Your message dated Tue, 08 Nov 2016 17:34:55 +0000
with message-id <e1c4air-000dxm...@fasolo.debian.org>
and subject line Bug#843628: fixed in libmems 1.6.0+4725-4
has caused the Debian Bug report #843628,
regarding libmems: FTBFS with Boost 1.62
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
843628: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=843628
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: libmems
Version: 1.6.0+4725-3
Severity: serious
Tags: patch
Hi Maintainer
libmems FTBFS with Boost 1.62 and outputs the following error:
In file included from ../libMems/AbstractMatch.h:19:0,
from ../libMems/UngappedLocalAlignment.h:18,
from ../libMems/Match.h:19,
from ../libMems/MatchFinder.h:17,
from ../libMems/MemHash.h:20,
from ../libMems/RepeatHash.h:16,
from RepeatHash.cpp:13:
/usr/include/boost/type_traits/remove_pointer.hpp:21:21: error: missing binary operator
before token "("
#if BOOST_WORKAROUND(BOOST_MSVC, < 1900)
^
The attached patch adds a missing include so that BOOST_WORKAROUND is defined.
Regards
Graham
Description: Fix FTBFS with Boost 1.62
Add missing include so that BOOST_WORKAROUND is defined.
Author: Graham Inggs <gin...@debian.org>
Last-Update: 2016-11-08
--- a/libMems/AbstractMatch.h
+++ b/libMems/AbstractMatch.h
@@ -16,6 +16,7 @@
#include "libGenome/gnClone.h"
#include <vector>
#include <algorithm>
+#include <boost/detail/workaround.hpp>
#include <boost/type_traits/remove_pointer.hpp>
#include <boost/type_traits/add_pointer.hpp>
#include <boost/dynamic_bitset.hpp>
--- End Message ---
--- Begin Message ---
Source: libmems
Source-Version: 1.6.0+4725-4
We believe that the bug you reported is fixed in the latest version of
libmems, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 843...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated libmems package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Tue, 08 Nov 2016 14:16:07 +0100
Source: libmems
Binary: libmems-1.6-dev libmems-1.6-1v5
Architecture: source amd64
Version: 1.6.0+4725-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
libmems-1.6-1v5 - library to support DNA string matching and comparative
genomics
libmems-1.6-dev - development library to support DNA string matching and
comparativ
Closes: 843628
Changes:
libmems (1.6.0+4725-4) unstable; urgency=medium
.
* Use fake watch file
* Add missing include so that BOOST_WORKAROUND is defined (thanks to
(Graham Inggs <gin...@debian.org> for the patch)
Closes: #843628
* Add patch to really drop explicit version in package names but do not
activate the patch due to transition freeze
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