Your message dated Sun, 25 Sep 2016 07:59:13 +0000 with message-id <e1bo4lb-0007tf...@franck.debian.org> and subject line Bug#838340: fixed in seqan2 2.2.0+dfsg-2 has caused the Debian Bug report #838340, regarding seqan-dev and libseqan2-dev: error when trying to install together to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 838340: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=838340 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: libseqan2-dev,seqan-dev Version: libseqan2-dev/2.2.0+dfsg-1 Version: seqan-dev'1.4.2+dfsg-1@all, seqan-dev/1.4.1+dfsg-2 Severity: serious User: trei...@debian.org Usertags: edos-file-overwrite Date: 2016-09-20 Architecture: amd64 Distribution: sid Hi, automatic installation tests of packages that share a file and at the same time do not conflict by their package dependency relationships has detected the following problem: Selecting previously unselected package libseqan2-dev. (Reading database ... 10967 files and directories currently installed.) Preparing to unpack .../libseqan2-dev_2.2.0+dfsg-1_all.deb ... Unpacking libseqan2-dev (2.2.0+dfsg-1) ... Selecting previously unselected package seqan-dev. Preparing to unpack .../seqan-dev_1.4.2+dfsg-1_all.deb ... Unpacking seqan-dev (1.4.2+dfsg-1) ... dpkg: error processing archive /var/cache/apt/archives/seqan-dev_1.4.2+dfsg-1_all.deb (--unpack): trying to overwrite '/usr/include/seqan/align/align_base.h', which is also in package libseqan2-dev 2.2.0+dfsg-1 dpkg-deb: error: subprocess paste was killed by signal (Broken pipe) Errors were encountered while processing: /var/cache/apt/archives/seqan-dev_1.4.2+dfsg-1_all.deb E: Sub-process /usr/bin/dpkg returned an error code (1) This is a serious bug as it makes installation fail, and violates sections 7.6.1 and 10.1 of the policy. An optimal solution would consist in only one of the packages installing that file, and renaming or removing the file in the other package. Depending on the circumstances you might also consider Replace relations or file diversions. If the conflicting situation cannot be resolved then, as a last resort, the two packages have to declare a mutual Conflict. Please take into account that Replaces, Conflicts and diversions should only be used when packages provide different implementations for the same functionality. Here is a list of files that are known to be shared by both packages (according to the Contents file for sid/amd64, which may be slightly out of sync): /usr/include/seqan/align.h /usr/include/seqan/align/align_base.h /usr/include/seqan/align/align_cols.h /usr/include/seqan/align/align_config.h /usr/include/seqan/align/align_iterator_base.h /usr/include/seqan/align/align_metafunctions.h /usr/include/seqan/align/align_traceback.h /usr/include/seqan/align/alignment_algorithm_tags.h /usr/include/seqan/align/alignment_operations.h /usr/include/seqan/align/dp_algorithm_impl.h /usr/include/seqan/align/dp_band.h /usr/include/seqan/align/dp_cell.h /usr/include/seqan/align/dp_cell_affine.h /usr/include/seqan/align/dp_cell_linear.h /usr/include/seqan/align/dp_formula.h /usr/include/seqan/align/dp_formula_affine.h /usr/include/seqan/align/dp_formula_linear.h /usr/include/seqan/align/dp_matrix.h /usr/include/seqan/align/dp_matrix_navigator.h /usr/include/seqan/align/dp_matrix_navigator_score_matrix.h /usr/include/seqan/align/dp_matrix_navigator_score_matrix_sparse.h /usr/include/seqan/align/dp_matrix_navigator_trace_matrix.h /usr/include/seqan/align/dp_matrix_sparse.h /usr/include/seqan/align/dp_meta_info.h /usr/include/seqan/align/dp_profile.h /usr/include/seqan/align/dp_scout.h /usr/include/seqan/align/dp_setup.h /usr/include/seqan/align/dp_trace_segment.h /usr/include/seqan/align/dp_traceback_adaptor.h /usr/include/seqan/align/dp_traceback_impl.h /usr/include/seqan/align/evaluate_alignment.h /usr/include/seqan/align/gap_anchor.h /usr/include/seqan/align/gapped_value_type.h /usr/include/seqan/align/gaps_anchor.h /usr/include/seqan/align/gaps_array.h /usr/include/seqan/align/gaps_base.h /usr/include/seqan/align/gaps_iterator_anchor.h /usr/include/seqan/align/gaps_iterator_array.h /usr/include/seqan/align/gaps_iterator_base.h /usr/include/seqan/align/global_alignment_banded.h /usr/include/seqan/align/global_alignment_hirschberg_impl.h /usr/include/seqan/align/global_alignment_myers_hirschberg_impl.h /usr/include/seqan/align/global_alignment_myers_impl.h /usr/include/seqan/align/global_alignment_specialized.h /usr/include/seqan/align/global_alignment_unbanded.h /usr/include/seqan/align/local_alignment_banded.h /usr/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h /usr/include/seqan/align/local_alignment_enumeration.h /usr/include/seqan/align/local_alignment_enumeration_banded.h /usr/include/seqan/align/local_alignment_enumeration_unbanded.h /usr/include/seqan/align/local_alignment_unbanded.h /usr/include/seqan/align/local_alignment_waterman_eggert_impl.h /usr/include/seqan/align/matrix_base.h /usr/include/seqan/arg_parse.h /usr/include/seqan/arg_parse/arg_parse_argument.h /usr/include/seqan/arg_parse/arg_parse_ctd_support.h /usr/include/seqan/arg_parse/arg_parse_doc.h /usr/include/seqan/arg_parse/arg_parse_exceptions.h /usr/include/seqan/arg_parse/arg_parse_option.h /usr/include/seqan/arg_parse/arg_parse_parse.h /usr/include/seqan/arg_parse/arg_parse_type_support.h /usr/include/seqan/arg_parse/argument_parser.h /usr/include/seqan/arg_parse/tool_doc.h /usr/include/seqan/arg_parse/xml_support.h /usr/include/seqan/bam_io.h /usr/include/seqan/bam_io/bam_alignment_record.h /usr/include/seqan/bam_io/bam_alignment_record_util.h /usr/include/seqan/bam_io/bam_header_record.h /usr/include/seqan/bam_io/bam_index_bai.h /usr/include/seqan/bam_io/bam_io_context.h /usr/include/seqan/bam_io/bam_sam_conversion.h /usr/include/seqan/bam_io/bam_tags_dict.h /usr/include/seqan/bam_io/cigar.h /usr/include/seqan/bam_io/read_bam.h /usr/include/seqan/bam_io/read_sam.h /usr/include/seqan/bam_io/write_bam.h /usr/include/seqan/bam_io/write_sam.h /usr/include/seqan/basic.h /usr/include/seqan/basic/aggregate_concept.h /usr/include/seqan/basic/allocator_chunkpool.h /usr/include/seqan/basic/allocator_interface.h /usr/include/seqan/basic/allocator_multipool.h /usr/include/seqan/basic/allocator_simple.h /usr/include/seqan/basic/allocator_singlepool.h /usr/include/seqan/basic/allocator_to_std.h /usr/include/seqan/basic/alphabet_adapt_builtins.h /usr/include/seqan/basic/alphabet_bio.h /usr/include/seqan/basic/alphabet_concept.h /usr/include/seqan/basic/alphabet_math.h /usr/include/seqan/basic/alphabet_profile.h /usr/include/seqan/basic/alphabet_qualities.h /usr/include/seqan/basic/alphabet_residue.h /usr/include/seqan/basic/alphabet_residue_funcs.h /usr/include/seqan/basic/alphabet_residue_tabs.h /usr/include/seqan/basic/alphabet_simple_type.h /usr/include/seqan/basic/alphabet_storage.h /usr/include/seqan/basic/array_construct_destruct.h /usr/include/seqan/basic/basic_aggregate.h /usr/include/seqan/basic/basic_allocator.h /usr/include/seqan/basic/basic_alphabet.h /usr/include/seqan/basic/basic_concept.h /usr/include/seqan/basic/basic_container.h /usr/include/seqan/basic/basic_debug.h /usr/include/seqan/basic/basic_exception.h /usr/include/seqan/basic/basic_fundamental.h /usr/include/seqan/basic/basic_iterator.h /usr/include/seqan/basic/basic_math.h /usr/include/seqan/basic/basic_metaprogramming.h /usr/include/seqan/basic/basic_parallelism.h /usr/include/seqan/basic/basic_proxy.h /usr/include/seqan/basic/basic_smart_pointer.h /usr/include/seqan/basic/basic_tangle.h /usr/include/seqan/basic/basic_type.h /usr/include/seqan/basic/boost_preprocessor_subset.h /usr/include/seqan/basic/builtin_functions.h /usr/include/seqan/basic/concept_checking.h /usr/include/seqan/basic/container_concept.h /usr/include/seqan/basic/debug_helper.h /usr/include/seqan/basic/debug_test_system.h /usr/include/seqan/basic/fundamental_comparison.h /usr/include/seqan/basic/fundamental_concepts.h /usr/include/seqan/basic/fundamental_conversion.h /usr/include/seqan/basic/fundamental_metafunctions.h /usr/include/seqan/basic/fundamental_tags.h /usr/include/seqan/basic/fundamental_transport.h /usr/include/seqan/basic/holder_base.h /usr/include/seqan/basic/holder_simple.h /usr/include/seqan/basic/holder_tristate.h /usr/include/seqan/basic/hosted_type_interface.h /usr/include/seqan/basic/iterator_adapt_pointer.h /usr/include/seqan/basic/iterator_adapt_std.h /usr/include/seqan/basic/iterator_adaptor.h /usr/include/seqan/basic/iterator_base.h /usr/include/seqan/basic/iterator_concept.h /usr/include/seqan/basic/iterator_interface.h /usr/include/seqan/basic/iterator_position.h /usr/include/seqan/basic/macro_deprecated.h /usr/include/seqan/basic/math_functions.h /usr/include/seqan/basic/math_log_space_value.h /usr/include/seqan/basic/metaprogramming_control.h /usr/include/seqan/basic/metaprogramming_enable_if.h /usr/include/seqan/basic/metaprogramming_logic.h /usr/include/seqan/basic/metaprogramming_math.h /usr/include/seqan/basic/metaprogramming_type.h /usr/include/seqan/basic/pair_base.h /usr/include/seqan/basic/pair_bit_compressed.h /usr/include/seqan/basic/pair_packed.h /usr/include/seqan/basic/profiling.h /usr/include/seqan/basic/proxy_base.h /usr/include/seqan/basic/proxy_iterator.h /usr/include/seqan/basic/test_system.h /usr/include/seqan/basic/triple_base.h /usr/include/seqan/basic/triple_packed.h /usr/include/seqan/basic/tuple_base.h /usr/include/seqan/basic/tuple_bit_compressed.h /usr/include/seqan/basic/volatile_ptr.h /usr/include/seqan/consensus.h /usr/include/seqan/consensus/consensus_base.h /usr/include/seqan/consensus/consensus_library.h /usr/include/seqan/consensus/consensus_realign.h /usr/include/seqan/consensus/consensus_score.h /usr/include/seqan/file.h /usr/include/seqan/file/file_base.h /usr/include/seqan/file/file_cstyle.h /usr/include/seqan/file/file_forwards.h /usr/include/seqan/file/file_interface.h /usr/include/seqan/file/file_mapping.h /usr/include/seqan/file/file_page.h /usr/include/seqan/file/string_external.h /usr/include/seqan/file/string_mmap.h /usr/include/seqan/find.h /usr/include/seqan/find/find_abndm.h /usr/include/seqan/find/find_ahocorasick.h /usr/include/seqan/find/find_base.h /usr/include/seqan/find/find_begin.h /usr/include/seqan/find/find_bndm.h /usr/include/seqan/find/find_bom.h /usr/include/seqan/find/find_hamming_simple.h /usr/include/seqan/find/find_horspool.h /usr/include/seqan/find/find_multi.h /usr/include/seqan/find/find_multiple_bfam.h /usr/include/seqan/find/find_multiple_shiftand.h /usr/include/seqan/find/find_myers_ukkonen.h /usr/include/seqan/find/find_pattern_base.h /usr/include/seqan/find/find_pex.h /usr/include/seqan/find/find_score.h /usr/include/seqan/find/find_set_horspool.h /usr/include/seqan/find/find_shiftand.h /usr/include/seqan/find/find_shiftor.h /usr/include/seqan/find/find_simple.h /usr/include/seqan/find/find_wild_shiftand.h /usr/include/seqan/find/find_wumanber.h /usr/include/seqan/gff_io.h /usr/include/seqan/gff_io/gff_io_base.h /usr/include/seqan/graph_algorithms.h /usr/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h /usr/include/seqan/graph_algorithms/graph_algorithm_hmm.h /usr/include/seqan/graph_algorithms/graph_algorithm_lis_his.h /usr/include/seqan/graph_align.h /usr/include/seqan/graph_align/graph_algorithm_refine_align.h /usr/include/seqan/graph_align/graph_algorithm_refine_aligngraph.h /usr/include/seqan/graph_align/graph_algorithm_refine_annotation.h /usr/include/seqan/graph_align/graph_algorithm_refine_exact.h /usr/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h /usr/include/seqan/graph_align/graph_algorithm_refine_fragment.h /usr/include/seqan/graph_align/graph_algorithm_refine_inexact.h /usr/include/seqan/graph_align/graph_algorithm_refine_scoring.h /usr/include/seqan/graph_align/graph_impl_align.h /usr/include/seqan/graph_align/graph_impl_align_adapt.h /usr/include/seqan/graph_msa.h /usr/include/seqan/graph_msa/graph_align_tcoffee_base.h /usr/include/seqan/graph_msa/graph_align_tcoffee_distance.h /usr/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h /usr/include/seqan/graph_msa/graph_align_tcoffee_io.h /usr/include/seqan/graph_msa/graph_align_tcoffee_kmer.h /usr/include/seqan/graph_msa/graph_align_tcoffee_library.h /usr/include/seqan/graph_msa/graph_align_tcoffee_msa.h /usr/include/seqan/graph_msa/graph_align_tcoffee_progressive.h /usr/include/seqan/graph_msa/graph_align_tcoffee_refinement.h /usr/include/seqan/graph_types.h /usr/include/seqan/graph_types/graph_base.h /usr/include/seqan/graph_types/graph_drawing.h /usr/include/seqan/graph_types/graph_edgestump.h /usr/include/seqan/graph_types/graph_idmanager.h /usr/include/seqan/graph_types/graph_impl_automaton.h /usr/include/seqan/graph_types/graph_impl_directed.h /usr/include/seqan/graph_types/graph_impl_hmm.h /usr/include/seqan/graph_types/graph_impl_oracle.h /usr/include/seqan/graph_types/graph_impl_tree.h /usr/include/seqan/graph_types/graph_impl_trie.h /usr/include/seqan/graph_types/graph_impl_undirected.h /usr/include/seqan/graph_types/graph_impl_wordgraph.h /usr/include/seqan/graph_types/graph_interface.h /usr/include/seqan/graph_types/graph_iterator.h /usr/include/seqan/graph_types/graph_iterator_adjacency.h /usr/include/seqan/graph_types/graph_iterator_bfs.h /usr/include/seqan/graph_types/graph_iterator_dfs.h /usr/include/seqan/graph_types/graph_iterator_edge.h /usr/include/seqan/graph_types/graph_iterator_outedge.h /usr/include/seqan/graph_types/graph_iterator_vertex.h /usr/include/seqan/graph_types/graph_utility_parsing.h /usr/include/seqan/index.h /usr/include/seqan/index/find_index.h /usr/include/seqan/index/find_index_approx.h /usr/include/seqan/index/find_index_esa.h /usr/include/seqan/index/find_index_qgram.h /usr/include/seqan/index/find_pigeonhole.h /usr/include/seqan/index/find_quasar.h /usr/include/seqan/index/find_swift.h /usr/include/seqan/index/index_base.h /usr/include/seqan/index/index_bwt.h /usr/include/seqan/index/index_childtab.h /usr/include/seqan/index/index_dfi.h /usr/include/seqan/index/index_esa_algs.h /usr/include/seqan/index/index_esa_algs_multi.h /usr/include/seqan/index/index_esa_base.h /usr/include/seqan/index/index_esa_drawing.h /usr/include/seqan/index/index_esa_stree.h /usr/include/seqan/index/index_fm.h /usr/include/seqan/index/index_fm_compressed_sa.h /usr/include/seqan/index/index_fm_compressed_sa_iterator.h /usr/include/seqan/index/index_fm_dox.h /usr/include/seqan/index/index_fm_lf_table.h /usr/include/seqan/index/index_fm_rank_dictionary_wt.h /usr/include/seqan/index/index_fm_right_array_binary_tree.h /usr/include/seqan/index/index_fm_right_array_binary_tree_iterator.h /usr/include/seqan/index/index_fm_sparse_string.h /usr/include/seqan/index/index_fm_stree.h /usr/include/seqan/index/index_forwards.h /usr/include/seqan/index/index_lcp.h /usr/include/seqan/index/index_lcp_tree.h /usr/include/seqan/index/index_pizzachili.h /usr/include/seqan/index/index_pizzachili_find.h /usr/include/seqan/index/index_pizzachili_string.h /usr/include/seqan/index/index_qgram.h /usr/include/seqan/index/index_qgram_openaddressing.h /usr/include/seqan/index/index_sa_btree.h /usr/include/seqan/index/index_sa_bwtwalk.h /usr/include/seqan/index/index_sa_lss.h /usr/include/seqan/index/index_sa_mm.h /usr/include/seqan/index/index_sa_qsort.h /usr/include/seqan/index/index_shawarma.h /usr/include/seqan/index/index_shims.h /usr/include/seqan/index/index_skew3.h /usr/include/seqan/index/index_skew7.h /usr/include/seqan/index/index_skew7_multi.h /usr/include/seqan/index/index_wotd.h /usr/include/seqan/index/pipe_merger3.h /usr/include/seqan/index/pipe_merger7.h /usr/include/seqan/index/pizzachili_api.h /usr/include/seqan/index/pump_extender3.h /usr/include/seqan/index/pump_extender7.h /usr/include/seqan/index/pump_lcp_core.h /usr/include/seqan/index/pump_separator7.h /usr/include/seqan/index/radix.h /usr/include/seqan/index/repeat_base.h /usr/include/seqan/index/shape_base.h /usr/include/seqan/index/shape_gapped.h /usr/include/seqan/index/shape_onegapped.h /usr/include/seqan/index/shape_predefined.h /usr/include/seqan/index/shape_threshold.h /usr/include/seqan/map.h /usr/include/seqan/map/map_adapter_stl.h /usr/include/seqan/map/map_base.h /usr/include/seqan/map/map_chooser.h /usr/include/seqan/map/map_skiplist.h /usr/include/seqan/map/map_vector.h /usr/include/seqan/map/sumlist.h /usr/include/seqan/map/sumlist_mini.h /usr/include/seqan/map/sumlist_skip.h /usr/include/seqan/misc/edit_environment.h /usr/include/seqan/misc/priority_type_base.h /usr/include/seqan/misc/priority_type_heap.h /usr/include/seqan/modifier.h /usr/include/seqan/modifier/modifier_alphabet.h /usr/include/seqan/modifier/modifier_alphabet_expansion.h /usr/include/seqan/modifier/modifier_functors.h /usr/include/seqan/modifier/modifier_iterator.h /usr/include/seqan/modifier/modifier_reverse.h /usr/include/seqan/modifier/modifier_shortcuts.h /usr/include/seqan/modifier/modifier_string.h /usr/include/seqan/modifier/modifier_view.h /usr/include/seqan/parallel.h /usr/include/seqan/parallel/parallel_algorithms.h /usr/include/seqan/parallel/parallel_atomic_misc.h /usr/include/seqan/parallel/parallel_atomic_primitives.h /usr/include/seqan/parallel/parallel_macros.h /usr/include/seqan/parallel/parallel_splitting.h /usr/include/seqan/parallel/parallel_tags.h /usr/include/seqan/pipe.h /usr/include/seqan/pipe/pipe_base.h /usr/include/seqan/pipe/pipe_caster.h /usr/include/seqan/pipe/pipe_counter.h /usr/include/seqan/pipe/pipe_echoer.h /usr/include/seqan/pipe/pipe_edit_environment.h /usr/include/seqan/pipe/pipe_filter.h /usr/include/seqan/pipe/pipe_iterator.h /usr/include/seqan/pipe/pipe_joiner.h /usr/include/seqan/pipe/pipe_namer.h /usr/include/seqan/pipe/pipe_sampler.h /usr/include/seqan/pipe/pipe_shifter.h /usr/include/seqan/pipe/pipe_source.h /usr/include/seqan/pipe/pipe_tupler.h /usr/include/seqan/pipe/pool_base.h /usr/include/seqan/pipe/pool_mapper.h /usr/include/seqan/pipe/pool_sorter.h /usr/include/seqan/platform.h /usr/include/seqan/random.h /usr/include/seqan/random/random_base.h /usr/include/seqan/random/random_beta.h /usr/include/seqan/score.h /usr/include/seqan/score/score_base.h /usr/include/seqan/score/score_edit.h /usr/include/seqan/score/score_matrix.h /usr/include/seqan/score/score_matrix_data.h /usr/include/seqan/score/score_matrix_io.h /usr/include/seqan/score/score_simple.h /usr/include/seqan/seeds.h /usr/include/seqan/seeds/banded_chain_alignment.h /usr/include/seqan/seeds/banded_chain_alignment_impl.h /usr/include/seqan/seeds/banded_chain_alignment_profile.h /usr/include/seqan/seeds/banded_chain_alignment_scout.h /usr/include/seqan/seeds/banded_chain_alignment_traceback.h /usr/include/seqan/seeds/basic_iter_indirect.h /usr/include/seqan/seeds/seeds_base.h /usr/include/seqan/seeds/seeds_combination.h /usr/include/seqan/seeds/seeds_extension.h /usr/include/seqan/seeds/seeds_global_chaining.h /usr/include/seqan/seeds/seeds_global_chaining_base.h /usr/include/seqan/seeds/seeds_global_chaining_gusfield.h /usr/include/seqan/seeds/seeds_seed_base.h /usr/include/seqan/seeds/seeds_seed_chained.h /usr/include/seqan/seeds/seeds_seed_diagonal.h /usr/include/seqan/seeds/seeds_seed_set_base.h /usr/include/seqan/seeds/seeds_seed_set_non_scored.h /usr/include/seqan/seeds/seeds_seed_set_scored.h /usr/include/seqan/seeds/seeds_seed_set_unordered.h /usr/include/seqan/seeds/seeds_seed_simple.h /usr/include/seqan/seq_io.h /usr/include/seqan/seq_io/fai_index.h /usr/include/seqan/seq_io/genomic_region.h /usr/include/seqan/seq_io/read_embl.h /usr/include/seqan/seq_io/read_genbank.h /usr/include/seqan/sequence.h /usr/include/seqan/sequence/adapt_array_pointer.h /usr/include/seqan/sequence/iter_concat_virtual.h /usr/include/seqan/sequence/segment_base.h /usr/include/seqan/sequence/segment_infix.h /usr/include/seqan/sequence/segment_prefix.h /usr/include/seqan/sequence/segment_suffix.h /usr/include/seqan/sequence/segment_utils.h /usr/include/seqan/sequence/sequence_concatenator.h /usr/include/seqan/sequence/sequence_forwards.h /usr/include/seqan/sequence/sequence_interface.h /usr/include/seqan/sequence/sequence_lexical.h /usr/include/seqan/sequence/sequence_shortcuts.h /usr/include/seqan/sequence/string_alloc.h /usr/include/seqan/sequence/string_array.h /usr/include/seqan/sequence/string_base.h /usr/include/seqan/sequence/string_block.h /usr/include/seqan/sequence/string_cstyle.h /usr/include/seqan/sequence/string_packed.h /usr/include/seqan/sequence/string_packed_old.h /usr/include/seqan/sequence/string_set_base.h /usr/include/seqan/sequence/string_set_concat_direct.h /usr/include/seqan/sequence/string_set_dependent_generous.h /usr/include/seqan/sequence/string_set_dependent_tight.h /usr/include/seqan/sequence/string_set_owner.h /usr/include/seqan/sequence_journaled.h /usr/include/seqan/sequence_journaled/journal_entries_sorted_array.h /usr/include/seqan/sequence_journaled/journal_entry.h /usr/include/seqan/sequence_journaled/sequence_journaled.h /usr/include/seqan/sequence_journaled/sequence_journaled_iterator.h /usr/include/seqan/store.h /usr/include/seqan/store/store_align.h /usr/include/seqan/store/store_align_intervals.h /usr/include/seqan/store/store_all.h /usr/include/seqan/store/store_annotation.h /usr/include/seqan/store/store_base.h /usr/include/seqan/store/store_contig.h /usr/include/seqan/store/store_intervaltree.h /usr/include/seqan/store/store_io.h /usr/include/seqan/store/store_io_gff.h /usr/include/seqan/store/store_io_sam.h /usr/include/seqan/store/store_io_ucsc.h /usr/include/seqan/store/store_library.h /usr/include/seqan/store/store_matepair.h /usr/include/seqan/store/store_read.h /usr/include/seqan/stream.h /usr/include/seqan/stream/file_stream.h /usr/include/seqan/stream/lexical_cast.h /usr/include/seqan/stream/stream_base.h /usr/include/seqan/system.h /usr/include/seqan/system/file_async.h /usr/include/seqan/system/file_directory.h /usr/include/seqan/system/file_forwards.h /usr/include/seqan/system/file_sync.h /usr/include/seqan/system/system_base.h /usr/include/seqan/system/system_forwards.h /usr/include/seqan/version.h This bug has been filed against both packages. If you, the maintainers of the two packages in question, have agreed on which of the packages will resolve the problem please reassign the bug to that package. You may then also register in the BTS that the other package is affected by the bug. -Ralf. PS: for more information about the detection of file overwrite errors of this kind see http://qa.debian.org/dose/file-overwrites.html.
--- End Message ---
--- Begin Message ---Source: seqan2 Source-Version: 2.2.0+dfsg-2 We believe that the bug you reported is fixed in the latest version of seqan2, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 838...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Sascha Steinbiss <sa...@debian.org> (supplier of updated seqan2 package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Sat, 24 Sep 2016 21:48:27 +0000 Source: seqan2 Binary: seqan-apps libseqan2-dev Architecture: source all amd64 Version: 2.2.0+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sa...@debian.org> Description: libseqan2-dev - C++ library for the analysis of biological sequences (development seqan-apps - C++ library for the analysis of biological sequences Closes: 838340 Changes: seqan2 (2.2.0+dfsg-2) unstable; urgency=medium . * Team upload. * Declare Conflicts: with seqan-dev (API incompatible) See https://github.com/seqan/seqan/issues/1820 for upstream discussion. Closes: #838340. * Add CMake modules needed to build projects based on SeqAn. * Add pkg-config file. * Fix some typos in d/copyright. Checksums-Sha1: e1cf35d36658f02afcb1d59b220cb4e9352f96f3 2241 seqan2_2.2.0+dfsg-2.dsc 321c2089ae204d5f51a6b9c0a2916bd78969d7c5 18024 seqan2_2.2.0+dfsg-2.debian.tar.xz 94c75a47273c0cc1a4e245cf3ceae69d53bd8c4f 1176008 libseqan2-dev_2.2.0+dfsg-2_all.deb 9867aa6bde17cdc27544d48dabb5f61a501c328c 140371738 seqan-apps-dbgsym_2.2.0+dfsg-2_amd64.deb 63448def4a5ac9c1856d4d1f34c29e6c7c80151b 9666648 seqan-apps_2.2.0+dfsg-2_amd64.deb Checksums-Sha256: 9c540cf2615f9f5823c6acab4d7c8effdc99366c43c63e8415b118b95f812126 2241 seqan2_2.2.0+dfsg-2.dsc 5cde4ce979100c81dea01f6ad3824d77123060037aba9cc15f21f8ca4e0cfc86 18024 seqan2_2.2.0+dfsg-2.debian.tar.xz 7d194c04aec18b84df6b55691a71139ec222560e8c4442822fcbd95cab002c1a 1176008 libseqan2-dev_2.2.0+dfsg-2_all.deb 4be2cd17a41b6d54b8c64fa1e26c134c39e44858f971ecce1ee06a6f6d771939 140371738 seqan-apps-dbgsym_2.2.0+dfsg-2_amd64.deb 003736e0c347f73a15c9977f557073d194be6b2362b9c3a743eff1e91b92c93b 9666648 seqan-apps_2.2.0+dfsg-2_amd64.deb Files: 8747fa3e6725b558247316e9c980efcc 2241 science optional seqan2_2.2.0+dfsg-2.dsc bb18078ae290c12e3271373352455a81 18024 science optional seqan2_2.2.0+dfsg-2.debian.tar.xz b65ca1f47f42bb6161d75a1582b8bbbf 1176008 libdevel optional libseqan2-dev_2.2.0+dfsg-2_all.deb 7315b8fc05a558ca58a011b2e989d1d5 140371738 debug extra seqan-apps-dbgsym_2.2.0+dfsg-2_amd64.deb ab4c45da011c1cd2be4e210a609dc512 9666648 science optional seqan-apps_2.2.0+dfsg-2_amd64.deb -----BEGIN PGP SIGNATURE----- iQIcBAEBCgAGBQJX53FqAAoJEOjTeuLwn0hy8XEP/jHOA+zgKP5ta14QA+qSfDUn lj7NcLZKKcjUYP+860igyJhz148iiRLBL7mnnj6Pmns+Bk3ZCfqeIbbYRTbdQe3f BrM0yursX0OYyP3IXa0ymWb2PxCYlazMn1mguFYkTgs2ZUO90UNKBN7EoCvFPs5U AtgzD/OpfnYo6VX2AaKXn/+9T0mniw86Bwuvy8jlEn4v3dLjRoVURv88mD6URbb9 s0ahxAoWuzvFbk+zD7y/2UNKQuf3zFM61h5u1hppIc8fHZmJw2Bl7gaMOjXyJcCF YVpaYt93ZsR1e0zFXocFkD6FnzdcVreGt32j0bgYv7AfYJKDF866xxY1vGo1mYLY Xh9fyQ3SboZUzgrSXZNDZ+gi6UDaSfP7i2cLQXNSZ8Zbwkhfdmf+Y37hOZfk6N0m HLleHvH5CvhqyjiUT3kucqlorY6/SuVbfWWXV0TcLEaKfE73beddHuNM6KEjWMB1 Zgn5PP3jWMOVrZoDp9mHnmEOyx7mkXjNeKF2LPIa4CX7E9X2Zwm+h7wMXH3fwWys UKN3zgo1asvQ2P4+OIcLWVeizNOpVnqufqTwgukv1IauWXd3bNPuH01Sx/0umSAM ozJ9Cqu7M7yrjoo4AbVJkStB4R2avJkllSa/UQMWDe/2Mc8R5KIjqSehhqS5EQCC 8jF3oAn7mIy0fFqwq4Uz =72Eb -----END PGP SIGNATURE-----
--- End Message ---
