Hi Sascha,
On Wed, Sep 07, 2016 at 02:21:14PM +0100, Sascha Steinbiss wrote:
>
> It was a missing build-dependency on libboost-timer-dev. I also added the
> necessary build-deps on libdivsufsort and libsparsehash, see git.
Thanks for fixing.
> However, the build still fails with:
>
> In file included from
> /build/salmon-0.7.1+ds1/include/UtilityFunctions.hpp:5:0,
> from /build/salmon-0.7.1+ds1/include/SBModel.hpp:7,
> from /build/salmon-0.7.1+ds1/src/SBModel.cpp:1:
> /build/salmon-0.7.1+ds1/include/SalmonUtils.hpp:32:27: fatal error:
> RapMapUtils.hpp: No such file or directory
>
> which suggests that salmon also uses parts of the previous embedded or
> downloaded RapMap source tree to build salmon, not just the binary.
> I’m not familiar enough with RapMap’s intended use to decide whether we
> should introduce a rapmap-dev package given that it doesn’t seem to build a
> library. Any hints?
Possible quick-n-dirty, solution: Just add a code copy of
RapMapUtils.hpp either as quilt patch or in debian/rapmap and copy over
in build process. This might help us whether the new version would
really fix the original build issue of #835720.
Proper solution is probably to contact upstream (I think its the same
for rapmap and salmon) how to sensibly solve this issue.
Kind regards
Andreas.
--
http://fam-tille.de
