Your message dated Tue, 25 Oct 2016 16:58:00 +0000
with message-id <a91176e8-cd03-fafc-cc1a-b30fa813d...@thykier.net>
and subject line Re: psi4: FTBFS with bindnow and PIE enabled
has caused the Debian Bug report #837685,
regarding boost1.61 needs PIE binNMU
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
837685: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=837685
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: boost1.61
Version: 1.61.0+dfsg-3
Severity: serious
Justification: make other packages FTBFS
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Hi,
When rebuilding the psi4 package on amd6', it FTBFS with:
[100%] Linking CXX executable ../../../bin/psi4
cd /<<PKGBUILDDIR>>/builddir/src/bin/psi4 && /usr/bin/cmake -E
cmake_link_script CMakeFiles/psi4.dir/link.txt --verbose=1
/usr/bin/c++ -DRESTRICT=__restrict__ -Xlinker -export-dynamic -fPIC
-std=c++11 -fopenmp -O2 -g -DNDEBUG
CMakeFiles/psi4_objlib.dir/export_psio.cc.o
CMakeFiles/psi4_objlib.dir/export_mints.cc.o
CMakeFiles/psi4_objlib.dir/psi_stop.cc.o
CMakeFiles/psi4_objlib.dir/export_functional.cc.o
CMakeFiles/psi4_objlib.dir/export_oeprop.cc.o
CMakeFiles/psi4_objlib.dir/export_plugins.cc.o
CMakeFiles/psi4_objlib.dir/export_blas_lapack.cc.o
CMakeFiles/psi4_objlib.dir/export_benchmarks.cc.o
CMakeFiles/psi4_objlib.dir/export_efp.cc.o
CMakeFiles/psi4_objlib.dir/export_cubeprop.cc.o
CMakeFiles/psi4_objlib.dir/clean.cc.o
CMakeFiles/psi4_objlib.dir/create_new_plugin.cc.o
CMakeFiles/psi4_objlib.dir/script.cc.o
CMakeFiles/psi4_objlib.dir/set_memory.cc.o
CMakeFiles/psi4_objlib.dir/read_options.cc.o
CMakeFiles/psi4_objlib.dir/export_libparallel.cc.o
CMakeFiles/versioned_code.dir/version.cc.o
CMakeFiles/versioned_code.dir/python.cc.o
CMakeFiles/versioned_code.dir/psi_start.cc.o CMakeFiles/versioned_code.dir
/psi4.cc.o -o ../../../bin/psi4 -rdynamic -lutil -lm -lrt -ldl -lpython2.7
-Wl,--whole-archive ../../../lib/libadc.a ../../../lib/libccdensity.a
../../../lib/libccenergy.a ../../../lib/libcceom.a ../../../lib/libcchbar.a
../../../lib/libcclambda.a ../../../lib/libccresponse.a
../../../lib/libccsort.a ../../../lib/libcctransort.a
../../../lib/libcctriples.a ../../../lib/libdcft.a ../../../lib/libdetci.a
../../../lib/libdfmp2.a ../../../lib/libdfocc.a ../../../lib/libefp.a
../../../lib/libfindif.a ../../../lib/libfisapt.a ../../../lib/libfnocc.a
../../../lib/libmcscf.a ../../../lib/libmints_wrapper.a ../../../lib/libmrcc.a
../../../lib/libocc.a ../../../lib/liboptking.a ../../../lib/libpsimrcc.a
../../../lib/libsapt.a ../../../lib/libscf.a ../../../lib/libscfgrad.a
../../../lib/libthermo.a ../../../lib/libtransqt2.a ../../../lib/libdmrg.a
../../../lib/lib3index.a ../../../lib/libciomr.a ../../../lib/libdiis.a
../../../lib/libdisp.a ../../../lib/libdpd.a ../../../lib/libefp_solver.a .
./../../lib/libfock.a ../../../lib/libfunctional.a -Wl,--whole-archive
../../../lib/libiwl.a -Wl,--no-whole-archive ../../../lib/libmints.a
../../../lib/libmoinfo.a ../../../lib/liboptions.a ../../../lib/libparallel.a
../../../lib/libparallel2.a ../../../lib/libplugin.a
../../../lib/libsapt_solver.a ../../../lib/libscf_solver.a
../../../lib/libthce.a ../../../lib/libtrans.a ../../../lib/libpsi4util.a
../../../lib/libpsio.a ../../../lib/libPsiUtil.a ../../../lib/libqt.a
../../../lib/libcubeprop.a ../../../lib/libinterface_libefp.a
-Wl,--no-whole-archive -Wl,-Bstatic -lboost_filesystem -lboost_python
-lboost_regex -lboost_serialization -lboost_system -lboost_timer -lboost_chrono
-lboost_thread -lboost_date_time -lboost_atomic -Wl,-Bdynamic -lpthread
-llapack -lblas -lpython2.7 -lblas -llapack -lint -lderiv -lutil -ldl -lrt -lm
/usr/lib/x86_64-linux-gnu/libchemps2.so -lchemps2
/usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.so -lsz -lz -lpthread -lm
-lpython2.7 -ldl -Wl,-rpath,/usr/l
ib/x86_64-linux-gnu/hdf5/serial/lib
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libboost_filesystem.a(operations.o):
relocation R_X86_64_32S against symbol
`_ZN5boost6detail15sp_counted_base7destroyEv' can not be used when making a
shared object; recompile with -fPIC
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libboost_filesystem.a(path.o):
relocation R_X86_64_32 against `.rodata.str1.8' can not be used when making a
shared object; recompile with -fPIC
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libboost_python.a(list.o):
relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a
shared object; recompile with -fPIC
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libboost_python.a(dict.o):
relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a
shared object; recompile with -fPIC
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libboost_python.a(tuple.o):
relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a
shared object; recompile with -fPIC
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libboost_python.a(str.o):
relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a
shared object; recompile with -fPIC
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libboost_python.a(from_python.o):
relocation R_X86_64_32 against `.rodata.str1.8' can not be used when making a
shared object; recompile with -fPIC
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libboost_python.a(registry.o):
relocation R_X86_64_32 against `.bss' can not be used when making a shared
object; recompile with -fPIC
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libboost_python.a(type_id.o):
relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a
shared object; recompile with -fPIC
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libboost_python.a(enum.o):
relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a
shared object; recompile with -fPIC
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libboost_python.a(class.o):
relocation R_X86_64_32 against `.data' can not be used when making a shared
object; recompile with -fPIC
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libboost_python.a(function.o):
relocation R_X86_64_32 against symbol `_Py_NotImplementedStruct' can not be
used when making a shared object; recompile with -fPIC
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libboost_python.a(inheritance.o):
relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a
shared object; recompile with -fPIC
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libboost_python.a(life_support.o):
relocation R_X86_64_32 against symbol `_Py_NoneStruct' can not be used when
making a shared object; recompile with -fPIC
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libboost_python.a(pickle_support.o):
relocation R_X86_64_32 against `.bss' can not be used when making a shared
object; recompile with -fPIC
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libboost_python.a(errors.o):
relocation R_X86_64_32 against symbol
`_ZN5boost6python17error_already_setD1Ev' can not be used when making a shared
object; recompile with -fPIC
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libboost_python.a(module.o):
relocation R_X86_64_32S against symbol `_Py_NoneStruct' can not be used when
making a shared object; recompile with -fPIC
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libboost_python.a(builtin_converters.o):
relocation R_X86_64_32 against symbol `PyInt_Type' can not be used when making
a shared object; recompile with -fPIC
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libboost_python.a(iterator.o):
relocation R_X86_64_32 against `.bss' can not be used when making a shared
object; recompile with -fPIC
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libboost_python.a(stl_iterator.o):
relocation R_X86_64_32S against symbol `_Py_NoneStruct' can not be used when
making a shared object; recompile with -fPIC
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libboost_python.a(object_protocol.o):
relocation R_X86_64_32 against hidden symbol `__dso_handle' can not be used
when making a shared object
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libboost_python.a(object_operators.o):
relocation R_X86_64_32 against hidden symbol `__dso_handle' can not be used
when making a shared object
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libboost_python.a(import.o):
relocation R_X86_64_32S against symbol `_Py_NoneStruct' can not be used when
making a shared object; recompile with -fPIC
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libboost_python.a(exec.o):
relocation R_X86_64_32S against symbol `_Py_NoneStruct' can not be used when
making a shared object; recompile with -fPIC
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libboost_python.a(function_doc_signature.o):
relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a
shared object; recompile with -fPIC
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libboost_regex.a(instances.o):
relocation R_X86_64_32 against `.rodata.str1.8' can not be used when making a
shared object; recompile with -fPIC
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libboost_regex.a(regex.o):
relocation R_X86_64_32S against symbol `_ZTVN5boost11regex_errorE' can not be
used when making a shared object; recompile with -fPIC
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libboost_regex.a(regex_traits_defaults.o):
relocation R_X86_64_32 against `.rodata' can not be used when making a shared
object; recompile with -fPIC
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libboost_regex.a(cpp_regex_traits.o):
relocation R_X86_64_32 against symbol
`_ZZN5boost16cpp_regex_traitsIcE14get_mutex_instEvE7s_mutex' can not be used
when making a shared object; recompile with -fPIC
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libboost_system.a(error_code.o):
relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a
shared object; recompile with -fPIC
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libboost_thread.a(thread.o):
relocation R_X86_64_32 against `.rodata.str1.8' can not be used when making a
shared object; recompile with -fPIC
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libboost_thread.a(once.o):
relocation R_X86_64_32 against `.bss' can not be used when making a shared
object; recompile with -fPIC
/usr/bin/ld: final link failed: Nonrepresentable section on output
collect2: error: ld returned 1 exit status
This is related to enabling PIE and bindnow for amd64 (and some other
architectures).
For more information about the changes to sid's dpkg and GCC please
visit:
https://wiki.debian.org/Hardening/PIEByDefaultTransition
Thanks,
_g.
- -- System Information:
Debian Release: stretch/sid
APT prefers testing
APT policy: (500, 'testing')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 4.6.0-1-amd64 (SMP w/2 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
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--- End Message ---
--- Begin Message ---
On Tue, 13 Sep 2016 16:02:09 +0200 Balint Reczey
<bal...@balintreczey.hu> wrote:
> Source: psi4
> Version: 1.0~rc-3
> Severity: important
> User: bal...@balintreczey.hu
> Usertags: pie-bindnow-20160906
> Justification: FTBFS on amd64 with extra hardening
>
> Hi,
>
> During a rebuild of all packages in sid, your package failed to build on
> amd64 with patched GCC and dpkg.
>
> The rebuild tested if packages are ready for a transition
> enabling PIE and bindnow for amd64.
>
> For more information about the changes to sid's dpkg and GCC please
> visit:
> https://wiki.debian.org/Hardening/PIEByDefaultTransition
>
> Relevant part (hopefully):
> ...
> [...]
Rebuilt successfully with -fPIE
--- End Message ---
