Your message dated Sun, 20 Nov 2016 08:35:28 +0100
with message-id <20161120073528.gd1...@an3as.eu>
and subject line Re: [Debian-med-packaging] Bug#841560: Could anybody please
check the issue in python-skbio
has caused the Debian Bug report #841560,
regarding python-skbio: FTBFS: Tests failures
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
841560: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=841560
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: python-skbio
Version: 0.5.0-1
Severity: serious
Tags: stretch sid
User: debian...@lists.debian.org
Usertags: qa-ftbfs-20161021 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part (hopefully):
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File
> "/<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/skbio/stats/tests/test_power.py",
> line 491, in test__identify_sample_groups_not_strict
> sorted(test_pairs.values()))
> File "/usr/lib/python3/dist-packages/pandas/indexes/base.py", line 3317, in
> _evaluate_compare
> raise ValueError('Lengths must match to compare')
> ValueError: Lengths must match to compare
>
> ----------------------------------------------------------------------
> Ran 2062 tests in 41.510s
>
> FAILED (SKIP=30, errors=15)
> sys:1: ResourceWarning: unclosed file <_io.TextIOWrapper name='/dev/null'
> mode='w' encoding='ANSI_X3.4-1968'>
> E: pybuild pybuild:276: test: plugin distutils failed with: exit code=1: cd
> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build; python3.5 -m nose
> dh_auto_test: pybuild --test --test-nose -i python{version} -p 3.5 returned
> exit code 13
> debian/rules:22: recipe for target 'override_dh_auto_test' failed
If the failure looks somehow time/timezone related:
Note that this rebuild was performed without the 'tzdata' package
installed in the chroot. tzdata used be (transitively) part of
build-essential, but it no longer is. If this package requires it to
build, it should be added to build-depends. For the release team's
opinion on this, see
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=836940#185
If the failure looks LSB-related:
similarly to tzdata, lsb-base is not installed in the build chroot.
The full build log is available from:
http://aws-logs.debian.net/2016/10/21/python-skbio_0.5.0-1_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---
Hi Kevin,
On Sat, Nov 19, 2016 at 08:46:53AM +1100, Kevin Murray wrote:
> AFAICT I think I should have fixed the issues in skbio. I've filed an ROM bug,
> and updated to latest upstream. Could I please get an upload and see if the
> test failure goes away?
Uploaded and it builds on amd64 and kfreebsd-amd64. Thus closing the
bug with this mail.
Thanks for working on this
Andreas.
--
http://fam-tille.de
--- End Message ---
