Your message dated Wed, 27 Apr 2016 10:00:29 +0000
with message-id <e1avmgj-0004lb...@franck.debian.org>
and subject line Bug#791095: fixed in libbpp-phyl-omics 2.2.0-1
has caused the Debian Bug report #791095,
regarding libbpp-phyl-omics: library transition may be needed when GCC 5 is the
default
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
791095: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=791095
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:libbpp-phyl-omics
Version: 2.1.0-1
Severity: important
Tags: sid stretch
User: debian-...@lists.debian.org
Usertags: libstdc++-cxx11
Background [1]: libstdc++6 introduces a new ABI to conform to the
C++11 standard, but keeps the old ABI to not break existing binaries.
Packages which are built with g++-5 from experimental (not the one
from testing/unstable) are using the new ABI. Libraries built from
this source package export some of the new __cxx11 or B5cxx11 symbols,
and dropping other symbols. If these symbols are part of the API of
the library, then this rebuild with g++-5 will trigger a transition
for the library.
What is needed:
- Rebuild the library using g++/g++-5 from experimental. Note that
most likely all C++ libraries within the build dependencies need
a rebuild too. You can find the log for a rebuild in
https://people.debian.org/~doko/logs/gcc5-20150701/
Search for "BEGIN GCC CXX11" in the log.
- Decide if the symbols matching __cxx11 or B5cxx11 are part of the
library API, and are used by the reverse dependencies of the
library.
- If there are no symbols matching __cxx11 or B5cxx11 in the symbols
forming the library API, you should close this issue with a short
explanation.
- If there are no reverse dependencies, it should be the package
maintainers decision if a transition is needed. However this might
break software which is not in the Debian archive, and built
against these packages.
- If a library transition is needed, please prepare for the change.
Rename the library package, append "v5" to the name of the package
(e.g. libfoo2 -> libfoo2v5). Such a change can be avoided, if you
have a soversion bump and you upload this version instead of the
renamed package. Prepare a patch and attach it to this issue (mark
this issue with patch), so that it is possible to NMU such a
package. We'll probably have more than hundred transitions
triggered. Then reassign the issue to release.debian.org and
properly tag it as a transition issue, by sending an email to
cont...@bugs.debian.org:
user release.debian....@packages.debian.org
usertag <this issue> + transition
block <this issue> by 790756
reassign <this issue> release.debian.org
- If unsure if a transition is needed, please tag the issue with help
to ask for feedback from other Debian developers.
The libstdc++6 transition will be a large one, and it will come with a
lot of pain. Please help it by preparing the follow-up transitions.
[1] https://wiki.debian.org/GCC5#libstdc.2B-.2B-_ABI_transition
--- End Message ---
--- Begin Message ---
Source: libbpp-phyl-omics
Source-Version: 2.2.0-1
We believe that the bug you reported is fixed in the latest version of
libbpp-phyl-omics, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 791...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated libbpp-phyl-omics package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sat, 23 Apr 2016 14:32:11 +0200
Source: libbpp-phyl-omics
Binary: libbpp-phyl-omics-dev libbpp-phyl-omics1v5
Architecture: source amd64
Version: 2.2.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
libbpp-phyl-omics-dev - Bio++ Phylogenetics library: genomics components
(development fil
libbpp-phyl-omics1v5 - Bio++ Phylogenetics library: genomics components
Closes: 791095
Changes:
libbpp-phyl-omics (2.2.0-1) unstable; urgency=medium
.
* New upstream version
* Moved packaging to Git
* Better description
* Add watch file
* Team maintenance in Debian Med team
* cme fix dpkg-control
* Source package in Section: science
* debhelper 9
* DEP5
* short dh rules file using d-shlibs
* Library transition
Closes: #791095
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