Your message dated Sun, 21 Feb 2016 06:49:30 +0000 with message-id <e1axnpi-0004vv...@franck.debian.org> and subject line Bug#815174: fixed in staden 2.0.0+b10-2 has caused the Debian Bug report #815174, regarding staden: Missing links in /usr/bin to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 815174: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=815174 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: staden Version: 2.0.0+b10-1.1 Severity: grave Justification: renders package unusable Dear Maintainer, I tried to convert *.ab1 files to *.exp files with pregap4, which failed with an error message that eba could not be found. I copied an eba from the sourceforge download bay into /usr/bin and retried conversion of the ABI chromatograms. The error message concerning eba was gone, instead conversion failed because of a missing init_exp command. Thereafter I had a closer look into /usr/bin and realized that the staden parts were links to /usr/lib/staden/bin, but of the multiple files in the sourceforge package, only pregap, gap4, gap5, trev and spin had such a link. I thus, created the missing links by hand and conversion worked out. The files could be opened and assembled with gap4. Working furtheron with the files, however, is still hampered by another problem, which I suspect to be of a different kind, thus will be subject to a separate bug report. Kerstin -- System Information: Debian Release: 8.3 APT prefers stable-updates APT policy: (500, 'stable-updates'), (500, 'stable') Architecture: i386 (i686) Kernel: Linux 3.2.0-4-686-pae (SMP w/2 CPU cores) Locale: LANG=de_DE.utf8, LC_CTYPE=de_DE.utf8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) Versions of packages staden depends on: ii libc6 2.19-18+deb8u3 ii libcurl3 7.38.0-4+deb8u3 ii libfontconfig1 2.11.0-6.3 ii libfreetype6 2.5.2-3+deb8u1 ii libgcc1 1:4.9.2-10 ii liblzma5 5.1.1alpha+20120614-2+b3 ii libpng12-0 1.2.50-2+deb8u2 ii libstaden-read1 1.13.7-1 ii libstdc++6 4.9.2-10 ii libtcl8.6 8.6.2+dfsg-2 ii libtk8.6 8.6.2-1 ii libx11-6 2:1.6.2-3 ii libxext6 2:1.3.3-1 ii libxft2 2.3.2-1 ii libxss1 1:1.2.2-1 ii staden-common 2.0.0+b10-1.1 ii staden-io-lib-utils 1.13.7-1 ii tklib 0.6-1 ii zlib1g 1:1.2.8.dfsg-2+b1 staden recommends no packages. Versions of packages staden suggests: pn staden-doc <none> -- no debconf information
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--- Begin Message ---Source: staden Source-Version: 2.0.0+b10-2 We believe that the bug you reported is fixed in the latest version of staden, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 815...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated staden package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sun, 21 Feb 2016 07:30:27 +0100 Source: staden Binary: staden staden-common Architecture: source all amd64 Version: 2.0.0+b10-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: staden - DNA sequence assembly (Gap4/Gap5), editing and analysis tools staden-common - Architecture independent files for Staden Closes: 815174 Changes: staden (2.0.0+b10-2) unstable; urgency=medium . * Make sure all tools will be found by GUI programs Closes: #815174 * cme fix dpkg-control * move bash completions from etc to usr/share/bash-completion/completions * fix names of desktop files to match names of GUI executables * fix some spelling issues Checksums-Sha1: cf9d5a9dac140a065d8d453daf7a7ae8d4cbd988 2212 staden_2.0.0+b10-2.dsc c0201a8bdcfb3348025adc44bc14d493302aa3eb 15372 staden_2.0.0+b10-2.debian.tar.xz eb4b1fe64cd4a6eca279e07f872cf31b2fc0d40a 1939798 staden-common_2.0.0+b10-2_all.deb 8236b2c3ee82e2ccdbdc1f79043c62703159105c 4370256 staden-dbgsym_2.0.0+b10-2_amd64.deb 790aa0b395c74724253eb10ce0af2c98c7ba50fa 1567162 staden_2.0.0+b10-2_amd64.deb Checksums-Sha256: ea63de27e3db905e1888aff991e88dce5562197b2e07e393d0da110aeb72fd37 2212 staden_2.0.0+b10-2.dsc 7634f7b0f0fc78d3c12881f17a46da194620ab492f074b90382702a19baa6e58 15372 staden_2.0.0+b10-2.debian.tar.xz f3634dd9e3df2f4361eed3cba774f6e85a30d7f5b4ece2a85ce9d7ca668f05cd 1939798 staden-common_2.0.0+b10-2_all.deb de2a11f2cf555b6d467cade186561eac08f7d87c64aa41a07b9227a559520ba0 4370256 staden-dbgsym_2.0.0+b10-2_amd64.deb 9564fd0a0fa889ab46b9611857d1f3d3b248adddddbeca657bfc1c17abf1d14f 1567162 staden_2.0.0+b10-2_amd64.deb Files: 5f0772aec8c26fca524d091b2cc70160 2212 science optional staden_2.0.0+b10-2.dsc 86ac2ffbe9a89326e43cf9098245da87 15372 science optional staden_2.0.0+b10-2.debian.tar.xz 8e0654c4814b596b02c5893b9de8f97a 1939798 science optional staden-common_2.0.0+b10-2_all.deb 122e1017ee0988d9a46021225e85eca2 4370256 debug extra staden-dbgsym_2.0.0+b10-2_amd64.deb a21995be4006989c411d1746ceeb0d08 1567162 science optional staden_2.0.0+b10-2_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v2 iQIcBAEBCAAGBQJWyVtgAAoJEFeKBJTRxkbRLtoP/ice55nL9Ubn/56LpY599wHA LCJxJglsjm3dxrvtYYBEZoADd2hUjf6sAmk12Ybx2BfxaLVCw8Ws2aYsoRS3gVXC UWzapniVl4YeqTjsZMIp0mRXab4zVhL3wx0nb+CKza6ziRF7uNlCKtYv81+QvSMh lLVES1TyiBS1LzOw5UE7ePnaFZnZGWKzCDN2Grogz/bDPc7d64XW2uZO4+eCM8rl FjL1pS2I+PmwTd7rPU9oH2xkgomvVFXds3tjoaNmqXq47gvpf4p0uNjbS/0TKp0h X98vhTjxiDPt6vvIbK02BJ6ETM6xqRAtESINZImWPDo+xgqumuwWQdBB0Q7oCY25 192PV9jnPEqEUkyDGhAd6PIOIvRwXz5Z1xlq3BQAXFCXZ/GehaZIdFbCBRcd9KbC vP903qCV529RI3wDE9LIoDf+Ci0NMTEDgAVMfw5Yq/JQHBSNqf4wILFGvQ648RDn MpzsBCbui6sxRxSWO3O3AmrcCxpA9QrVF8T1HmThb4GcGc4BL+ORkTMQLhB64UhI 5/F6VYaZvYQiM7YJFp8zvplVXd92iEujCr8JznGFbU1RBc8jeo8ku1L+vMU1L8C6 UXsSYTVNpCJ65EebYs+WL8IiHnFBH0t6Q3Y+S1Qzg+uzKug5JgWUaV6+NHntzCix 5Q8EE23DICiHM5kRnkBp =kn2Q -----END PGP SIGNATURE-----
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