Your message dated Sat, 02 Jul 2016 05:33:46 +0000
with message-id <e1bjdyo-0007ph...@franck.debian.org>
and subject line Bug#811876: fixed in disulfinder 1.2.11-6
has caused the Debian Bug report #811876,
regarding disulfinder: FTBFS with GCC 6: no matching function for call to
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
811876: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=811876
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: disulfinder
Version: 1.2.11-5
Severity: important
User: debian-...@lists.debian.org
Usertags: ftbfs-gcc-6 gcc-6-no-match
This package fails to build with GCC 6. GCC 6 has not been released
yet, but it's expected that GCC 6 will become the default compiler for
stretch.
Note that only the first error is reported; there might be more. You
can find a snapshot of GCC 6 in experimental. To build with GCC 6,
you can set CC=gcc-6 CXX=g++-6 explicitly.
You may be able to find out more about this issue at
https://gcc.gnu.org/gcc-6/changes.html
> sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on dl580gen9-02.hlinux
...
> g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat
> -Werror=format-security -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3
> -Wall -Wno-deprecated -IBRNN/RNNs -c Input/Protein.cpp -o Input/Protein.o
> In file included from Input/Protein.cpp:11:0:
> Input/../Common/Util.h: In function 'void Util::readfile(std::vector<T>&,
> std::__cxx11::string)':
> Input/../Common/Util.h:120:80: error: no matching function for call to
> 'Exception::Assert(std::ifstream&, const char [34], const char*)'
> Exception::Assert(ifs,"Cannot open file <%s> for reading",
> filename.c_str());
>
> ^
>
> In file included from Input/../Common/Util.h:11:0,
> from Input/Protein.cpp:11:
> Input/../Common/../Common/Exception.h:30:15: note: candidate: static void
> Exception::Assert(bool)
> static void Assert(bool condition) { if(!condition) throw new Exception();
> }
> ^~~~~~
>
> Input/../Common/../Common/Exception.h:30:15: note: candidate expects 1
> argument, 3 provided
> Input/../Common/../Common/Exception.h:31:15: note: candidate: static void
> Exception::Assert(bool, const char*, ...)
> static void Assert(bool condition, const char *const format,...);
> ^~~~~~
>
> Input/../Common/../Common/Exception.h:31:15: note: no known conversion for
> argument 1 from 'std::ifstream {aka std::basic_ifstream<char>}' to 'bool'
> Input/../Common/../Common/Exception.h:32:15: note: candidate: static void
> Exception::Assert(bool, const string&)
> static void Assert(bool condition, const string &mex) { if(!condition)
> throw new Exception(mex); }
> ^~~~~~
>
> Input/../Common/../Common/Exception.h:32:15: note: candidate expects 2
> arguments, 3 provided
> In file included from Input/Protein.cpp:11:0:
> Input/../Common/Util.h: In function 'std::ostream&
> Util::writeOptionArray(std::ostream&, const char*, ValueType*, int)':
> Input/../Common/Util.h:169:72: error: no matching function for call to
> 'Exception::Assert(std::basic_ostream<char>&, const char [25], const char*&)'
> Exception::Assert(os << tag << " ", "Error while writing <%s>", tag);
> ^
>
> In file included from Input/../Common/Util.h:11:0,
> from Input/Protein.cpp:11:
> Input/../Common/../Common/Exception.h:30:15: note: candidate: static void
> Exception::Assert(bool)
> static void Assert(bool condition) { if(!condition) throw new Exception();
> }
> ^~~~~~
>
> Input/../Common/../Common/Exception.h:30:15: note: candidate expects 1
> argument, 3 provided
> Input/../Common/../Common/Exception.h:31:15: note: candidate: static void
> Exception::Assert(bool, const char*, ...)
> static void Assert(bool condition, const char *const format,...);
> ^~~~~~
>
> Input/../Common/../Common/Exception.h:31:15: note: no known conversion for
> argument 1 from 'std::basic_ostream<char>' to 'bool'
> Input/../Common/../Common/Exception.h:32:15: note: candidate: static void
> Exception::Assert(bool, const string&)
> static void Assert(bool condition, const string &mex) { if(!condition)
> throw new Exception(mex); }
> ^~~~~~
>
> Input/../Common/../Common/Exception.h:32:15: note: candidate expects 2
> arguments, 3 provided
> In file included from Input/Protein.cpp:11:0:
> Input/../Common/Util.h:172:66: error: no matching function for call to
> 'Exception::Assert(std::basic_ostream<char>::__ostream_type&, const char
> [25], const char*&)'
> Exception::Assert(os << endl, "Error while writing <%s>", tag);
> ^
>
> In file included from Input/../Common/Util.h:11:0,
> from Input/Protein.cpp:11:
> Input/../Common/../Common/Exception.h:30:15: note: candidate: static void
> Exception::Assert(bool)
> static void Assert(bool condition) { if(!condition) throw new Exception();
> }
> ^~~~~~
>
> Input/../Common/../Common/Exception.h:30:15: note: candidate expects 1
> argument, 3 provided
> Input/../Common/../Common/Exception.h:31:15: note: candidate: static void
> Exception::Assert(bool, const char*, ...)
> static void Assert(bool condition, const char *const format,...);
> ^~~~~~
>
> Input/../Common/../Common/Exception.h:31:15: note: no known conversion for
> argument 1 from 'std::basic_ostream<char>::__ostream_type {aka
> std::basic_ostream<char>}' to 'bool'
> Input/../Common/../Common/Exception.h:32:15: note: candidate: static void
> Exception::Assert(bool, const string&)
> static void Assert(bool condition, const string &mex) { if(!condition)
> throw new Exception(mex); }
> ^~~~~~
>
> Input/../Common/../Common/Exception.h:32:15: note: candidate expects 2
> arguments, 3 provided
> Input/Protein.cpp: In member function 'void Protein::ReadDSSP(std::istream&,
> char, bool)':
> Input/Protein.cpp:643:76: error: no matching function for call to
> 'Exception::Assert(std::istream&, const char [48])'
> Exception::Assert(fp,"unexpected EOF while looking for protein\'s data");
> ^
>
> In file included from Input/../Common/Util.h:11:0,
> from Input/Protein.cpp:11:
> Input/../Common/../Common/Exception.h:30:15: note: candidate: static void
> Exception::Assert(bool)
> static void Assert(bool condition) { if(!condition) throw new Exception();
> }
> ^~~~~~
>
> Input/../Common/../Common/Exception.h:30:15: note: candidate expects 1
> argument, 2 provided
> Input/../Common/../Common/Exception.h:31:15: note: candidate: static void
> Exception::Assert(bool, const char*, ...)
> static void Assert(bool condition, const char *const format,...);
> ^~~~~~
>
> Input/../Common/../Common/Exception.h:31:15: note: no known conversion for
> argument 1 from 'std::istream {aka std::basic_istream<char>}' to 'bool'
> Input/../Common/../Common/Exception.h:32:15: note: candidate: static void
> Exception::Assert(bool, const string&)
> static void Assert(bool condition, const string &mex) { if(!condition)
> throw new Exception(mex); }
> ^~~~~~
>
> Input/../Common/../Common/Exception.h:32:15: note: no known conversion for
> argument 1 from 'std::istream {aka std::basic_istream<char>}' to 'bool'
> Makefile:48: recipe for target 'Input/Protein.o' failed
--
Martin Michlmayr
Linux for HPE Helion, Hewlett Packard Enterprise
--- End Message ---
--- Begin Message ---
Source: disulfinder
Source-Version: 1.2.11-6
We believe that the bug you reported is fixed in the latest version of
disulfinder, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 811...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Tatiana Malygina <merlett...@gmail.com> (supplier of updated disulfinder
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sun, 26 Jun 2016 05:46:50 +0300
Source: disulfinder
Binary: disulfinder disulfinder-data
Architecture: source all amd64
Version: 1.2.11-6
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Tatiana Malygina <merlett...@gmail.com>
Description:
disulfinder - cysteines disulfide bonding state and connectivity predictor
disulfinder-data - data files for predictor of disulfide bonds in proteins
Closes: 811876
Changes:
disulfinder (1.2.11-6) unstable; urgency=medium
.
* Team upload.
.
[Tatiana Malygina]
* fix in install override in debian/rules
* add harderning
* add simple testsuite
* cme fix dpkg-control
* add README.test
.
[Gert Wollny]
* d/p/gcc-6: Add patch to fix compilation with gcc-6, Closes: #811876
* d/rules: enable parallel builds
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disulfinder_1.2.11-6.debian.tar.xz
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disulfinder-data_1.2.11-6_all.deb
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disulfinder-dbgsym_1.2.11-6_amd64.deb
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Files:
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disulfinder-data_1.2.11-6_all.deb
0f5e6e12a67b821b72568766c8c55bba 2668324 debug extra
disulfinder-dbgsym_1.2.11-6_amd64.deb
1e656f40725e9e28843c52dfc1334e4d 260686 science optional
disulfinder_1.2.11-6_amd64.deb
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