Hi Peter On Thu, May 19, 2016 at 12:32:17PM +0100, Peter Cock wrote: > Thanks Andreas,
Thanks for your very quick response. > Ah, https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=824048 > > It looks like yet another minor change to the plain text human > readable output with the latest NCBI BLAST+ v2.3.0 release is to > blame, > > $ ~/ncbi_blast/2.2.31+/blastp -query Fasta/rose.pro -evalue 1 -subject > GenBank/NC_005816.faa | grep "Query= " > Query= gi|4959044|gb|AAD34209.1|AF069992_1 LIM domain interacting RING > Query= gi|4959044|gb|AAD34209.1|AF069992_1 LIM domain interacting RING > Query= gi|4959044|gb|AAD34209.1|AF069992_1 LIM domain interacting RING > Query= gi|4959044|gb|AAD34209.1|AF069992_1 LIM domain interacting RING > Query= gi|4959044|gb|AAD34209.1|AF069992_1 LIM domain interacting RING > Query= gi|4959044|gb|AAD34209.1|AF069992_1 LIM domain interacting RING > Query= gi|4959044|gb|AAD34209.1|AF069992_1 LIM domain interacting RING > Query= gi|4959044|gb|AAD34209.1|AF069992_1 LIM domain interacting RING > Query= gi|4959044|gb|AAD34209.1|AF069992_1 LIM domain interacting RING > Query= gi|4959044|gb|AAD34209.1|AF069992_1 LIM domain interacting RING > $ ~/ncbi_blast/2.3.0+/blastp -query Fasta/rose.pro -evalue 1 -subject > GenBank/NC_005816.faa | grep "Query= " > Query= gi|4959044|gb|AAD34209.1|AF069992_1 LIM domain interacting RING > > The Biopython test was expecting 10 lines with this pattern, but there > is now only 1. This may or may not break the parser - I've not yet > checked: > > https://github.com/biopython/biopython/issues/827 This sounds like a very probable explanation for the effect. It would be great if you could come up with a patch (or a new release) so I could update the Debian package. Thanks a lot for the perfect cooperation Andreas. -- http://fam-tille.de
