Your message dated Sat, 25 Jun 2016 12:24:13 +0000 with message-id <e1bgmdb-0003ge...@franck.debian.org> and subject line Bug#828115: fixed in lme4 1.1-12-2 has caused the Debian Bug report #828115, regarding lme4: FTBFS: dh_clean: Please specify the compatibility level in debian/compat to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 828115: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=828115 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: lme4 Version: 1.1-12-1 Severity: serious Justification: fails to build from source User: reproducible-bui...@lists.alioth.debian.org Usertags: ftbfs X-Debbugs-Cc: reproducible-bui...@lists.alioth.debian.org Dear Maintainer, lme4 fails to build from source in unstable/amd64: [..] Preparing to unpack .../libjbig0_2.1-3.1_amd64.deb ... Unpacking libjbig0:amd64 (2.1-3.1) ... Selecting previously unselected package libtiff5:amd64. Preparing to unpack .../libtiff5_4.0.6-1_amd64.deb ... Unpacking libtiff5:amd64 (4.0.6-1) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../libxft2_2.3.2-1_amd64.deb ... Unpacking libxft2:amd64 (2.3.2-1) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../libxss1_1%3a1.2.2-1_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.2-1) ... Selecting previously unselected package libtk8.6:amd64. Preparing to unpack .../libtk8.6_8.6.5-1_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.5-1) ... Selecting previously unselected package libxt6:amd64. Preparing to unpack .../libxt6_1%3a1.1.5-1_amd64.deb ... Unpacking libxt6:amd64 (1:1.1.5-1) ... Selecting previously unselected package openssl. Preparing to unpack .../openssl_1.0.2h-1_amd64.deb ... Unpacking openssl (1.0.2h-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../ca-certificates_20160104_all.deb ... Unpacking ca-certificates (20160104) ... Selecting previously unselected package r-base-core. Preparing to unpack .../r-base-core_3.3.1-1_amd64.deb ... Unpacking r-base-core (3.3.1-1) ... Selecting previously unselected package libgfortran-5-dev:amd64. Preparing to unpack .../libgfortran-5-dev_5.4.0-4_amd64.deb ... Unpacking libgfortran-5-dev:amd64 (5.4.0-4) ... Selecting previously unselected package gfortran-5. Preparing to unpack .../gfortran-5_5.4.0-4_amd64.deb ... Unpacking gfortran-5 (5.4.0-4) ... Selecting previously unselected package gfortran. Preparing to unpack .../gfortran_4%3a5.3.1-3_amd64.deb ... Unpacking gfortran (4:5.3.1-3) ... Selecting previously unselected package libblas-dev. Preparing to unpack .../libblas-dev_3.6.0-2_amd64.deb ... Unpacking libblas-dev (3.6.0-2) ... Selecting previously unselected package liblapack-dev. Preparing to unpack .../liblapack-dev_3.6.0-2_amd64.deb ... Unpacking liblapack-dev (3.6.0-2) ... Selecting previously unselected package libtinfo-dev:amd64. Preparing to unpack .../libtinfo-dev_6.0+20160319-2+b1_amd64.deb ... Unpacking libtinfo-dev:amd64 (6.0+20160319-2+b1) ... Selecting previously unselected package libncurses5-dev:amd64. Preparing to unpack .../libncurses5-dev_6.0+20160319-2+b1_amd64.deb ... Unpacking libncurses5-dev:amd64 (6.0+20160319-2+b1) ... Selecting previously unselected package libreadline6-dev:amd64. Preparing to unpack .../libreadline6-dev_6.3-8+b4_amd64.deb ... Unpacking libreadline6-dev:amd64 (6.3-8+b4) ... Selecting previously unselected package libreadline-dev:amd64. Preparing to unpack .../libreadline-dev_6.3-8+b4_amd64.deb ... Unpacking libreadline-dev:amd64 (6.3-8+b4) ... Selecting previously unselected package libjpeg62-turbo-dev:amd64. Preparing to unpack .../libjpeg62-turbo-dev_1%3a1.5.0-1_amd64.deb ... Unpacking libjpeg62-turbo-dev:amd64 (1:1.5.0-1) ... Selecting previously unselected package libjpeg-dev. Preparing to unpack .../libjpeg-dev_1%3a1.5.0-1_all.deb ... Unpacking libjpeg-dev (1:1.5.0-1) ... Selecting previously unselected package libpcre16-3:amd64. Preparing to unpack .../libpcre16-3_2%3a8.38-3.1_amd64.deb ... Unpacking libpcre16-3:amd64 (2:8.38-3.1) ... Selecting previously unselected package libpcre32-3:amd64. Preparing to unpack .../libpcre32-3_2%3a8.38-3.1_amd64.deb ... Unpacking libpcre32-3:amd64 (2:8.38-3.1) ... Selecting previously unselected package libpcrecpp0v5:amd64. Preparing to unpack .../libpcrecpp0v5_2%3a8.38-3.1_amd64.deb ... Unpacking libpcrecpp0v5:amd64 (2:8.38-3.1) ... Selecting previously unselected package libpcre3-dev:amd64. Preparing to unpack .../libpcre3-dev_2%3a8.38-3.1_amd64.deb ... Unpacking libpcre3-dev:amd64 (2:8.38-3.1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.8.dfsg-2+b1) ... Selecting previously unselected package libpng-dev:amd64. Preparing to unpack .../libpng-dev_1.6.23-1_amd64.deb ... Unpacking libpng-dev:amd64 (1.6.23-1) ... Selecting previously unselected package libbz2-dev:amd64. Preparing to unpack .../libbz2-dev_1.0.6-8_amd64.deb ... Unpacking libbz2-dev:amd64 (1.0.6-8) ... Selecting previously unselected package liblzma-dev:amd64. Preparing to unpack .../liblzma-dev_5.1.1alpha+20120614-2.1_amd64.deb ... Unpacking liblzma-dev:amd64 (5.1.1alpha+20120614-2.1) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../icu-devtools_55.1-7_amd64.deb ... Unpacking icu-devtools (55.1-7) ... Selecting previously unselected package libicu-dev:amd64. Preparing to unpack .../libicu-dev_55.1-7_amd64.deb ... Unpacking libicu-dev:amd64 (55.1-7) ... Selecting previously unselected package r-base-dev. Preparing to unpack .../r-base-dev_3.3.1-1_all.deb ... Unpacking r-base-dev (3.3.1-1) ... Selecting previously unselected package r-cran-lattice. Preparing to unpack .../r-cran-lattice_0.20-33-1_amd64.deb ... Unpacking r-cran-lattice (0.20-33-1) ... Selecting previously unselected package r-cran-matrix. Preparing to unpack .../r-cran-matrix_1.2-6-1_amd64.deb ... Unpacking r-cran-matrix (1.2-6-1) ... Selecting previously unselected package r-cran-nlme. Preparing to unpack .../r-cran-nlme_3.1.128-2_amd64.deb ... Unpacking r-cran-nlme (3.1.128-2) ... Selecting previously unselected package r-cran-mass. Preparing to unpack .../r-cran-mass_7.3-45-1_amd64.deb ... Unpacking r-cran-mass (7.3-45-1) ... Selecting previously unselected package r-cran-littler. Preparing to unpack .../r-cran-littler_0.3.0-3_amd64.deb ... Unpacking r-cran-littler (0.3.0-3) ... Selecting previously unselected package littler. Preparing to unpack .../littler_0.3.0-3_all.deb ... Unpacking littler (0.3.0-3) ... Selecting previously unselected package r-cran-pkgkitten. Preparing to unpack .../r-cran-pkgkitten_0.1.3-1_all.deb ... Unpacking r-cran-pkgkitten (0.1.3-1) ... Selecting previously unselected package r-cran-rcpp. Preparing to unpack .../r-cran-rcpp_0.12.5-1_amd64.deb ... Unpacking r-cran-rcpp (0.12.5-1) ... Selecting previously unselected package r-cran-rcppeigen. Preparing to unpack .../r-cran-rcppeigen_0.3.2.8.1-1_amd64.deb ... Unpacking r-cran-rcppeigen (0.3.2.8.1-1) ... Selecting previously unselected package r-cran-minqa. Preparing to unpack .../r-cran-minqa_1.2.4-1_amd64.deb ... Unpacking r-cran-minqa (1.2.4-1) ... Selecting previously unselected package libnlopt0:amd64. Preparing to unpack .../libnlopt0_2.4.2+dfsg-2+b1_amd64.deb ... Unpacking libnlopt0:amd64 (2.4.2+dfsg-2+b1) ... Selecting previously unselected package r-cran-nloptr. Preparing to unpack .../r-cran-nloptr_1.0.4-1_amd64.deb ... Unpacking r-cran-nloptr (1.0.4-1) ... Processing triggers for man-db (2.7.5-1) ... Processing triggers for mime-support (3.60) ... Processing triggers for libc-bin (2.22-12) ... Processing triggers for systemd (230-3) ... Setting up cdbs (0.4.142) ... Setting up zip (3.0-11) ... Setting up unzip (6.0-20) ... Setting up ucf (3.0036) ... Setting up libpaper1:amd64 (1.1.24+nmu4) ... Creating config file /etc/papersize with new version Setting up libpaper-utils (1.1.24+nmu4) ... Setting up xdg-utils (1.1.1-1) ... Setting up libgfortran3:amd64 (6.1.1-7) ... Setting up libblas-common (3.6.0-2) ... Setting up libblas3 (3.6.0-2) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libpng16-16:amd64 (1.6.23-1) ... Setting up libfreetype6:amd64 (2.6.3-3+b1) ... Setting up fonts-dejavu-core (2.35-1) ... Setting up fontconfig-config (2.11.0-6.4) ... Setting up libfontconfig1:amd64 (2.11.0-6.4) ... Setting up libpixman-1-0:amd64 (0.33.6-1) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ... Setting up libxcb1:amd64 (1.11.1-1) ... Setting up libx11-data (2:1.6.3-1) ... Setting up libx11-6:amd64 (2:1.6.3-1) ... Setting up libxcb-render0:amd64 (1.11.1-1) ... Setting up libxcb-shm0:amd64 (1.11.1-1) ... Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up libxrender1:amd64 (1:0.9.9-2) ... Setting up libcairo2:amd64 (1.14.6-1+b1) ... Setting up libcurl3:amd64 (7.47.0-1) ... Setting up x11-common (1:7.7+15) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:amd64 (2:1.0.9-1+b1) ... Setting up libjpeg62-turbo:amd64 (1:1.5.0-1) ... Setting up liblapack3 (3.6.0-2) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up fontconfig (2.11.0-6.4) ... Regenerating fonts cache... done. Setting up libthai-data (0.1.24-2) ... Setting up libdatrie1:amd64 (0.2.10-2) ... Setting up libthai0:amd64 (0.1.24-2) ... Setting up libpango-1.0-0:amd64 (1.40.1-1) ... Setting up libgraphite2-3:amd64 (1.3.8-1) ... Setting up libharfbuzz0b:amd64 (1.2.6-2) ... Setting up libpangoft2-1.0-0:amd64 (1.40.1-1) ... Setting up libpangocairo-1.0-0:amd64 (1.40.1-1) ... Setting up libsm6:amd64 (2:1.2.2-1+b1) ... Setting up libtcl8.6:amd64 (8.6.5+dfsg-2) ... Setting up libjbig0:amd64 (2.1-3.1) ... Setting up libtiff5:amd64 (4.0.6-1) ... Setting up libxft2:amd64 (2.3.2-1) ... Setting up libxss1:amd64 (1:1.2.2-1) ... Setting up libtk8.6:amd64 (8.6.5-1) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up openssl (1.0.2h-1) ... Setting up ca-certificates (20160104) ... Setting up r-base-core (3.3.1-1) ... Creating config file /etc/R/Renviron with new version Setting up libgfortran-5-dev:amd64 (5.4.0-4) ... Setting up gfortran-5 (5.4.0-4) ... Setting up gfortran (4:5.3.1-3) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libblas-dev (3.6.0-2) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode Setting up liblapack-dev (3.6.0-2) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode Setting up libtinfo-dev:amd64 (6.0+20160319-2+b1) ... Setting up libncurses5-dev:amd64 (6.0+20160319-2+b1) ... Setting up libreadline6-dev:amd64 (6.3-8+b4) ... Setting up libreadline-dev:amd64 (6.3-8+b4) ... Setting up libjpeg62-turbo-dev:amd64 (1:1.5.0-1) ... Setting up libjpeg-dev (1:1.5.0-1) ... Setting up libpcre16-3:amd64 (2:8.38-3.1) ... Setting up libpcre32-3:amd64 (2:8.38-3.1) ... Setting up libpcrecpp0v5:amd64 (2:8.38-3.1) ... Setting up libpcre3-dev:amd64 (2:8.38-3.1) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2+b1) ... Setting up libpng-dev:amd64 (1.6.23-1) ... Setting up libbz2-dev:amd64 (1.0.6-8) ... Setting up liblzma-dev:amd64 (5.1.1alpha+20120614-2.1) ... Setting up icu-devtools (55.1-7) ... Setting up libicu-dev:amd64 (55.1-7) ... Setting up r-base-dev (3.3.1-1) ... Setting up r-cran-lattice (0.20-33-1) ... Setting up r-cran-matrix (1.2-6-1) ... Setting up r-cran-nlme (3.1.128-2) ... Setting up r-cran-mass (7.3-45-1) ... Setting up r-cran-littler (0.3.0-3) ... Setting up littler (0.3.0-3) ... Setting up r-cran-pkgkitten (0.1.3-1) ... Setting up r-cran-rcpp (0.12.5-1) ... Setting up r-cran-rcppeigen (0.3.2.8.1-1) ... Setting up r-cran-minqa (1.2.4-1) ... Setting up libnlopt0:amd64 (2.4.2+dfsg-2+b1) ... Setting up r-cran-nloptr (1.0.4-1) ... Setting up lme4-build-deps (1.1-12-1) ... Processing triggers for libc-bin (2.22-12) ... Processing triggers for systemd (230-3) ... Processing triggers for ca-certificates (20160104) ... Updating certificates in /etc/ssl/certs... 173 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. ************************************************************************************** ** Environment ** ************************************************************************************** PATH=/home/lamby/git/projects/dotfiles/dotfiles/..//bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin HOSTNAME=72152254431f TERM=xterm PAGER=more DISPLAY=:0 DOCKER_IMAGE=lamby-debian-sid DEB_BUILD_OPTIONS=parallel=9 PIP_DOWNLOAD_CACHE=/home/lamby/.cache/pip HOME=/home/lamby LOGNAME=lamby SHLVL=1 PWD=/home/lamby/temp/cdt.20160625082652.iOTreHWmkD.lme4/lme4-1.1-12 OLDPWD=/home/lamby/temp/cdt.20160625082652.iOTreHWmkD.lme4 GPG_TTY=/dev/console QUILT_PATCHES=debian/patches QUILT_NO_DIFF_INDEX=1 QUILT_REFRESH_ARGS=-p ab --no-timestamps --no-index DEBEMAIL=la...@debian.org DEBFULLNAME=Chris Lamb EDITOR=vim LESS=-cgiFx4M BLASTER=A220 I5 D1 H5 P330 T6 _=/usr/bin/env ************************************************************************************** ** Building lme4 1.1-12-1 on amd64 ** ************************************************************************************** dpkg-buildpackage -rfakeroot -D -us -uc -b dpkg-buildpackage: info: source package lme4 dpkg-buildpackage: info: source version 1.1-12-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Dirk Eddelbuettel <e...@debian.org> dpkg-source --before-build lme4-1.1-12 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean CDBS WARNING: simple-patchsys.mk is deprecated since 0.4.85 - please use source format 3.0 (quilt) instead test -x debian/rules /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory '/home/lamby/temp/cdt.20160625082652.iOTreHWmkD.lme4/lme4-1.1-12' CDBS WARNING: simple-patchsys.mk is deprecated since 0.4.85 - please use source format 3.0 (quilt) instead make[1]: 'reverse-config' is up to date. make[1]: Leaving directory '/home/lamby/temp/cdt.20160625082652.iOTreHWmkD.lme4/lme4-1.1-12' if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi patches: if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi if [ "reverse-patches" != "reverse-patches" ] ; then \ /usr/bin/make -f debian/rules update-config ; \ fi for dir in debian/patches ; do \ rm -f $dir/*.log ; \ done dh_clean dh_clean: Please specify the compatibility level in debian/compat /usr/share/cdbs/1/rules/debhelper.mk:217: recipe for target 'clean' failed make: *** [clean] Error 2 [..] The full build log is attached. Regards, -- ,''`. : :' : Chris Lamb `. `'` la...@debian.org / chris-lamb.co.uk `-
lme4.1.1-12-1.unstable.amd64.log.txt.gz
Description: Binary data
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--- Begin Message ---Source: lme4 Source-Version: 1.1-12-2 We believe that the bug you reported is fixed in the latest version of lme4, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 828...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Dirk Eddelbuettel <e...@debian.org> (supplier of updated lme4 package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Format: 1.8 Date: Sat, 25 Jun 2016 07:14:22 -0500 Source: lme4 Binary: r-cran-lme4 Architecture: source amd64 Version: 1.1-12-2 Distribution: unstable Urgency: medium Maintainer: Dirk Eddelbuettel <e...@debian.org> Changed-By: Dirk Eddelbuettel <e...@debian.org> Description: r-cran-lme4 - GNU R package for linear mixed effects model fitting Closes: 828115 Changes: lme4 (1.1-12-2) unstable; urgency=medium . * debian/compat: Created (Closes: #828115) . * debian/control: Set Build-Depends: to current R version * debian/control: Set Standards-Version: to current version Checksums-Sha1: 8d01bdebae7702472ced9f8fa9089d2532ec9d21 1779 lme4_1.1-12-2.dsc 59fe807e5a04a42126fc2b0a6597b3b80cd530f1 4753 lme4_1.1-12-2.diff.gz 6c4b1ab1990e3371bbd8bf039dd2ebec646e9729 3087092 r-cran-lme4-dbgsym_1.1-12-2_amd64.deb 0713cc264cd7d6ca9de49add47319022efedf684 4029610 r-cran-lme4_1.1-12-2_amd64.deb Checksums-Sha256: b1f0e40e1b27c2b93d46cc93e7b4537f045a9e48ebc7b4616e7a0c0cbd9c8e38 1779 lme4_1.1-12-2.dsc ec78557627e38d0382e0a2a33c42fdd12ab21bc09d181664c51a8f482cfcfdb6 4753 lme4_1.1-12-2.diff.gz a349708875f1789c1f54448527c8510f0613169b22c169db19fe96bc29bdab7d 3087092 r-cran-lme4-dbgsym_1.1-12-2_amd64.deb 282c57eba850594de2e38f34b3bb6bfc08689e5bcb800c3d62c8c275beeb68f9 4029610 r-cran-lme4_1.1-12-2_amd64.deb Files: d521de4b47c4d6b324adb9e9da48dbe9 1779 gnu-r optional lme4_1.1-12-2.dsc da1b724e64ecdc96d3afac692e06b472 4753 gnu-r optional lme4_1.1-12-2.diff.gz c7cae7cf4c781725b8f39cc405d7e7e9 3087092 debug extra r-cran-lme4-dbgsym_1.1-12-2_amd64.deb a41dcd853f42e91727654b7731ddb96c 4029610 gnu-r optional r-cran-lme4_1.1-12-2_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIVAwUBV252F6FIn+KrmaIaAQLl5A//TxWiUoAwny/cN7LDMm+qRYEdLu0AVXaQ n8ZoW0vYv8dad8I/An9hVzwvMTGHMaXKveDNRVnDsT8quXroTa6xmITTcXwa6paT iNEGylDC6GJnLzxhX76NqJv7V/njpj3xNsAmXUYZlCiI0PEkOEis6y5H+NUtyHDy xMakseM+aAW/83Y/Cdp4Z1cevX/vrmv9PzSC1VwC87UxCh4sNnBYF5xqLFL/TrYF IGakaFZ5+TRXakm4jfsT3QTB+CFhDrZVTmp8QgqPKM7XNOdVFFW/mqyttFwZ4B0W IHte6MkBKdfzDPXdATSAYqa08G/e/ijEmws60KADqbV5Ep9GZs212E5jeqXqubpR mLmsftr5rvggVqw/KYVAzxpxh9hZwWp3G2puK/03/rmutxRBtYJMb/1k/1iuxJXA DBCpDRpVGKum5I2ZOYizEHLr6dJhhC2PGhqYQvaLnImc9GSZzRdsJBAwypmBN3S+ itmKagGDlOetvz+5+fljwdX/JNo/p4N5ZBIUhqXXeE4RfTVrczNDPbufLkjXSHMF MawMXTH4ZmD7ximDDDjdjKanFE2AeZVbiCh1COFTv0RBDdO/m24yja+Fhv4KIxpI LaNBLkKZtQS1ROIr3ZXxmBVjMQZ55OuWoyRpwDXIusZK9x8bh9pMFSsEraaFsTXe jR5VbtD6aqs= =pZCX -----END PGP SIGNATURE-----
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