Your message dated Sun, 10 Apr 2016 22:00:22 +0000 with message-id <e1apnp4-0004ba...@franck.debian.org> and subject line Bug#820028: fixed in python-biom-format 2.1.5+dfsg-2 has caused the Debian Bug report #820028, regarding biom-format-tools, python-biom-format-doc: fails to upgrade from 'jessie' - trying to overwrite /usr/bin/biom, /usr/share/doc-base/python-biom-format to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 820028: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=820028 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: biom-format-tools,python-biom-format-doc Version: 2.1.5+dfsg-1 Severity: serious User: debian...@lists.debian.org Usertags: piuparts Hi, during a test with piuparts I noticed your package fails to upgrade from 'jessie'. It installed fine in 'jessie', then the upgrade to 'stretch' fails because it tries to overwrite other packages files without declaring a Breaks+Replaces relation. See policy 7.6 at https://www.debian.org/doc/debian-policy/ch-relationships.html#s-replaces >From the attached log (scroll to the bottom...): Selecting previously unselected package biom-format-tools. Preparing to unpack .../biom-format-tools_2.1.5+dfsg-1_amd64.deb ... Unpacking biom-format-tools (2.1.5+dfsg-1) ... dpkg: error processing archive /var/cache/apt/archives/biom-format-tools_2.1.5+dfsg-1_amd64.deb (--unpack): trying to overwrite '/usr/bin/biom', which is also in package python-biom-format 2.1+dfsg-1 Errors were encountered while processing: /var/cache/apt/archives/biom-format-tools_2.1.5+dfsg-1_amd64.deb Selecting previously unselected package python-biom-format-doc. Preparing to unpack .../python-biom-format-doc_2.1.5+dfsg-1_all.deb ... Unpacking python-biom-format-doc (2.1.5+dfsg-1) ... dpkg: error processing archive /var/cache/apt/archives/python-biom-format-doc_2.1.5+dfsg-1_all.deb (--unpack): trying to overwrite '/usr/share/doc-base/python-biom-format', which is also in package python-biom-format 2.1+dfsg-1 Errors were encountered while processing: /var/cache/apt/archives/python-biom-format-doc_2.1.5+dfsg-1_all.deb cheers, Andreas
python-biom-format=2.1+dfsg-1_biom-format-tools=2.1.5+dfsg-1.log.gz
Description: application/gzip
--- End Message ---
--- Begin Message ---Source: python-biom-format Source-Version: 2.1.5+dfsg-2 We believe that the bug you reported is fixed in the latest version of python-biom-format, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 820...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated python-biom-format package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sun, 10 Apr 2016 21:45:01 +0200 Source: python-biom-format Binary: python-biom-format python3-biom-format python-biom-format-doc biom-format-tools Architecture: source amd64 all Version: 2.1.5+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: biom-format-tools - command-line tools for BIOM format python-biom-format - Biological Observation Matrix (BIOM) format (Python 2) python-biom-format-doc - documentation for BIOM format python3-biom-format - Biological Observation Matrix (BIOM) format (Python 3) Closes: 820028 820621 Changes: python-biom-format (2.1.5+dfsg-2) unstable; urgency=medium . * Breaks+Replaces: python-biom-format (<= 2.1+dfsg-1) Closes: #820028 * Enable building arch all packages separately Closes: #820621 Checksums-Sha1: 112e15d31c5ba35edc1862454d249083eb5df0c4 2632 python-biom-format_2.1.5+dfsg-2.dsc 87c6af725d8c655b920aeabaed1d98a3d03931f0 7636 python-biom-format_2.1.5+dfsg-2.debian.tar.xz 9c5aa365d419fe1fc85b18d9610853288be22644 10878 biom-format-tools_2.1.5+dfsg-2_amd64.deb 607d24f22e8997655da1602e0cdd61f054b79412 218000 python-biom-format-dbgsym_2.1.5+dfsg-2_amd64.deb 15f80d9a5389187f7a8af99952edfac26482bcfc 65268 python-biom-format-doc_2.1.5+dfsg-2_all.deb 86be5e5a12ee653e3647082bb2d5406d75b0e6d1 171176 python-biom-format_2.1.5+dfsg-2_amd64.deb 8b5156fe77fc0db16f56c27cc75355fbb4dabb1c 186524 python3-biom-format-dbgsym_2.1.5+dfsg-2_amd64.deb 57e16014ce9b69102730deb1c82d382f70bbf198 160656 python3-biom-format_2.1.5+dfsg-2_amd64.deb Checksums-Sha256: bf3908709c94b66355ffdf48b4bd1113edbbbe00151ff86496a6cca3393d23ac 2632 python-biom-format_2.1.5+dfsg-2.dsc fe785fa5e0db69d6cc8b42998e9c503d0e1c465110dd7caed07cd2b6ba7ff0fc 7636 python-biom-format_2.1.5+dfsg-2.debian.tar.xz 03f0982afdfbe2ebdadacffdb2da9998738ce964364075cce3ff6abbf7f94305 10878 biom-format-tools_2.1.5+dfsg-2_amd64.deb fe8f4cd6336f024d300a03254d8a8b4d28b5c2e889bd77a8aa02f09c64ec1d67 218000 python-biom-format-dbgsym_2.1.5+dfsg-2_amd64.deb 91d99e575e8884d8c562c5f7b82be074f73366fc1b9879237fdcfe9322f36adb 65268 python-biom-format-doc_2.1.5+dfsg-2_all.deb 05124cdfb5309399155b7bf8628c16f044e1dad9161164872f2922d22ec42036 171176 python-biom-format_2.1.5+dfsg-2_amd64.deb 99aeaf85975b2a720e622d7c9b9bd107fca8114dc395fe063b4cada199fd460d 186524 python3-biom-format-dbgsym_2.1.5+dfsg-2_amd64.deb 556c55e0a68032c1f6a3e35488579c7e3939f804d786f0084bf779cdc44f0a84 160656 python3-biom-format_2.1.5+dfsg-2_amd64.deb Files: dfa7f26b36f8d2bb0f0ffc81c99e53ed 2632 python optional python-biom-format_2.1.5+dfsg-2.dsc 85c0d2842900293905f0f3b28d064101 7636 python optional python-biom-format_2.1.5+dfsg-2.debian.tar.xz fab6cbfaddfe391a468aef02fb11e5ad 10878 misc optional biom-format-tools_2.1.5+dfsg-2_amd64.deb 60b3cf61ed49ac6d535b166083888e0d 218000 debug extra python-biom-format-dbgsym_2.1.5+dfsg-2_amd64.deb 763114a6fd0469022551ddba7956e101 65268 doc optional python-biom-format-doc_2.1.5+dfsg-2_all.deb 9d0b60e42e0810c1bb18c55365b4850a 171176 python optional python-biom-format_2.1.5+dfsg-2_amd64.deb 22c66b3612de4ce59b7004a6652845dc 186524 debug extra python3-biom-format-dbgsym_2.1.5+dfsg-2_amd64.deb 8ed64ab62beceda76ceedaac44f784f3 160656 python optional python3-biom-format_2.1.5+dfsg-2_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJXCq/jAAoJEFeKBJTRxkbRz8oP/0SXBfnUKYOlRSW6XTgvsJDn I0WrUspuHNm4DtSwnLhgMjOcOJkmOITOek/cYbCPb/KFaOfvw1eO8Nz8hmA7XYmD 5Mq10mc7tLlZkHE5swOwp59nBJDgYAPnHPKwxOrp59r7JQGl3ceaNvuHJQ31HmTw Ez/hBqfGADxb9a6nghwrFccfhmY+5bHnZMTjn5O9bmRdUADSJOph8fUooQjb+5iU rTWxfI0GFYmbH+s/c9Ls4eic1RlwGnaUkYcjX2XcnuRzjn8k7L3P51IZpj8X9nHJ apRnQAmT+Aw17p+JIe3dAYRljYLddy3CyWUZTgyUoI8xvekGJiOMn6U5/KyYhJUN Z0tzAlLLQS+lpscvgo9kjjd9wbMjSaAKR6zw+YF2ABY2R87IRE+Wdw2w1P4m86Jn YR2Pc1m1D6tGjS1IIeO5HGpwsaEoUoUJzjlfP8iXgzX2u1K4NkPkLpVM0qwHY7Kw e9VzTcH0XulBVJBH56i+mh7F+DHO7qKDxxUQASWn3zt0B2+C7ysYb3fB4DTlrBUk m0eT9Nwurh9oS3s/Wd35JQCwF4N7sNrJxxQr1/FZKBW/+K7Se3eiLj80izbNjKbe 7Q4Yn92fBHF4PtXf47PwJF5TK5t1Jv7tgROnHifYR2h8DdWbJHkwV0krjIegDcGT Hpi2TQPqvPwag2GAZwzK =YBDD -----END PGP SIGNATURE-----
--- End Message ---
