Your message dated Tue, 05 Jul 2016 06:33:59 +0000
with message-id <e1bkjvj-0003ye...@franck.debian.org>
and subject line Bug#811992: fixed in librostlab-blast 1.0.1-6
has caused the Debian Bug report #811992,
regarding librostlab-blast: FTBFS with GCC 6: misc errors
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
811992: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=811992
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: librostlab-blast
Version: 1.0.1-5
Severity: important
User: debian-...@lists.debian.org
Usertags: ftbfs-gcc-6 gcc-6-overloaded-ambiguous
This package fails to build with GCC 6. GCC 6 has not been released
yet, but it's expected that GCC 6 will become the default compiler for
stretch.
Note that only the first error is reported; there might be more. You
can find a snapshot of GCC 6 in experimental. To build with GCC 6,
you can set CC=gcc-6 CXX=g++-6 explicitly.
You may be able to find out more about this issue at
https://gcc.gnu.org/gcc-6/changes.html
> sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on dl580gen9-02.hlinux
...
> libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time
> -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat
> -Werror=format-security -c blast-parser-driver.cpp -fPIC -DPIC -o
> .libs/librostlab_blast_la-blast-parser-driver.o
> In file included from blast-parser-driver.cpp:19:0:
> rostlab/blast-parser-driver.h:43:26: error: 'enum
> rostlab::blast::parser::token::yytokentype' is not a class or a namespace
> void* yyscanner )
> ^
>
> rostlab/blast-parser-driver.h:61:12: note: in expansion of macro
> 'YY_DECL_FRIEND'
> friend YY_DECL_FRIEND;
> ^~~~~~~~~~~~~~
>
> rostlab/blast-parser-driver.h:43:26: error: ISO C++ forbids declaration of
> 'yylex' with no type [-fpermissive]
> void* yyscanner )
> ^
>
> rostlab/blast-parser-driver.h:61:12: note: in expansion of macro
> 'YY_DECL_FRIEND'
> friend YY_DECL_FRIEND;
> ^~~~~~~~~~~~~~
>
> /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I..
> -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong
> -Wformat -Werror=format-security -c -o
> librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.lo `test -f
> 'librostlab_blast_la-blast-parser-scanner.cpp' || echo
> './'`librostlab_blast_la-blast-parser-scanner.cpp
> libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time
> -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat
> -Werror=format-security -c librostlab_blast_la-blast-parser-scanner.cpp
> -fPIC -DPIC -o
> .libs/librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.o
> In file included from blast-parser-parser.ypp:54:0:
> rostlab/blast-parser-driver.h:43:26: error: 'enum
> rostlab::blast::parser::token::yytokentype' is not a class or a namespace
> void* yyscanner )
> ^
>
> rostlab/blast-parser-driver.h:61:12: note: in expansion of macro
> 'YY_DECL_FRIEND'
> friend YY_DECL_FRIEND;
> ^~~~~~~~~~~~~~
>
> rostlab/blast-parser-driver.h:43:26: error: ISO C++ forbids declaration of
> 'yylex' with no type [-fpermissive]
> void* yyscanner )
> ^
>
> rostlab/blast-parser-driver.h:61:12: note: in expansion of macro
> 'YY_DECL_FRIEND'
> friend YY_DECL_FRIEND;
> ^~~~~~~~~~~~~~
>
> blast-parser-parser.cpp: In member function 'virtual int
> rostlab::blast::parser::parse()':
> blast-parser-parser.cpp:630:89: error: call of overloaded
> 'yylex(rostlab::blast::parser::semantic_type*,
> rostlab::blast::parser::location_type*, rostlab::blast::parser_driver&,
> void*&)' is ambiguous
> yyla.type = yytranslate_ (yylex (&yyla.value, &yyla.location,
> drv, yyscanner));
>
> ^
--
Martin Michlmayr
Linux for HPE Helion, Hewlett Packard Enterprise
--- End Message ---
--- Begin Message ---
Source: librostlab-blast
Source-Version: 1.0.1-6
We believe that the bug you reported is fixed in the latest version of
librostlab-blast, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 811...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Tatiana Malygina <merlett...@gmail.com> (supplier of updated librostlab-blast
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sun, 26 Jun 2016 12:01:49 +0300
Source: librostlab-blast
Binary: librostlab-blast0v5 librostlab-blast0-dev librostlab-blast-doc
librostlab-blast0v5-dbg
Architecture: source all amd64
Version: 1.0.1-6
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Tatiana Malygina <merlett...@gmail.com>
Description:
librostlab-blast-doc - very fast C++ library for parsing the output of NCBI
BLAST progra
librostlab-blast0-dev - very fast C++ library for parsing the output of NCBI
BLAST progra
librostlab-blast0v5 - very fast C++ library for parsing the output of NCBI
BLAST progra
librostlab-blast0v5-dbg - debugging symbols for librostlab-blast
Closes: 811992
Changes:
librostlab-blast (1.0.1-6) unstable; urgency=medium
.
* Team upload.
.
[Tatiana Malygina]
* Add testsuite
* Add hardening, run cme fix dpkg-control
.
[Gert Wollny]
* d/rules: Force -std=c++03, Closes: #811992
Checksums-Sha1:
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librostlab-blast0-dev_1.0.1-6_amd64.deb
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Files:
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librostlab-blast_1.0.1-6.dsc
2cbf18a08b7737117cef2ef028123f58 5092 science optional
librostlab-blast_1.0.1-6.debian.tar.xz
1b415b3938439515b6ad7bf41471a641 738768 doc optional
librostlab-blast-doc_1.0.1-6_all.deb
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librostlab-blast0-dev_1.0.1-6_amd64.deb
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librostlab-blast0v5-dbg_1.0.1-6_amd64.deb
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