Your message dated Mon, 15 Aug 2016 11:19:10 +0000 with message-id <e1bzfvd-0004k7...@franck.debian.org> and subject line Bug#811866: fixed in hyphy 2.2.6+dfsg-5 has caused the Debian Bug report #811866, regarding hyphy: FTBFS with GCC 6: no matching function for call to to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 811866: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=811866 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: hyphy Version: 2.2.6+dfsg-3 Severity: important User: debian-...@lists.debian.org Usertags: ftbfs-gcc-6 gcc-6-no-match This package fails to build with GCC 6. GCC 6 has not been released yet, but it's expected that GCC 6 will become the default compiler for stretch. Note that only the first error is reported; there might be more. You can find a snapshot of GCC 6 in experimental. To build with GCC 6, you can set CC=gcc-6 CXX=g++-6 explicitly. You may be able to find out more about this issue at https://gcc.gnu.org/gcc-6/changes.html > sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on dl580gen9-02.hlinux ... > [ 35%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/gui/HYModelWindow.cpp.o > /usr/bin/c++ -DGDK_PIXBUF_ENABLE_BACKEND > -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ > -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ > -D__HYPHY_64__ -D__HYPHY_GTK__ -D__UNIX__ > -I/<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/core/include > -I/<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/lib/Link > -I/<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/new/include > -I/<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/gui/include > -I/<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/gui/include/Components > -I/<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/gui/include/WindowClasses > -I/<<BUILDDIR>>/hyphy-2.2.6+dfsg/contrib/gtest-1.7.0/include > -I/<<BUILDDIR>>/hyphy-2.2.6+dfsg/tests/gtests -I/usr/lib/openmpi/include > -I/usr/lib/openmpi/include/openmpi -I/usr/include/gtk-2.0 > -I/usr/include/freetype2 -I/usr/include/glib-2.0 > -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 > -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 > -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<<BUILDDIR>>/hyphy-2.2 > .6+dfsg/src/gui/gtk/include > -I/<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/gui/gtk/include/Components > -I/Developer/Headers/FlatCarbon -g -O2 -fstack-protector-strong -Wformat > -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char > -O3 -msse3 -o CMakeFiles/HYPHYGTK.dir/src/gui/HYModelWindow.cpp.o -c > /<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/gui/HYModelWindow.cpp > /<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/gui/HYModelWindow.cpp: In member function > 'virtual bool _HYModelWindow::ProcessEvent(_HYEvent*)': > /<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/gui/HYModelWindow.cpp:860:40: error: no > matching function for call to '_Formula::_Formula(_String&, NULL, bool)' > _Formula f (cText,nil,false); > ^ > > In file included from > /<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/core/include/parser.h:54:0, > from > /<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/core/include/batchlan.h:44, > from > /<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/gui/include/Components/HYTableComponent.h:13, > from > /<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/gui/include/WindowClasses/HYModelWindow.h:13, > from > /<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/gui/HYModelWindow.cpp:41: > /<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/core/include/formula.h:88:5: note: > candidate: _Formula::_Formula(_PMathObj, bool) > _Formula (_PMathObj, bool isAVar = false); > ^~~~~~~~ > > /<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/core/include/formula.h:88:5: note: > candidate expects 2 arguments, 3 provided > /<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/core/include/formula.h:87:5: note: > candidate: _Formula::_Formula(_String&, _VariableContainer*, _String*) > _Formula (_String&,_VariableContainer* theParent=nil,_String* > errorString = nil); > ^~~~~~~~ > > /<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/core/include/formula.h:87:5: note: no > known conversion for argument 3 from 'bool' to '_String*' > /<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/core/include/formula.h:86:5: note: > candidate: _Formula::_Formula() > _Formula (void); > ^~~~~~~~ > > /<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/core/include/formula.h:86:5: note: > candidate expects 0 arguments, 3 provided > /<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/core/include/formula.h:79:9: note: > candidate: _Formula::_Formula(const _Formula&) > class _Formula // a computational formula > ^~~~~~~~ > > /<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/core/include/formula.h:79:9: note: > candidate expects 1 argument, 3 provided > CMakeFiles/HYPHYGTK.dir/build.make:785: recipe for target > 'CMakeFiles/HYPHYGTK.dir/src/gui/HYModelWindow.cpp.o' failed -- Martin Michlmayr Linux for HPE Helion, Hewlett Packard Enterprise
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--- Begin Message ---Source: hyphy Source-Version: 2.2.6+dfsg-5 We believe that the bug you reported is fixed in the latest version of hyphy, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 811...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated hyphy package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Mon, 15 Aug 2016 12:44:58 +0200 Source: hyphy Binary: hyphygui hyphy-pt hyphy-mpi hyphy-common python-hyphy python3-hyphy Architecture: source all amd64 Version: 2.2.6+dfsg-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: hyphy-common - Hypothesis testing using Phylogenies (common files) hyphy-mpi - Hypothesis testing using Phylogenies (MPI version) hyphy-pt - Hypothesis testing using Phylogenies (pthreads version) hyphygui - Hypothesis testing using Phylogenies (GTK+ gui) python-hyphy - Hypothesis testing using Phylogenies (Python 2 module) python3-hyphy - Hypothesis testing using Phylogenies (Python 3 module) Closes: 811866 Changes: hyphy (2.2.6+dfsg-5) unstable; urgency=medium . * Fix error: narrowing conversion from 'double' to 'unsigned char' * Fix error: replacing false with nil Closes: #811866 Checksums-Sha1: c495b4e799bd23f3e55d9cbf9dadbd0157b42025 2348 hyphy_2.2.6+dfsg-5.dsc 32e9d396599459bd33564fff68a7202f253abbcc 13396 hyphy_2.2.6+dfsg-5.debian.tar.xz 7452746bd2dbdd3ec35cada486a760b0e180ef16 582978 hyphy-common_2.2.6+dfsg-5_all.deb 8749b11dbd8c780b7219e0393e3ecdb4e5746925 2962720 hyphy-mpi-dbgsym_2.2.6+dfsg-5_amd64.deb 14739658354aa3ace4328a0c5a4c864d8ee90d94 764952 hyphy-mpi_2.2.6+dfsg-5_amd64.deb b15b8add40565e1e683a9560ad90705f8d35dc4d 1784926 hyphy-pt-dbgsym_2.2.6+dfsg-5_amd64.deb 9c650e414930316f5e0cee4d8703e659005f52a3 737426 hyphy-pt_2.2.6+dfsg-5_amd64.deb 7fde7f8afcfb32c36ffb192777e8e43cfd12c14e 3228970 hyphygui-dbgsym_2.2.6+dfsg-5_amd64.deb 53465c044f80eeedc27451f32f68d1f433de45df 1250888 hyphygui_2.2.6+dfsg-5_amd64.deb 9f8b2d3476ab401a94a01011aca9c67b34461167 1867340 python-hyphy-dbgsym_2.2.6+dfsg-5_amd64.deb c15bce2172b7fde9e7b67f53dac292ebb618ae25 793380 python-hyphy_2.2.6+dfsg-5_amd64.deb bb496a8005aab99756bcae287a312dfeab0ce97d 1875626 python3-hyphy-dbgsym_2.2.6+dfsg-5_amd64.deb 734dff33dabfdc11de1b2306804126b6206a92bc 805950 python3-hyphy_2.2.6+dfsg-5_amd64.deb Checksums-Sha256: a53d34c96471748969c8778c71858c8e3629da9bc17bca0fb672d3f4c99a95e0 2348 hyphy_2.2.6+dfsg-5.dsc 7a61187830cd745e1e6f3ccc7ec97c2cdbb2a730c5d374b5a4dfcfe0f4af1cf8 13396 hyphy_2.2.6+dfsg-5.debian.tar.xz 81fd34186cec7787276c0ba4e8a38b9879bd8b3488820f13415799a787823880 582978 hyphy-common_2.2.6+dfsg-5_all.deb 32820652a6a8d24bcf130a0f20e582069e133b2f171c682f48bfb6e2f7897803 2962720 hyphy-mpi-dbgsym_2.2.6+dfsg-5_amd64.deb bfdd6f79257efd5e1b5c717427cd156bf093048b1f6d3e23753fcb2b3f842648 764952 hyphy-mpi_2.2.6+dfsg-5_amd64.deb e6f871b1e77a9d91584f95ce92d5d4333947a03aea6e780bcda3f9d9162c1aae 1784926 hyphy-pt-dbgsym_2.2.6+dfsg-5_amd64.deb 6204ad6b58b58d7729bb6a2b84c67b2e08324473c0a4dd6dd92b77e16b86ab49 737426 hyphy-pt_2.2.6+dfsg-5_amd64.deb 90e5d25799b7e403f050590fc23f8b79050865ee35cdf94dec16026d2c925658 3228970 hyphygui-dbgsym_2.2.6+dfsg-5_amd64.deb 65ad342d43f43c4ec560cda479976b0e5f5022feb0372d9c5a3cc6ebb9e7429b 1250888 hyphygui_2.2.6+dfsg-5_amd64.deb f68e6e6445e7db29ef7d254aa5d136881a72ac1189a3f05dd986b5689f7b816c 1867340 python-hyphy-dbgsym_2.2.6+dfsg-5_amd64.deb e7eacf2603c90554109c4406413b18179dbc5044f452aab9d3fe3d724511fd14 793380 python-hyphy_2.2.6+dfsg-5_amd64.deb ba461691cb8728c2d698576bb956d162a94fa0d985d196e78301d08e65150013 1875626 python3-hyphy-dbgsym_2.2.6+dfsg-5_amd64.deb 950ac1878a5ca25baab58ac760e58241848f97c7e82dee503216bfde18294331 805950 python3-hyphy_2.2.6+dfsg-5_amd64.deb Files: c03e08a7722ffb6a037a8f7933ea84c5 2348 science optional hyphy_2.2.6+dfsg-5.dsc 282e097a3bd8c6c5b9a09ee9b63db694 13396 science optional hyphy_2.2.6+dfsg-5.debian.tar.xz 8a3a2968e4454b39166403b602d7e516 582978 science optional hyphy-common_2.2.6+dfsg-5_all.deb 1557ba8260e8ff39d054b914ed29752d 2962720 debug extra hyphy-mpi-dbgsym_2.2.6+dfsg-5_amd64.deb 40707ab37cc578f46a73b2219e542bd9 764952 science optional hyphy-mpi_2.2.6+dfsg-5_amd64.deb c8f2790410ecdd2fe225e9bc69265440 1784926 debug extra hyphy-pt-dbgsym_2.2.6+dfsg-5_amd64.deb 8f1e6b8ce6b79f84014bc578a29b1e5f 737426 science optional hyphy-pt_2.2.6+dfsg-5_amd64.deb 24e6e0a97f5ef91776e20d94bc36f94a 3228970 debug extra hyphygui-dbgsym_2.2.6+dfsg-5_amd64.deb 1369c8fe33cf42af250f41c976597ba7 1250888 science optional hyphygui_2.2.6+dfsg-5_amd64.deb e6c81edfca8df3c110a71238cfe6068f 1867340 debug extra python-hyphy-dbgsym_2.2.6+dfsg-5_amd64.deb cb71c511dca317148fc80da8c2f9ad6f 793380 python optional python-hyphy_2.2.6+dfsg-5_amd64.deb 9d0f2ca86e47a10874d4be064d33f5bd 1875626 debug extra python3-hyphy-dbgsym_2.2.6+dfsg-5_amd64.deb d46324890b7e5e27d32229d40814e423 805950 python optional python3-hyphy_2.2.6+dfsg-5_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJXsaEcAAoJEFeKBJTRxkbR4HsP+wdb9J69DzzVMrvbrJLMR617 +WIlZyZ+dWDJEBhaWN+3lh1YTIg7IiwMs24DNv+coVwvOh5Tb05veD1Zv3PUtcL3 TC3Y7C4jViPK2lb4yhfbXeGdouFpoAX5iuM7WAGjDBDrPoykUUTz5PBSAVF56PQ3 wMtai808TRG/9zg0Cx5EZ5KiQ2DYikhkLOSPrllZFRnZR9yn8QedwX7CMEi7whSr zcOgDGlH2HXh80gucbVgzGXn0K/7smECuT17mv+sWUwAWHXi7hWSHfo1QSP/qXKu NqrkFIH+A7RYRBYmhGBWSA8fQXTr8f2cyeaVJITDZsDv4/ZsB5PjYy0zQBI7HHlb JWOJjDK7oO5GbMYsIqooevFgcuB1NT6/gx9h62XRk+U/VOaCqLqhb9b4jyOqxtgn Aeg+TC//13yG06yShqljXUMbejejtpICvAjCMi/MT5ONWpb8EA9KmmPnTBropwCm 4D4fHRFsenakbF/znTVltOpZOrUgQ1lESPtZk37LaapkI6161rp6o9oDxqQn3L3s f0R5y3ohH9bV7bMrlIk/LKS45YoNjC8fct4S15YyidAb5P7VwDvI/mjQ93M3SSxv LZPUkeyQWQl6i5IPQXlQCbz4FurJL/T7cwGc7WRME7Usn8oQxNbQlxIkCSfh3oSe f5CkNBK8GIW6u58pE4fq =JRur -----END PGP SIGNATURE-----
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