Your message dated Fri, 12 Aug 2016 11:34:17 +0000 with message-id <e1byajb-0002lb...@franck.debian.org> and subject line Bug#816569: fixed in mrs 6.0.5+dfsg-2 has caused the Debian Bug report #816569, regarding mrs: FTBFS with GCC 6: was not declared in this scope to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 816569: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=816569 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: mrs Version: 6.0.5+dfsg-1 Severity: normal User: debian-...@lists.debian.org Usertags: ftbfs-gcc-6 gcc-6-not-declared This package fails to build with GCC 6. GCC 6 has not been released yet, but it's expected that GCC 6 will become the default compiler for stretch. You can find a snapshot of GCC 6 in experimental. To build with GCC 6, you can set CC=gcc-6 CXX=g++-6 explicitly. You may be able to find out more about this issue at https://gcc.gnu.org/gcc-6/changes.html > sbuild (Debian sbuild) 0.68.0 (15 Jan 2016) on dl580gen9-02.hlinux ... > >> src/M6Utilities.cpp > >> src/M6WSBlast.cpp > >> src/M6WSSearch.cpp > src/M6Matrix.cpp:319:33: error: 'log' was not declared in this scope > kMPam250ScalingFactor = log(2.f) / 3.0f, > ^ > GNUmakefile:104: recipe for target 'obj/M6Matrix.o' failed > make[1]: *** [obj/M6Matrix.o] Error 1 > make[1]: *** Waiting for unfinished jobs.... > src/M6Databank.cpp: In member function 'void > M6DatabankImpl::GetInfo(M6DatabankInfo&)': > src/M6Databank.cpp:1424:94: warning: narrowing conversion of > 'boost::filesystem::file_size(path)' from 'uintmax_t {aka long unsigned int}' > to 'int64 {aka long int}' inside { } [-Wnarrowing] > M6IndexInfo info = { desc.mName, desc.mDesc, desc.mType, > desc.mIndex->size(), fs::file_size(path) }; > > ~~~~~~~~~~~~~^~~~~~ > src/M6Parser.cpp: In static member function 'static M6ParserImpl* > M6ParserImpl::GetObject(SV*)': > src/M6Parser.cpp:417:73: warning: null argument where non-null required > (argument 2) [-Wnonnull] > if (tmp != 0 and strcmp(kM6ScriptType, HvNAME(SvSTASH(SvRV(inScalar)))) == > 0) > ^ > make[1]: Leaving directory '/<<BUILDDIR>>/mrs-6.0.5+dfsg' > dh_auto_build: make -j30 returned exit code 2 -- Martin Michlmayr Linux for HPE Helion, Hewlett Packard Enterprise
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--- Begin Message ---Source: mrs Source-Version: 6.0.5+dfsg-2 We believe that the bug you reported is fixed in the latest version of mrs, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 816...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated mrs package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Fri, 12 Aug 2016 13:01:30 +0200 Source: mrs Binary: mrs Architecture: source amd64 Version: 6.0.5+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: mrs - Information Retrieval System for Biomedical databanks Closes: 816569 Changes: mrs (6.0.5+dfsg-2) unstable; urgency=medium . [Andreas Tille] * cme fix dpkg-control * hardening=+all * d/watch: xz compressed repackaged tarball . [Gert Wollny] * d/p/gcc-6.patch fix compilation with gcc-6 Closes: #816569 Checksums-Sha1: 6314f1fb6746c944a8791034298612ed85d18f3c 2309 mrs_6.0.5+dfsg-2.dsc d4173d1906b8a6aa7353aa88ee9c907bb6f1f384 5540 mrs_6.0.5+dfsg-2.debian.tar.xz c945ff48d636fe8d17aab1499b5b910167578be6 101020 mrs-dbgsym_6.0.5+dfsg-2_amd64.deb 8a77376b73d41a7cbf676ab2c28df341a569ed1d 968702 mrs_6.0.5+dfsg-2_amd64.deb Checksums-Sha256: 9aa0a15414e52c777b474044ebfad6b7da63b2e58ed009b1cb4bd8d696ea30f1 2309 mrs_6.0.5+dfsg-2.dsc 3671f267144457525ce8ee520cfac6d63c8394449d7a34aa931555941baa401c 5540 mrs_6.0.5+dfsg-2.debian.tar.xz e33c920c45dcfbae5fea73dbbf2ce6dca4434b307ff17331950deffb4be80933 101020 mrs-dbgsym_6.0.5+dfsg-2_amd64.deb 74c9d685a2dd35d693b5816e1652a6cd38a8b27109cddd769a4506fce850eb83 968702 mrs_6.0.5+dfsg-2_amd64.deb Files: 769dd68dfa75c339948859d27428cf7f 2309 science optional mrs_6.0.5+dfsg-2.dsc f8419c38e52e031ee076d8fda103a4df 5540 science optional mrs_6.0.5+dfsg-2.debian.tar.xz 09b9f4d3f848a9adf9f979533f856ae8 101020 debug extra mrs-dbgsym_6.0.5+dfsg-2_amd64.deb 559a958149e37ce198dfb16a1bc69c3d 968702 science optional mrs_6.0.5+dfsg-2_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJXrbHuAAoJEFeKBJTRxkbRXlEP/ifjmSnUzMgzIAZImJPCdlET R518VhzyC528bE5mZVUN6hAietre2Twja5ZBhfcV4v8RkQ4caHUvr4wCpGIFUyyu kXo7R6Mk+NPWvvHd6dpdxrNwUP/CYb9EYUX81P2cvAqiLyVHGxQ5XE9qVkPv0+Ra ioPMLNs/OiJNrvl/fHLb8NerQ+/2Z36dSxSrTuuNjkgsx+a86eih7HGUsSsJ3BFZ /h5INE9YC2InZunX2SN7tHJgYMgJKdgAZWTZDYgQNT5yKJvAqef39XBXXa8Sy8sS CheIheINEM+UgLK9PRXcuGdeigPtlyTt4taNxB9MGr1cHp90KdUXdsiO/Hm5INSY abbXvstxAR4xJqaiBvd/BDlmlScLCWL9cwpot2xbCr5zpgjhoFGn7S1LZQbGUmUf c72HmPClvnnWL74bjWhsEmUV5MbCAArzJ09o4AYgkEY3nSJRLQa31Akwz3MWMYBc /d/8nr2vdpXQzQapm8UNEkwQJ718gn1oY9jgSkDVaccRNfnaJxoA9WUeZSiqyhbx MNJGkdGOQcGVaWe222ytyOz729X5dxIrO0msRFWGLgYl3B8Ki+gVMe+2GsYBBPzT rVfoScDLLTI3tBRxh7RJTDXfx/0xSBBsNmxBJamf/1j5xeEIJvWKH0kX1z0nBsAS SgmpT1OybnCwEBUakQ4T =RFyd -----END PGP SIGNATURE-----
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