Your message dated Wed, 29 Jun 2016 19:50:42 +0000
with message-id <e1bilvs-0007ez...@franck.debian.org>
and subject line Bug#811641: fixed in relion 1.4+dfsg-2
has caused the Debian Bug report #811641,
regarding FTBFS with GCC 6: multiple errors
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
811641: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=811641
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: relion
Version: 1.4+dfsg-1
Severity: important
User: debian-...@lists.debian.org
Usertags: ftbfs-gcc-6 gcc-6-cannot-convert
This package fails to build with GCC 6. GCC 6 has not been released
yet, but it's expected that GCC 6 will become the default compiler for
stretch.
Note that only the first error is reported; there might be more. You
can find a snapshot of GCC 6 in experimental. To build with GCC 6,
you can set CC=gcc-6 CXX=g++-6 explicitly.
> sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on dl580gen9-02.hlinux
...
> g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -c -o
> src/apps/postprocess.o src/apps/postprocess.cpp
> g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -c -o
> src/apps/autopick.o src/apps/autopick.cpp
> src/Healpix_2.15a/cxxutils.cc: In function 'bool file_present(const string&)':
> src/Healpix_2.15a/cxxutils.cc:58:10: error: cannot convert 'std::ifstream
> {aka std::basic_ifstream<char>}' to 'bool' in return
> return dummy;
> ^~~~~
>
> src/Healpix_2.15a/cxxutils.cc: In function 'void parse_file(const string&,
> std::map<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char>
> >&)':
> src/Healpix_2.15a/cxxutils.cc:264:63: error: no matching function for call to
> 'planck_assert(std::ifstream&, std::__cxx11::basic_string<char>)'
> planck_assert (inp,"Could not open parameter file "+filename);
> ^
--
Martin Michlmayr
Linux for HPE Helion, Hewlett Packard Enterprise
--- End Message ---
--- Begin Message ---
Source: relion
Source-Version: 1.4+dfsg-2
We believe that the bug you reported is fixed in the latest version of
relion, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 811...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Gert Wollny <gw.foss...@gmail.com> (supplier of updated relion package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 29 Jun 2016 13:32:34 +0000
Source: relion
Binary: relion-bin relion-bin+mpi relion-bin+gui relion-bin+mpi+gui
librelion-dev-common librelion-dev librelion+mpi-dev librelion+gui-dev
librelion+mpi+gui-dev librelion-1.4-1 librelion+mpi-1.4-1 librelion+gui-1.4-1
librelion+mpi+gui-1.4-1
Architecture: source amd64 all
Version: 1.4+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Gert Wollny <gw.foss...@gmail.com>
Description:
librelion+gui-1.4-1 - RELION dynnamic library (3D reconstructions in
cryo-electron micr
librelion+gui-dev - C++ API for RELION (3D reconstructions in cryo-electron
microscop
librelion+mpi+gui-1.4-1 - RELION dynnamic library (3D reconstructions in
cryo-electron micr
librelion+mpi+gui-dev - C++ API for RELION (3D reconstructions in
cryo-electron microscop
librelion+mpi-1.4-1 - RELION dynnamic library (3D reconstructions in
cryo-electron micr
librelion+mpi-dev - C++ API for RELION (3D reconstructions in cryo-electron
microscop
librelion-1.4-1 - RELION dynnamic library (3D reconstructions in cryo-electron
micr
librelion-dev - C++ API for RELION (3D reconstructions in cryo-electron
microscop
librelion-dev-common - C++ API for RELION (3D reconstructions in cryo-electron
microscop
relion-bin - toolkit for 3D reconstructions in cryo-electron microscopy
relion-bin+gui - parallel toolkit for 3D reconstructions in cryo-electron
microsco
relion-bin+mpi - parallel toolkit for 3D reconstructions in cryo-electron
microsco
relion-bin+mpi+gui - parallel toolkit for 3D reconstructions in cryo-electron
microsco
Closes: 811641
Changes:
relion (1.4+dfsg-2) unstable; urgency=medium
.
[ Gert Wollny ]
* Team upload.
* d/p/0005: Correct compilation with gcc-6, Closes: #811641
* d/p/0006: Correctly copy only 4 byte, corresponding to the
target array size
* d/control: Update standards version to 3.9.8
.
[ Andreas Tille ]
* hardening=+bindnow
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