncbi-vdb2 to 2.7.0+dfsg-4~bpo8+1. There are no build logs for sra-sdk on amd64, but I guess that sra-sdk 2.7.0-1 could have been built against 2.7.0+dfsg-4 by mistake (given that they have been uploaded on the same day, I assume that they were intended to be used together). Note that now, with source-only uploads, it is easier to get build logs. If we are lucky, maybe a binNMU will be enough ? On the other hand, maybe the only way to prevent problems for the users upgrading form Testing would be to tighten the dependency. Have a nice day, -- Charles
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--- Begin Message ---Source: ncbi-vdb Source-Version: 2.8.0+dfsg-2 We believe that the bug you reported is fixed in the latest version of ncbi-vdb, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 844...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated ncbi-vdb package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Fri, 25 Nov 2016 12:41:49 +0100 Source: ncbi-vdb Binary: libncbi-vdb2 libncbi-vdb-dev libkdf5-2 libkdf5-dev libncbi-wvdb2 libncbi-wvdb-dev Architecture: source amd64 Version: 2.8.0+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: libkdf5-2 - hdf5 access to data in the INSDC Sequence Read Archives libkdf5-dev - hdf5 access to data in the INSDC Sequence Read Archives (devel) libncbi-vdb-dev - libraries for using data in the INSDC Sequence Read Archives (dev libncbi-vdb2 - libraries for using data in the INSDC Sequence Read Archives libncbi-wvdb-dev - virtual layer update modul of ncbi-vdb library (devel) libncbi-wvdb2 - virtual layer update modul of ncbi-vdb library Closes: 844900 Changes: ncbi-vdb (2.8.0+dfsg-2) unstable; 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