Your message dated Fri, 5 Aug 2016 10:24:00 +0200
with message-id <0bc140f9-455d-811b-f076-d68ed17b7...@debian.org>
and subject line Re: avogadro: FTBFS in experimental: undefined reference to
`OpenBabel::OBMol::OBMol(OpenBabel::OBMol const&)'
has caused the Debian Bug report #803657,
regarding avogadro: FTBFS in experimental: undefined reference to
`OpenBabel::OBMol::OBMol(OpenBabel::OBMol const&)'
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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immediately.)
--
803657: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=803657
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: avogadro
Version: 1.1.1-1~exp3
Severity: serious
Justification: fails to build from source (but built successfully in the past)
avogadro compiles fine in experimental, but fails to link:
[100%] Linking CXX shared module ../../../lib/Avogadro.so
cd /tmp/buildd/avogadro-1.1.1/obj-x86_64-linux-gnu/libavogadro/src/python &&
/usr/bin/cmake -E cmake_link_script CMakeFiles/python-module.dir/link.txt
--verbose=1
/usr/bin/c++ -fPIC -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -fvisibility=hidden
-fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags
-Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC
-Wl,-z,relro -Wl,-z,defs -Wl,--as-needed -shared -Wl,-soname,Avogadro.so -o
../../../lib/Avogadro.so CMakeFiles/python-module.dir/eigen.cpp.o
CMakeFiles/python-module.dir/camera.cpp.o
CMakeFiles/python-module.dir/residue.cpp.o
CMakeFiles/python-module.dir/primitivelist.cpp.o
CMakeFiles/python-module.dir/mesh.cpp.o
CMakeFiles/python-module.dir/periodictableview.cpp.o
CMakeFiles/python-module.dir/molecule.cpp.o
CMakeFiles/python-module.dir/primitive.cpp.o
CMakeFiles/python-module.dir/fragment.cpp.o
CMakeFiles/python-module.dir/engine.cpp.o
CMakeFiles/python-module.dir/atom.cpp.o
CMakeFiles/python-module.dir/painter.cpp.o
CMakeFiles/python-module.dir/qlist.cpp.o
CMakeFiles/python-module.dir/swig.cpp.o CMakeFiles/python-mo
dule.dir/toolgroup.cpp.o CMakeFiles/python-module.dir/qstring.cpp.o
CMakeFiles/python-module.dir/sip.cpp.o
CMakeFiles/python-module.dir/moleculefile.cpp.o
CMakeFiles/python-module.dir/std_vector.cpp.o
CMakeFiles/python-module.dir/moleculelist.cpp.o
CMakeFiles/python-module.dir/elementtranslator.cpp.o
CMakeFiles/python-module.dir/plugin.cpp.o
CMakeFiles/python-module.dir/meshgenerator.cpp.o
CMakeFiles/python-module.dir/color.cpp.o
CMakeFiles/python-module.dir/glwidget.cpp.o
CMakeFiles/python-module.dir/neighborlist.cpp.o
CMakeFiles/python-module.dir/cube.cpp.o
CMakeFiles/python-module.dir/painterdevice.cpp.o
CMakeFiles/python-module.dir/bond.cpp.o
CMakeFiles/python-module.dir/pluginmanager.cpp.o
CMakeFiles/python-module.dir/animation.cpp.o
CMakeFiles/python-module.dir/navigate.cpp.o
CMakeFiles/python-module.dir/extension.cpp.o
CMakeFiles/python-module.dir/main.cpp.o CMakeFiles/python-module.dir/tool.cpp.o
-lstdc++ ../../../lib/libavogadro.so.1.1.1 -lQtOpenGL -lQtGui -lQtCore -lpython
2.7 -lboost_python
-Wl,-rpath,/tmp/buildd/avogadro-1.1.1/obj-x86_64-linux-gnu/lib:
CMakeFiles/python-module.dir/swig.cpp.o: In function
`Molecule_OBMol(Avogadro::Molecule&)':
/tmp/buildd/avogadro-1.1.1/libavogadro/src/python/swig.cpp:554: undefined
reference to `OpenBabel::OBMol::OBMol(OpenBabel::OBMol const&)'
/tmp/buildd/avogadro-1.1.1/libavogadro/src/python/swig.cpp:554: undefined
reference to `OpenBabel::OBMol::~OBMol()'
/tmp/buildd/avogadro-1.1.1/libavogadro/src/python/swig.cpp:554: undefined
reference to `OpenBabel::OBMol::~OBMol()'
collect2: error: ld returned 1 exit status
libavogadro/src/python/CMakeFiles/python-module.dir/build.make:993: recipe for
target 'lib/Avogadro.so' failed
make[3]: *** [lib/Avogadro.so] Error 1
make[3]: Leaving directory '/tmp/buildd/avogadro-1.1.1/obj-x86_64-linux-gnu'
CMakeFiles/Makefile2:3089: recipe for target
'libavogadro/src/python/CMakeFiles/python-module.dir/all' failed
make[2]: *** [libavogadro/src/python/CMakeFiles/python-module.dir/all] Error 2
make[2]: Leaving directory '/tmp/buildd/avogadro-1.1.1/obj-x86_64-linux-gnu'
Makefile:152: recipe for target 'all' failed
make[1]: *** [all] Error 2
make[1]: Leaving directory '/tmp/buildd/avogadro-1.1.1/obj-x86_64-linux-gnu'
dh_auto_build: make -j16 returned exit code 2
debian/rules:20: recipe for target 'build' failed
Andreas
--- End Message ---
--- Begin Message ---
Version: 1.1.1-1~exp3.1
the 1.1.1-1~exp3.1 NMU successfully built.
--- End Message ---
