Source: rapache Version: 1.2.7-1 Severity: serious Justification: fails to build from source User: reproducible-bui...@lists.alioth.debian.org Usertags: ftbfs X-Debbugs-Cc: reproducible-bui...@lists.alioth.debian.org
Dear Maintainer,
rapache fails to build from source in unstable/amd64:
[..]
Setting up libfontconfig1:amd64 (2.11.0-6.4) ...
Setting up libpixman-1-0:amd64 (0.33.6-1) ...
Setting up libxau6:amd64 (1:1.0.8-1) ...
Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ...
Setting up libxcb1:amd64 (1.11.1-1) ...
Setting up libx11-data (2:1.6.3-1) ...
Setting up libx11-6:amd64 (2:1.6.3-1) ...
Setting up libxcb-render0:amd64 (1.11.1-1) ...
Setting up libxcb-shm0:amd64 (1.11.1-1) ...
Setting up libxext6:amd64 (2:1.3.3-1) ...
Setting up libxrender1:amd64 (1:0.9.9-2) ...
Setting up libcairo2:amd64 (1.14.6-1+b1) ...
Setting up libcurl3:amd64 (7.47.0-1) ...
Setting up x11-common (1:7.7+15) ...
update-rc.d: warning: start and stop actions are no longer supported; falling
back to defaults
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6:amd64 (2:1.0.9-1+b1) ...
Setting up libjpeg62-turbo:amd64 (1:1.4.2-2) ...
Setting up liblapack3 (3.6.0-2) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide
/usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up fontconfig (2.11.0-6.4) ...
Regenerating fonts cache... done.
Setting up libthai-data (0.1.24-2) ...
Setting up libdatrie1:amd64 (0.2.10-2) ...
Setting up libthai0:amd64 (0.1.24-2) ...
Setting up libpango-1.0-0:amd64 (1.40.1-1) ...
Setting up libgraphite2-3:amd64 (1.3.8-1) ...
Setting up libharfbuzz0b:amd64 (1.2.6-2) ...
Setting up libpangoft2-1.0-0:amd64 (1.40.1-1) ...
Setting up libpangocairo-1.0-0:amd64 (1.40.1-1) ...
Setting up libsm6:amd64 (2:1.2.2-1+b1) ...
Setting up libtcl8.6:amd64 (8.6.5+dfsg-2) ...
Setting up libjbig0:amd64 (2.1-3.1) ...
Setting up libtiff5:amd64 (4.0.6-1) ...
Setting up libxft2:amd64 (2.3.2-1) ...
Setting up libxss1:amd64 (1:1.2.2-1) ...
Setting up libtk8.6:amd64 (8.6.5-1) ...
Setting up libxt6:amd64 (1:1.1.5-1) ...
Setting up ca-certificates (20160104) ...
Setting up r-base-core (3.2.5.20160429-1) ...
Creating config file /etc/R/Renviron with new version
Setting up libgfortran-5-dev:amd64 (5.3.1-16) ...
Setting up gfortran-5 (5.3.1-16) ...
Setting up gfortran (4:5.3.1-1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in
auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in
auto mode
Setting up libblas-dev (3.6.0-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide
/usr/lib/libblas.so (libblas.so) in auto mode
Setting up liblapack-dev (3.6.0-2) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide
/usr/lib/liblapack.so (liblapack.so) in auto mode
Setting up libtinfo-dev:amd64 (6.0+20160319-1) ...
Setting up libncurses5-dev:amd64 (6.0+20160319-1) ...
Setting up libreadline6-dev:amd64 (6.3-8+b4) ...
Setting up libreadline-dev:amd64 (6.3-8+b4) ...
Setting up libjpeg62-turbo-dev:amd64 (1:1.4.2-2) ...
Setting up libjpeg-dev (1:1.4.2-2) ...
Setting up libpcre16-3:amd64 (2:8.38-3.1) ...
Setting up libpcre32-3:amd64 (2:8.38-3.1) ...
Setting up libpcrecpp0v5:amd64 (2:8.38-3.1) ...
Setting up libpcre3-dev:amd64 (2:8.38-3.1) ...
Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2+b1) ...
Setting up libpng-dev:amd64 (1.6.21-4) ...
Setting up libbz2-dev:amd64 (1.0.6-8) ...
Setting up liblzma-dev:amd64 (5.1.1alpha+20120614-2.1) ...
Setting up cdbs (0.4.130) ...
Setting up r-base-dev (3.2.5.20160429-1) ...
Setting up libapreq2-3 (2.13-4+b2) ...
Setting up libapreq2-dev (2.13-4+b2) ...
Setting up rapache-build-deps (1.2.7-1) ...
Processing triggers for libc-bin (2.22-7) ...
Processing triggers for systemd (229-5) ...
Processing triggers for ca-certificates (20160104) ...
Updating certificates in /etc/ssl/certs...
173 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
dpkg-buildpackage -rfakeroot -D -us -uc -b
dpkg-buildpackage: source package rapache
dpkg-buildpackage: source version 1.2.7-1
dpkg-buildpackage: source distribution unstable
dpkg-buildpackage: source changed by Ondřej Surý <ond...@debian.org>
dpkg-source --before-build rapache-1.2.7
dpkg-buildpackage: host architecture amd64
fakeroot debian/rules clean
dh clean --with apache2 --with autoreconf --with autotools-dev
dh_testdir
dh_auto_clean
dh_autoreconf_clean
dh_autotools-dev_restoreconfig
dh_clean
debian/rules build
dh build --with apache2 --with autoreconf --with autotools-dev
dh_testdir
dh_update_autotools_config
dh_autoreconf
aclocal: warning: autoconf input should be named 'configure.ac', not
'configure.in'
configure.in:13: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected
in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from...
m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from...
m4/libtool.m4:5253: _LT_LANG_C_CONFIG is expanded from...
m4/libtool.m4:138: _LT_SETUP is expanded from...
m4/libtool.m4:67: LT_INIT is expanded from...
m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from...
configure.in:13: the top level
configure.in:13: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected
in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from...
m4/libtool.m4:5253: _LT_LANG_C_CONFIG is expanded from...
m4/libtool.m4:138: _LT_SETUP is expanded from...
m4/libtool.m4:67: LT_INIT is expanded from...
m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from...
configure.in:13: the top level
configure.in:13: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected
in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from...
m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from...
m4/libtool.m4:5253: _LT_LANG_C_CONFIG is expanded from...
m4/libtool.m4:138: _LT_SETUP is expanded from...
m4/libtool.m4:67: LT_INIT is expanded from...
m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from...
configure.in:13: the top level
configure.in:13: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected
in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from...
m4/libtool.m4:5253: _LT_LANG_C_CONFIG is expanded from...
m4/libtool.m4:138: _LT_SETUP is expanded from...
m4/libtool.m4:67: LT_INIT is expanded from...
m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from...
configure.in:13: the top level
configure.in:13: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected
in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from...
m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from...
m4/libtool.m4:5253: _LT_LANG_C_CONFIG is expanded from...
m4/libtool.m4:138: _LT_SETUP is expanded from...
m4/libtool.m4:67: LT_INIT is expanded from...
m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from...
configure.in:13: the top level
configure.in:13: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected
in body
../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from...
../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from...
../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from...
m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from...
m4/libtool.m4:5253: _LT_LANG_C_CONFIG is expanded from...
m4/libtool.m4:138: _LT_SETUP is expanded from...
m4/libtool.m4:67: LT_INIT is expanded from...
m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from...
configure.in:13: the top level
libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'tools'.
libtoolize: copying file 'tools/ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
aclocal: warning: autoconf input should be named 'configure.ac', not
'configure.in'
automake: warning: autoconf input should be named 'configure.ac', not
'configure.in'
configure.in:13: installing 'tools/compile'
configure.in:5: installing 'tools/missing'
Makefile.am:26: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or
'*_CPPFLAGS')
dh_autotools-dev_updateconfig
debian/rules override_dh_auto_configure
make[1]: Entering directory
'/home/lamby/temp/cdt.20160430105236.DYMPfcKmm0.rapache/rapache-1.2.7'
dh_auto_configure -- --with-R=/usr/bin/R --with-apache2-apxs=/usr/bin/apxs2
--with-apreq2-config=/usr/bin/apreq2-config
./configure --build=x86_64-linux-gnu --prefix=/usr
--includedir=\${prefix}/include --mandir=\${prefix}/share/man
--infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var
--disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu
--libexecdir=\${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode
--disable-dependency-tracking --with-R=/usr/bin/R
--with-apache2-apxs=/usr/bin/apxs2 --with-apreq2-config=/usr/bin/apreq2-config
configure: WARNING: unrecognized options: --disable-dependency-tracking,
--with-apache2-apxs
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking how to print strings... printf
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu
format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format...
func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared
libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for sys/types.h... (cached) yes
checking for unistd.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for --with-apxs... no
checking for apxs... /usr/bin/apxs
checking for R Program... /usr/bin/R
checking for apreq2-config... checking that generated files are newer than
configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating mod_R.h
config.status: executing libtool commands
configure: WARNING: unrecognized options: --disable-dependency-tracking,
--with-apache2-apxs
make[1]: Leaving directory
'/home/lamby/temp/cdt.20160430105236.DYMPfcKmm0.rapache/rapache-1.2.7'
dh_auto_build
make -j1
make[1]: Entering directory
'/home/lamby/temp/cdt.20160430105236.DYMPfcKmm0.rapache/rapache-1.2.7'
Configuring libapreq2
touch .apreq-config
Compiling mod_R
/usr/bin/apxs -I/usr/share/R/include -I/usr/include/apreq2
-I/usr/include/apr-1.0 -I/usr/include -c mod_R.c -Wl,--export-dynamic -fopenmp
-fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -L/usr/lib/R/lib -lR -lpcre
-llzma -lbz2 -lz -lrt -ldl -lm -licuuc -licui18n -L/usr/lib/x86_64-linux-gnu
-lapreq2
/usr/share/apr-1.0/build/libtool --mode=compile --tag=disable-static
x86_64-linux-gnu-gcc -prefer-pic -pipe -g -O2 -fstack-protector-strong -Wformat
-Werror=format-security -DBUILD_DATETIME='"2016-04-10T12:03:41"' -Wdate-time
-D_FORTIFY_SOURCE=2 -DLINUX -D_REENTRANT -D_GNU_SOURCE -pthread
-I/usr/include/apache2 -I/usr/include/apr-1.0 -I/usr/include/apr-1.0
-I/usr/include -I/usr/share/R/include -I/usr/include/apreq2
-I/usr/include/apr-1.0 -I/usr/include -c -o mod_R.lo mod_R.c && touch mod_R.slo
libtool: compile: x86_64-linux-gnu-gcc -pipe -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -DBUILD_DATETIME=\"2016-04-10T12:03:41\"
-Wdate-time -D_FORTIFY_SOURCE=2 -DLINUX -D_REENTRANT -D_GNU_SOURCE -pthread
-I/usr/include/apache2 -I/usr/include/apr-1.0 -I/usr/include/apr-1.0
-I/usr/include -I/usr/share/R/include -I/usr/include/apreq2
-I/usr/include/apr-1.0 -I/usr/include -c mod_R.c -fPIC -DPIC -o .libs/mod_R.o
mod_R.c: In function 'RApache_getServer':
mod_R.c:2125:18: warning: implicit declaration of function
'ap_get_server_port' [-Wimplicit-function-declaration]
INTMBR("port",ap_get_server_port(MR_Request.r));
^
mod_R.c:2095:98: note: in definition of macro 'INTMBR'
#define INTMBR(n,v) STRING_PTR(names)[i]=mkChar(n); val = NEW_INTEGER(1);
INTEGER_DATA(val)[0] = v; SET_ELEMENT(MR_Request.serverVar,i++,val)
^
/usr/share/apr-1.0/build/libtool --mode=link --tag=disable-static
x86_64-linux-gnu-gcc -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -o mod_R.la
-rpath /usr/lib/apache2/modules -module -avoid-version mod_R.lo
-Wl,--export-dynamic -fopenmp -fPIE -pie -Wl,-z,relro -Wl,-z,now
-Wl,--as-needed -L/usr/lib/R/lib -lR -lpcre -llzma -lbz2 -lz -lrt -ldl -lm
-licuuc -licui18n -L/usr/lib/x86_64-linux-gnu -lapreq2
libtool: link: x86_64-linux-gnu-gcc -shared -fPIC -DPIC .libs/mod_R.o
-L/usr/lib/R/lib -lR -lpcre -llzma -lbz2 -lz -lrt -ldl -lm -licuuc -licui18n
-L/usr/lib/x86_64-linux-gnu -lapreq2 -Wl,--as-needed -Wl,-z -Wl,relro -Wl,-z
-Wl,now -Wl,--export-dynamic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now
-Wl,--as-needed -fopenmp -Wl,-soname -Wl,mod_R.so -o .libs/mod_R.so
/usr/bin/ld: cannot find -licuuc
/usr/bin/ld: cannot find -licui18n
collect2: error: ld returned 1 exit status
apxs:Error: Command failed with rc=65536
.
Makefile:435: recipe for target 'mod_R.so' failed
make[1]: *** [mod_R.so] Error 1
make[1]: Leaving directory
'/home/lamby/temp/cdt.20160430105236.DYMPfcKmm0.rapache/rapache-1.2.7'
dh_auto_build: make -j1 returned exit code 2
debian/rules:20: recipe for target 'build' failed
make: *** [build] Error 2
[..]
The full build log is attached.
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` la...@debian.org / chris-lamb.co.uk
`-
rapache.1.2.7-1.unstable.amd64.log.txt.gz
Description: Binary data
