Your message dated Thu, 18 Aug 2016 00:19:27 +0000 with message-id <e1bab3p-00064z...@franck.debian.org> and subject line Bug#834631: fixed in mcmcpack 1.3-6-2 has caused the Debian Bug report #834631, regarding mcmcpack: FTBFS: ERROR: dependency 'mcmc' is not available for package 'MCMCpack' to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 834631: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=834631 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: mcmcpack Version: 1.3-6-1 Severity: serious Justification: fails to build from source User: reproducible-bui...@lists.alioth.debian.org Usertags: ftbfs X-Debbugs-Cc: reproducible-bui...@lists.alioth.debian.org Dear Maintainer, mcmcpack fails to build from source in unstable/amd64: [..] Preparing to unpack .../51-gfortran-6_6.1.1-12_amd64.deb ... Unpacking gfortran-6 (6.1.1-12) ... Selecting previously unselected package gfortran. Preparing to unpack .../52-gfortran_4%3a6.1.1-1_amd64.deb ... Unpacking gfortran (4:6.1.1-1) ... Selecting previously unselected package libblas-dev. Preparing to unpack .../53-libblas-dev_3.6.1-2_amd64.deb ... Unpacking libblas-dev (3.6.1-2) ... Selecting previously unselected package liblapack-dev. Preparing to unpack .../54-liblapack-dev_3.6.1-2_amd64.deb ... Unpacking liblapack-dev (3.6.1-2) ... Selecting previously unselected package libtinfo-dev:amd64. Preparing to unpack .../55-libtinfo-dev_6.0+20160625-1_amd64.deb ... Unpacking libtinfo-dev:amd64 (6.0+20160625-1) ... Selecting previously unselected package libncurses5-dev:amd64. Preparing to unpack .../56-libncurses5-dev_6.0+20160625-1_amd64.deb ... Unpacking libncurses5-dev:amd64 (6.0+20160625-1) ... Selecting previously unselected package libreadline6-dev:amd64. Preparing to unpack .../57-libreadline6-dev_6.3-8+b4_amd64.deb ... Unpacking libreadline6-dev:amd64 (6.3-8+b4) ... Selecting previously unselected package libreadline-dev:amd64. Preparing to unpack .../58-libreadline-dev_6.3-8+b4_amd64.deb ... Unpacking libreadline-dev:amd64 (6.3-8+b4) ... Selecting previously unselected package libjpeg62-turbo-dev:amd64. Preparing to unpack .../59-libjpeg62-turbo-dev_1%3a1.5.0-1_amd64.deb ... Unpacking libjpeg62-turbo-dev:amd64 (1:1.5.0-1) ... Selecting previously unselected package libjpeg-dev. Preparing to unpack .../60-libjpeg-dev_1%3a1.5.0-1_all.deb ... Unpacking libjpeg-dev (1:1.5.0-1) ... Selecting previously unselected package libpcre16-3:amd64. Preparing to unpack .../61-libpcre16-3_2%3a8.39-1_amd64.deb ... Unpacking libpcre16-3:amd64 (2:8.39-1) ... Selecting previously unselected package libpcre32-3:amd64. Preparing to unpack .../62-libpcre32-3_2%3a8.39-1_amd64.deb ... Unpacking libpcre32-3:amd64 (2:8.39-1) ... Selecting previously unselected package libpcrecpp0v5:amd64. Preparing to unpack .../63-libpcrecpp0v5_2%3a8.39-1_amd64.deb ... Unpacking libpcrecpp0v5:amd64 (2:8.39-1) ... Selecting previously unselected package libpcre3-dev:amd64. Preparing to unpack .../64-libpcre3-dev_2%3a8.39-1_amd64.deb ... Unpacking libpcre3-dev:amd64 (2:8.39-1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../65-zlib1g-dev_1%3a1.2.8.dfsg-2+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.8.dfsg-2+b1) ... Selecting previously unselected package libpng-dev:amd64. Preparing to unpack .../66-libpng-dev_1.6.24-2_amd64.deb ... Unpacking libpng-dev:amd64 (1.6.24-2) ... Selecting previously unselected package libbz2-dev:amd64. Preparing to unpack .../67-libbz2-dev_1.0.6-8_amd64.deb ... Unpacking libbz2-dev:amd64 (1.0.6-8) ... Selecting previously unselected package liblzma-dev:amd64. Preparing to unpack .../68-liblzma-dev_5.1.1alpha+20120614-2.1_amd64.deb ... Unpacking liblzma-dev:amd64 (5.1.1alpha+20120614-2.1) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../69-icu-devtools_57.1-2_amd64.deb ... Unpacking icu-devtools (57.1-2) ... Selecting previously unselected package libasan2:amd64. Preparing to unpack .../70-libasan2_5.4.1-1_amd64.deb ... Unpacking libasan2:amd64 (5.4.1-1) ... Selecting previously unselected package libmpx0:amd64. Preparing to unpack .../71-libmpx0_5.4.1-1_amd64.deb ... Unpacking libmpx0:amd64 (5.4.1-1) ... Selecting previously unselected package libgcc-5-dev:amd64. Preparing to unpack .../72-libgcc-5-dev_5.4.1-1_amd64.deb ... Unpacking libgcc-5-dev:amd64 (5.4.1-1) ... Selecting previously unselected package libstdc++-5-dev:amd64. Preparing to unpack .../73-libstdc++-5-dev_5.4.1-1_amd64.deb ... Unpacking libstdc++-5-dev:amd64 (5.4.1-1) ... Selecting previously unselected package libicu-dev. Preparing to unpack .../74-libicu-dev_57.1-2_amd64.deb ... Unpacking libicu-dev (57.1-2) ... Selecting previously unselected package cdbs. Preparing to unpack .../75-cdbs_0.4.142_all.deb ... Unpacking cdbs (0.4.142) ... Selecting previously unselected package r-base-dev. Preparing to unpack .../76-r-base-dev_3.3.1-1_all.deb ... Unpacking r-base-dev (3.3.1-1) ... Selecting previously unselected package r-cran-lattice. Preparing to unpack .../77-r-cran-lattice_0.20-33-1_amd64.deb ... Unpacking r-cran-lattice (0.20-33-1) ... Selecting previously unselected package r-cran-coda. Preparing to unpack .../78-r-cran-coda_0.18-1-1_all.deb ... Unpacking r-cran-coda (0.18-1-1) ... Selecting previously unselected package r-cran-mass. Preparing to unpack .../79-r-cran-mass_7.3-45-1_amd64.deb ... Unpacking r-cran-mass (7.3-45-1) ... Selecting previously unselected package r-cran-sparsem. Preparing to unpack .../80-r-cran-sparsem_1.7-1_amd64.deb ... Unpacking r-cran-sparsem (1.7-1) ... Selecting previously unselected package r-cran-matrix. Preparing to unpack .../81-r-cran-matrix_1.2-6-1_amd64.deb ... Unpacking r-cran-matrix (1.2-6-1) ... Selecting previously unselected package r-cran-matrixmodels. Preparing to unpack .../82-r-cran-matrixmodels_0.4-1-1_all.deb ... Unpacking r-cran-matrixmodels (0.4-1-1) ... Selecting previously unselected package r-cran-quantreg. Preparing to unpack .../83-r-cran-quantreg_5.26-1_amd64.deb ... Unpacking r-cran-quantreg (5.26-1) ... Selecting previously unselected package r-bioc-biocgenerics. Preparing to unpack .../84-r-bioc-biocgenerics_0.18.0-1_all.deb ... Unpacking r-bioc-biocgenerics (0.18.0-1) ... Selecting previously unselected package r-cran-xml. Preparing to unpack .../85-r-cran-xml_3.98-1.4-2_amd64.deb ... Unpacking r-cran-xml (3.98-1.4-2) ... Selecting previously unselected package r-bioc-graph. Preparing to unpack .../86-r-bioc-graph_1.50.0-1_amd64.deb ... Unpacking r-bioc-graph (1.50.0-1) ... Setting up cdbs (0.4.142) ... Setting up libbz2-dev:amd64 (1.0.6-8) ... Setting up libjpeg62-turbo:amd64 (1:1.5.0-1) ... Setting up libmpx0:amd64 (5.4.1-1) ... Processing triggers for mime-support (3.60) ... Setting up libpng16-16:amd64 (1.6.24-2) ... Setting up libjbig0:amd64 (2.1-3.1) ... Setting up libcurl3:amd64 (7.50.1-1) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libblas-common (3.6.1-2) ... Setting up libgfortran3:amd64 (6.1.1-12) ... Setting up libgfortran-6-dev:amd64 (6.1.1-12) ... Setting up unzip (6.0-20) ... Setting up libtinfo-dev:amd64 (6.0+20160625-1) ... Setting up libasan2:amd64 (5.4.1-1) ... Setting up libreadline6-dev:amd64 (6.3-8+b4) ... Setting up libdatrie1:amd64 (0.2.10-2) ... Setting up libtiff5:amd64 (4.0.6-2) ... Setting up ucf (3.0036) ... Setting up zip (3.0-11) ... Setting up libfreetype6:amd64 (2.6.3-3+b1) ... Setting up libgraphite2-3:amd64 (1.3.8-1) ... Setting up libncurses5-dev:amd64 (6.0+20160625-1) ... Setting up libpixman-1-0:amd64 (0.33.6-1) ... Setting up libblas3 (3.6.1-2) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Processing triggers for libc-bin (2.23-4) ... Setting up libgcc-5-dev:amd64 (5.4.1-1) ... Processing triggers for systemd (231-3) ... Setting up openssl (1.0.2h-1) ... Setting up libreadline-dev:amd64 (6.3-8+b4) ... Processing triggers for man-db (2.7.5-1) ... Setting up libpcrecpp0v5:amd64 (2:8.39-1) ... Setting up libpcre32-3:amd64 (2:8.39-1) ... Setting up icu-devtools (57.1-2) ... Setting up libpcre16-3:amd64 (2:8.39-1) ... Setting up libtcl8.6:amd64 (8.6.6+dfsg-1) ... Setting up libthai-data (0.1.25-1) ... Setting up libjpeg62-turbo-dev:amd64 (1:1.5.0-1) ... Setting up liblzma-dev:amd64 (5.1.1alpha+20120614-2.1) ... Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ... Setting up x11-common (1:7.7+16) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up xdg-utils (1.1.1-1) ... Setting up ca-certificates (20160104) ... Setting up libx11-data (2:1.6.3-1) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up libstdc++-5-dev:amd64 (5.4.1-1) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2+b1) ... Setting up libpaper1:amd64 (1.1.24+nmu4) ... Creating config file /etc/papersize with new version Setting up gfortran-6 (6.1.1-12) ... Setting up libpaper-utils (1.1.24+nmu4) ... Setting up libpcre3-dev:amd64 (2:8.39-1) ... Setting up fontconfig-config (2.11.0-6.5) ... Setting up liblapack3 (3.6.1-2) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libharfbuzz0b:amd64 (1.2.7-1+b1) ... Setting up libthai0:amd64 (0.1.25-1) ... Setting up libicu-dev (57.1-2) ... Setting up libjpeg-dev (1:1.5.0-1) ... Setting up libice6:amd64 (2:1.0.9-1+b1) ... Setting up libpng-dev:amd64 (1.6.24-2) ... Setting up libxcb1:amd64 (1.11.1-1.1) ... Setting up gfortran (4:6.1.1-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libfontconfig1:amd64 (2.11.0-6.5) ... Setting up libsm6:amd64 (2:1.2.2-1+b1) ... Setting up libxcb-render0:amd64 (1.11.1-1.1) ... Setting up libblas-dev (3.6.1-2) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode Setting up libx11-6:amd64 (2:1.6.3-1) ... Setting up libxcb-shm0:amd64 (1.11.1-1.1) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up libxrender1:amd64 (1:0.9.9-2) ... Setting up libxft2:amd64 (2.3.2-1) ... Setting up fontconfig (2.11.0-6.5) ... Regenerating fonts cache... done. Setting up liblapack-dev (3.6.1-2) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up libxss1:amd64 (1:1.2.2-1) ... Setting up libpango-1.0-0:amd64 (1.40.1-1) ... Setting up libcairo2:amd64 (1.14.6-1+b1) ... Setting up libtk8.6:amd64 (8.6.6-1) ... Setting up libpangoft2-1.0-0:amd64 (1.40.1-1) ... Setting up libpangocairo-1.0-0:amd64 (1.40.1-1) ... Setting up r-base-core (3.3.1-1+b1) ... Creating config file /etc/R/Renviron with new version Setting up r-base-dev (3.3.1-1) ... Setting up r-bioc-biocgenerics (0.18.0-1) ... Setting up r-cran-sparsem (1.7-1) ... Setting up r-cran-mass (7.3-45-1) ... Setting up r-cran-xml (3.98-1.4-2) ... Setting up r-bioc-graph (1.50.0-1) ... Setting up r-cran-lattice (0.20-33-1) ... Setting up r-cran-coda (0.18-1-1) ... Setting up r-cran-matrix (1.2-6-1) ... Setting up r-cran-matrixmodels (0.4-1-1) ... Setting up r-cran-quantreg (5.26-1) ... Setting up mcmcpack-build-deps (1.3-6-1) ... Processing triggers for libc-bin (2.23-4) ... Processing triggers for systemd (231-3) ... Processing triggers for ca-certificates (20160104) ... Updating certificates in /etc/ssl/certs... 173 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. ************************************************************************************** ** Environment ** ************************************************************************************** PATH=/home/lamby/git/projects/dotfiles/dotfiles/..//bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin HOSTNAME=bae20ee1ce71 TERM=xterm PAGER=more DISPLAY=:0 DOCKER_IMAGE=lamby-debian-sid DEB_BUILD_OPTIONS=parallel=9 PIP_DOWNLOAD_CACHE=/home/lamby/.cache/pip HOME=/home/lamby LOGNAME=lamby SHLVL=1 PWD=/home/lamby/temp/cdt.20160817165739.rwqUq8LYwU.db.mcmcpack/mcmcpack-1.3-6 OLDPWD=/home/lamby/temp/cdt.20160817165739.rwqUq8LYwU.db.mcmcpack GPG_TTY=/dev/console QUILT_PATCHES=debian/patches QUILT_NO_DIFF_INDEX=1 QUILT_REFRESH_ARGS=-p ab --no-timestamps --no-index DEBEMAIL=la...@debian.org DEBFULLNAME=Chris Lamb EDITOR=vim LESS=-cgiFx4M GPG_KEY=1E953E27D4311E58 BLASTER=A220 I5 D1 H5 P330 T6 _=/usr/bin/env ************************************************************************************** ** Building mcmcpack 1.3-6-1 on amd64 ** ************************************************************************************** dpkg-buildpackage -rfakeroot -D -us -uc -b dpkg-buildpackage: info: source package mcmcpack dpkg-buildpackage: info: source version 1.3-6-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Chris Lawrence <lawre...@debian.org> dpkg-source --before-build mcmcpack-1.3-6 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh_listpackages: -s/--same-arch is deprecated; please use -a/--arch instead test -x debian/rules dh_clean if test -d src; then \ find src -regex ".*\.o" | \ xargs --no-run-if-empty -r rm; \ fi rm -f config.log config.status rm -vf src/Makevars debian/rules build dh_listpackages: -s/--same-arch is deprecated; please use -a/--arch instead test -x debian/rules mkdir -p "." fakeroot debian/rules binary dh_listpackages: -s/--same-arch is deprecated; please use -a/--arch instead test -x debian/rules dh_testroot dh_prep dh_installdirs -A mkdir -p "." dh_installdirs usr/lib/R/site-library echo "R:Depends=r-base-core (>= 3.3.1-1), r-api-3" >> debian/r-cran-mcmcpack.substvars if test -f /usr/bin/xvfb-run; then \ MAKEFLAGS="LDFLAGS=-Wl,-z,relro" xvfb-run -a \ R CMD INSTALL -l /home/lamby/temp/cdt.20160817165739.rwqUq8LYwU.db.mcmcpack/mcmcpack-1.3-6/debian/r-cran-mcmcpack/usr/lib/R/site-library --clean \ . \ "--built-timestamp=\"Tue, 16 Aug 2016 20:45:12 -0400\"" \ ; \ else \ MAKEFLAGS="LDFLAGS=-Wl,-z,relro" R CMD INSTALL -l /home/lamby/temp/cdt.20160817165739.rwqUq8LYwU.db.mcmcpack/mcmcpack-1.3-6/debian/r-cran-mcmcpack/usr/lib/R/site-library \ --clean . \ "--built-timestamp=\"Tue, 16 Aug 2016 20:45:12 -0400\"" \ ; \ fi ERROR: dependency 'mcmc' is not available for package 'MCMCpack' * removing '/home/lamby/temp/cdt.20160817165739.rwqUq8LYwU.db.mcmcpack/mcmcpack-1.3-6/debian/r-cran-mcmcpack/usr/lib/R/site-library/MCMCpack' /usr/share/R/debian/r-cran.mk:98: recipe for target 'R_any_arch' failed make: *** [R_any_arch] Error 1 [..] The full build log is attached. Regards, -- ,''`. : :' : Chris Lamb `. `'` la...@debian.org / chris-lamb.co.uk `-
mcmcpack.1.3-6-1.unstable.amd64.log.txt.gz
Description: Binary data
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--- Begin Message ---Source: mcmcpack Source-Version: 1.3-6-2 We believe that the bug you reported is fixed in the latest version of mcmcpack, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 834...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Chris Lawrence <lawre...@debian.org> (supplier of updated mcmcpack package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Wed, 17 Aug 2016 17:11:33 -0400 Source: mcmcpack Binary: r-cran-mcmcpack Architecture: source amd64 Version: 1.3-6-2 Distribution: unstable Urgency: medium Maintainer: Chris Lawrence <lawre...@debian.org> Changed-By: Chris Lawrence <lawre...@debian.org> Description: r-cran-mcmcpack - R routines for Markov chain Monte Carlo model estimation Closes: 834631 Changes: mcmcpack (1.3-6-2) unstable; urgency=medium . * Fix missing dependency on r-cran-mcmc. (Closes: #834631) Checksums-Sha1: 7b0cbdf003b6103c14f99f5caa6eb06f6d05a784 1814 mcmcpack_1.3-6-2.dsc 6f171002a9e24aeff568031894fd3f7f010e83ac 4096 mcmcpack_1.3-6-2.debian.tar.xz 70081501226d915170c65a4acef46738ddc836d0 6015106 r-cran-mcmcpack-dbgsym_1.3-6-2_amd64.deb 3ecddd0a54a1109378d6441af5dac8d3b5a4b9f4 1226288 r-cran-mcmcpack_1.3-6-2_amd64.deb Checksums-Sha256: d3089fef98043248552a45b9436c8b77402dd0bafb7dc8a66b55fa6fd2a4ec70 1814 mcmcpack_1.3-6-2.dsc e957aee24000e9b3b4e292ffa709ad0d2151047fea2402a72dd75d416be34aa2 4096 mcmcpack_1.3-6-2.debian.tar.xz 566f80388590f4d572f2ace3f43113607287a5685ec3db25ebc174897dde313b 6015106 r-cran-mcmcpack-dbgsym_1.3-6-2_amd64.deb 00f3ff02812a63b45fed5294e94ba7ef4775489305b0b011f256a0639b9a50e8 1226288 r-cran-mcmcpack_1.3-6-2_amd64.deb Files: 74604d3ef9185eb103713afb4a12fb13 1814 gnu-r optional mcmcpack_1.3-6-2.dsc bec11988119ae8d690d9e70a971e65d9 4096 gnu-r optional mcmcpack_1.3-6-2.debian.tar.xz 31348ee0eae130649ab3b25cff41d23e 6015106 debug extra r-cran-mcmcpack-dbgsym_1.3-6-2_amd64.deb 32a3696980adc77ac3348c73ce9a9740 1226288 gnu-r optional r-cran-mcmcpack_1.3-6-2_amd64.deb -----BEGIN PGP SIGNATURE----- iQIcBAEBCAAGBQJXtPxGAAoJEMn8Qbj5jGbPmlEQAIpjev2rEroJEsrxLqni6SBA KvecRYX1KNRrnPlzt4ZIWWCLJjyaLKJ+qnyh9vMxt7fLB1x+QIriTmArpvUt4gO6 /ui9orSuoZ3XwmJ+EANR7i/pzxxEDkB58Xs62Uz6Ts6al+XVBkjXa2mzWRxrm9Ji +di1EoMp5leO3lJKEIABccapkww+zbEwcZ3JUQ2Cpyo7cxUPmO72gH/DufDQm+FM s5ySuX0hwEicGlnoVKlgIxJmrTa1jHPsODFVFLuB6KBzBgdVhTU7NpBRYfmd7997 KfUk0DhmHfz4dPIS19zCR/nGzcc2aK2y2QiyDFNfHNYsefo9fmd6/RfDhcinzq0x 1ZallfaRHCVzbzsUZhiuXHvPAhueoX0SWRJqOYWH6Nr/21hVYI+6eJksR4aokabw XLjqKxy+qQ2JT7dRljN9UugsGX9xPWsQy2Nv0/vU3soPi6YSDcVTGq4m5p3bV04V h77BflfyM+Zq2Y4BteTtkgoz2SOhplQCssemkrR65+/ywhXjW9kpVxTos4PTJbp+ 8C36L1rQ5uyQKvolxZQdLsKsi+URkMbc6UjLpM/XlVjZOAVCT8l/i/aCkjnSvbPB fv+YEXYopNcupuefC7pRFCkawJdULs1dgCBmUYTB9lhqR6sx875FwZgOUUGrTNar 9Mk74nHRw6CA7k0wnrcF =xnZH -----END PGP SIGNATURE-----
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