Your message dated Fri, 05 Aug 2016 04:38:19 +0000
with message-id <e1bvwtn-0003wd...@franck.debian.org>
and subject line Bug#816983: fixed in nipy 0.4.0+git26-gf8d3149-1
has caused the Debian Bug report #816983,
regarding nipy: FTBFS in testing
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
816983: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=816983
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:nipy
Version: 0.3.0+git262-gbb838d7-1
User: sanv...@debian.org
Usertags: binary-indep
Severity: important
Dear maintainer:
I tried to build this package with "dpkg-buildpackage -A"
(i.e. only architecture-independent packages), and it failed:
--------------------------------------------------------------------------------
[...]
debian/rules build-indep
dh --buildsystem=python_distutils --with=python2 build-indep
dh_testdir -i -O--buildsystem=python_distutils
dh_update_autotools_config -i -O--buildsystem=python_distutils
dh_auto_configure -i -O--buildsystem=python_distutils
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/nipy-0.3.0+git262-gbb838d7'
dh_auto_build
pyversions: missing X(S)-Python-Version in control file, fall back to
debian/pyversions
python-dbg setup.py build --force
Missing optional package "mayavi"; you may get run-time errors
lapack_opt_info:
[... snipped ...]
======================================================================
ERROR: nipy.algorithms.statistics.tests.test_empirical_pvalue.test_efdr
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File
"/<<BUILDDIR>>/nipy-0.3.0+git262-gbb838d7/debian/tmp/usr/lib/python2.7/dist-packages/nipy/algorithms/statistics/tests/test_empirical_pvalue.py",
line 30, in test_efdr
np.testing.assert_array_less(efdr.fdr(3.0), 0.2)
File
"/<<BUILDDIR>>/nipy-0.3.0+git262-gbb838d7/debian/tmp/usr/lib/python2.7/dist-packages/nipy/algorithms/statistics/empirical_pvalue.py",
line 308, in fdr
self.fdrcurve()
File
"/<<BUILDDIR>>/nipy-0.3.0+git262-gbb838d7/debian/tmp/usr/lib/python2.7/dist-packages/nipy/algorithms/statistics/empirical_pvalue.py",
line 232, in fdrcurve
self.learn()
File
"/<<BUILDDIR>>/nipy-0.3.0+git262-gbb838d7/debian/tmp/usr/lib/python2.7/dist-packages/nipy/algorithms/statistics/empirical_pvalue.py",
line 204, in learn
hist, ledge = np.histogram(x, bins=bins)
File "/usr/lib/python2.7/dist-packages/numpy/lib/function_base.py", line 249,
in histogram
n += np.bincount(indices, weights=tmp_w, minlength=bins).astype(ntype)
ValueError: operands could not be broadcast together with shapes (132,) (133,)
(132,)
======================================================================
FAIL:
nipy.algorithms.statistics.models.tests.test_olsR.test_results(11.593162207505021,
11.59314014427966, 6)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/usr/lib/python2.7/dist-packages/numpy/testing/utils.py", line 513, in
assert_almost_equal
raise AssertionError(_build_err_msg())
AssertionError:
Arrays are not almost equal to 6 decimals
ACTUAL: 11.593162207505021
DESIRED: 11.59314014427966
----------------------------------------------------------------------
Ran 4535 tests in 157.347s
FAILED (SKIP=6, errors=1, failures=1)
debian/rules:57: recipe for target 'test' failed
make[1]: *** [test] Error 1
make[1]: Leaving directory '/<<BUILDDIR>>/nipy-0.3.0+git262-gbb838d7'
debian/rules:19: recipe for target 'binary-indep' failed
make: *** [binary-indep] Error 2
dpkg-buildpackage: error: fakeroot debian/rules binary-indep gave error exit
status 2
--------------------------------------------------------------------------------
Sorry not to have a fix, as I am reporting many bugs similar to
this one. The common hints are:
* If the only architecture-independent packages are dummy transitional
ones and they were released with jessie, the easy fix is to drop them
now.
* When using "dh", it is allowed to use (independently)
optional targets override_dh_foo-arch and override_dh_foo-indep
(for several values of "foo").
Once that both "dpkg-buildpackage -A" and "dpkg-buildpackage -B" work
properly, the package would be suitable to be uploaded in source-only
form if you wish.
Thanks.
--- End Message ---
--- Begin Message ---
Source: nipy
Source-Version: 0.4.0+git26-gf8d3149-1
We believe that the bug you reported is fixed in the latest version of
nipy, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 816...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Yaroslav Halchenko <deb...@onerussian.com> (supplier of updated nipy package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 03 Aug 2016 22:54:08 -0400
Source: nipy
Binary: python-nipy python-nipy-lib python-nipy-lib-dbg python-nipy-doc
Architecture: source all amd64
Version: 0.4.0+git26-gf8d3149-1
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team <t...@neuro.debian.net>
Changed-By: Yaroslav Halchenko <deb...@onerussian.com>
Description:
python-nipy - Analysis of structural and functional neuroimaging data
python-nipy-doc - documentation and examples for NiPy
python-nipy-lib - Analysis of structural and functional neuroimaging data
python-nipy-lib-dbg - Analysis of structural and functional neuroimaging data
Closes: 816983
Changes:
nipy (0.4.0+git26-gf8d3149-1) unstable; urgency=medium
.
* New upstream snapshot from 0.4.0-26-gf8d3149
- various compatibility fixes (Closes: #816983)
* debian/rules
- fixed up PATH/invocation of scripts so that manpages generate and
tests pass
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--- End Message ---
