Your message dated Wed, 18 May 2016 13:18:59 +0000 with message-id <e1b31nl-0002d5...@franck.debian.org> and subject line Bug#777791: fixed in ball 1.4.3~beta1-1 has caused the Debian Bug report #777791, regarding ball: ftbfs with GCC-5 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 777791: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=777791 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: src:ball Version: 1.4.2+20140406-1 Severity: normal Tags: sid stretch User: debian-...@lists.debian.org Usertags: ftbfs-gcc-5 Please keep this issue open in the bug tracker for the package it was filed for. If a fix in another package is required, please file a bug for the other package (or clone), and add a block in this package. Please keep the issue open until the package can be built in a follow-up test rebuild. The package fails to build in a test rebuild on at least amd64 with gcc-5/g++-5, but succeeds to build with gcc-4.9/g++-4.9. The severity of this report may be raised before the stretch release. The full build log can be found at: http://people.debian.org/~doko/logs/gcc5-20150205/ball_1.4.2+20140406-1_unstable_gcc5.log The last lines of the build log are at the end of this report. To build with GCC 5, either set CC=gcc-5 CXX=g++-5 explicitly, or install the gcc, g++, gfortran, ... packages from experimental. apt-get -t experimental install g++ Common build failures are C11 as the default C mode, new warnings resulting in build failures with -Werror turned on, or new/dropped symbols in Debian symbols files. For other C/C++ related build failures see the porting guide at http://gcc.gnu.org/gcc-5/porting_to.html [...] [ 12%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/bruker2DFile.o [ 12%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/commandlineParser.o [ 12%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/dockResultFile.o /«BUILDDIR»/ball-1.4.2+20140406/source/FORMAT/dockResultFile.C: In copy constructor 'BALL::DockResultFile::DockResultFile(const BALL::DockResultFile&)': /«BUILDDIR»/ball-1.4.2+20140406/source/FORMAT/dockResultFile.C:161:3: warning: base class 'class std::basic_ios<char>' should be explicitly initialized in the copy constructor [-Wextra] DockResultFile::DockResultFile(const DockResultFile &df) ^ /«BUILDDIR»/ball-1.4.2+20140406/source/FORMAT/dockResultFile.C:161:3: warning: base class 'class BALL::GenericMolFile' should be explicitly initialized in the copy constructor [-Wextra] /«BUILDDIR»/ball-1.4.2+20140406/source/FORMAT/dockResultFile.C: At global scope: /«BUILDDIR»/ball-1.4.2+20140406/source/FORMAT/dockResultFile.C:161:56: warning: unused parameter 'df' [-Wunused-parameter] DockResultFile::DockResultFile(const DockResultFile &df) ^ /«BUILDDIR»/ball-1.4.2+20140406/source/FORMAT/dockResultFile.C:161:56: warning: unused parameter 'df' [-Wunused-parameter] [ 12%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/CCP4File.o /«BUILDDIR»/ball-1.4.2+20140406/source/FORMAT/CCP4File.C: In member function 'virtual bool BALL::CCP4File::readSymmetryRecords()': /«BUILDDIR»/ball-1.4.2+20140406/source/FORMAT/CCP4File.C:231:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while (sym_lines < offset_symops_/80) ^ [ 12%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/CIFFile.o [ 12%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/DCDFile.o [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/DSN6File.o [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/GAMESSDatFile.o [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/genericMolFile.o [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/HINFile.o [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/INIFile.o [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/JCAMPFile.o [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/KCFFile.o [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/lineBasedFile.o [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/molDB.o [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/MOLFile.o [ 15%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/molFileFactory.o /«BUILDDIR»/ball-1.4.2+20140406/source/FORMAT/molFileFactory.C: In static member function 'static BALL::GenericMolFile* BALL::MolFileFactory::open(const BALL::String&, BALL::File::OpenMode)': /«BUILDDIR»/ball-1.4.2+20140406/source/FORMAT/molFileFactory.C:42:8: error: cannot convert 'std::basic_istream<char>' to 'bool' in assignment ok = std::getline(in,s); ^ make[4]: *** [CMakeFiles/BALL.dir/source/FORMAT/molFileFactory.o] Error 1 CMakeFiles/BALL.dir/build.make:1555: recipe for target 'CMakeFiles/BALL.dir/source/FORMAT/molFileFactory.o' failed make[4]: Leaving directory '/«BUILDDIR»/ball-1.4.2+20140406/build' make[3]: *** [CMakeFiles/BALL.dir/all] Error 2 CMakeFiles/Makefile2:60: recipe for target 'CMakeFiles/BALL.dir/all' failed make[3]: Leaving directory '/«BUILDDIR»/ball-1.4.2+20140406/build' make[2]: *** [CMakeFiles/BALL.dir/rule] Error 2 CMakeFiles/Makefile2:72: recipe for target 'CMakeFiles/BALL.dir/rule' failed make[2]: Leaving directory '/«BUILDDIR»/ball-1.4.2+20140406/build' make[1]: *** [BALL] Error 2 Makefile:161: recipe for target 'BALL' failed make[1]: Leaving directory '/«BUILDDIR»/ball-1.4.2+20140406/build' make: *** [build-arch-stamp] Error 2 debian/rules:37: recipe for target 'build-arch-stamp' failed dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2
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--- Begin Message ---Source: ball Source-Version: 1.4.3~beta1-1 We believe that the bug you reported is fixed in the latest version of ball, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 777...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated ball package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Wed, 18 May 2016 14:49:09 +0200 Source: ball Binary: libball1.4-data libball1.4 libball1.4-dev libballview1.4 libballview1.4-dev python-ball python-ballview ballview libball1.4-doc Architecture: source Version: 1.4.3~beta1-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: ballview - free molecular modeling and molecular graphics tool libball1.4 - Biochemical Algorithms Library libball1.4-data - Biochemical Algorithms Library (data files) libball1.4-dev - Header files for the Biochemical Algorithms Library libball1.4-doc - documentation for the BALL library libballview1.4 - Biochemical Algorithms Library, VIEW framework libballview1.4-dev - Header files for the VIEW part of the Biochemical Algorithms Libr python-ball - Python bindings for the Biochemical Algorithms Library python-ballview - Python bindings for VIEW-parts of the Biochemical Algorithms Libr Closes: 777791 787888 Changes: ball (1.4.3~beta1-1) unstable; urgency=medium . [ Andreas Tille ] * New upstream version Closes: #777791 * New homepage * Moved to Github * Adapt watch file to Github * Cherry-pick from upstream "Use c++11 on Clang" * Andreas Hildebrandt does not work on the packaging any more * cme fix dpkg-control * debian/rules: use dh Closes: #787888 * debian/control: Drop *-dbg package since this is created automatically now * delete debian/menu * polish d/copyright * better hardening * cme fix dpkg-control * do not install empty directories for docs * do not repeat section field in d/control * doc package can be installed without main package -> only suggests main package * Use libjs-jquery instead of local copy pf jquery.js * DEP5 fixes * Use python-helper properly * Enhance long description of dev package * Use Breaks where Conflicts is to strong * Remove extra license file * Add lintian override for false positive package-contains-empty-directory . [ Danny Edel ] * d/rules: Enable building and execution of unittests * Drop patch gcc5.diff (fixed upstream) * Backport patches from upstream git to fix FTBFS on recent sid: * b3679aa Fix: String failed to compile with newer GCC * 029fd2b Fix building PoseClustering with recent Boost * 3170b28 Fix compilation of BinaryFingerprintMethods_test * 7bb0166 Fixed PoseClustering test to account for changes in boost * 8ff1d1b FingerPrintSim: Fix build under clang 3.6 (also needed on gcc) * 38a955a Fix Python bindings for Box * f646875 Increased sleeping time on Socket_test * Add patches: * disable-assign-positions-from-template.patch (binary was only built, but not shipped previously, and fails to build with libeigen3-dev 3.3~beta1) * adjust-poseClustering_Test-boost-1.58.patch Checksums-Sha1: 72920502037d42a063d9a11ea4d7d92b8ab9f43f 2973 ball_1.4.3~beta1-1.dsc 05cc6905d255162934687a7f80f747cf72d074cb 56995375 ball_1.4.3~beta1.orig.tar.gz 2a398b2cacf92af8e5d4aafd92c59531b09248bd 16772 ball_1.4.3~beta1-1.debian.tar.xz Checksums-Sha256: 30bd628f001bfaae48791f58e71019f467d3cae811ad2653d2dd7946be92d1b6 2973 ball_1.4.3~beta1-1.dsc 85caeef007f54a147f9d484d47003b4240683f6d1a753babdb6797025a7de385 56995375 ball_1.4.3~beta1.orig.tar.gz a6605369e6bf0ba7842fbf46968ed47e0b9a928008e6224347a429c0d76d5fab 16772 ball_1.4.3~beta1-1.debian.tar.xz Files: ee5d396b2be773d252af24abed49c003 2973 science optional ball_1.4.3~beta1-1.dsc f8d5765bb790c70b9c1d5063ea82772b 56995375 science optional ball_1.4.3~beta1.orig.tar.gz ad613ea5e2504156cbc2b2b959762874 16772 science optional ball_1.4.3~beta1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJXPGbWAAoJEFeKBJTRxkbRcM0P/3rT/nIPvZfRZ2TvCN3f4m5h 8ervUKspfH+4ENHIJ8/R1kfk1ZAlxqK1XbKlkuqgJyqzOtg5poMuruSSc2RIcp0a 0ov/cXRuseHzGmn4fzRlbozLiyNg4bx7nT8rMV5f0nbzmn6K0x0rOryp6kT79R9U OfN+i35umAChcL0SBQebBRoNlY6itXa+fzmTWwXV9Tt1yldjehfb+i39SGbfMhrf Nf2U8Esz0wWQsQwiX75Yr6tM/liAUpntYUQrhLmvpsb7Z2dX8q8fOYPlOuODYJoM TVAuFJjp5Cmf7/6A5jL3ds8ZzNZgxI686K3ITghRAMrvc+UByZ7YWD+rPdZ+zRxd rA+wN2ED8rdVzLvovN8jeGJ+T5QuovnVVC6TFgvltM5/GQkh6ATBMJHGyeWTjap3 UZf98ZondyzEycted/BqLFhDt96wIAftlkoSCwGn5ZHN+o9+fFk8SsWzPYltm1dr ryv0wi9cBFEh929B0+HUf72lK05rrWRnbqGVt+m/TQlrAutak21cP1YMwwSawAjv tw/MwecTFwthPxwv5fg7ZLj5ix+eZ8FR+6/tIvEQgzEoNUqbCgPBqMAMqS8E/dYI cak9xfVwPz28LJvYuH6mTOFSycvHWFiuTgV6QMRJULLjyTXINXXUQv3vRq/cdzX0 21d2ELCQu/ZsDJdF6PZg =ojEf -----END PGP SIGNATURE-----
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