Your message dated Wed, 10 Feb 2016 09:51:10 +0000
with message-id <e1atrqu-0006ts...@franck.debian.org>
and subject line Bug#814299: fixed in plast 2.3.1+dfsg-2
has caused the Debian Bug report #814299,
regarding plast: FTBFS without SSE2
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
814299: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=814299
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: plast
Version: 2.3.1+dfsg-1
Severity: serious
Justification: fails to build from source
Hi, Andreas.
Builds of plast for architectures besides the handful that (always)
support SSE2 have been failing, per the log excerpt below. Please
take a look, and either arrange to accommodate the remaining platforms
or officially declare plast to be
Architecture: any-amd64 x32
Thanks!
/«BUILDDIR»/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:28:10:
warning: #warning error undefined __SSE3__ or __SSE2__ [-Wcpp]
#warning error undefined __SSE3__ or __SSE2__
^
/«BUILDDIR»/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:
In member function 'void
algo::hits::gapped::SmallGapHitIteratorSSE8::computeScores(size_t, const
LETTER*, const LETTER*, int*)':
/«BUILDDIR»/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:294:5:
error: '__m128i' was not declared in this scope
__m128i vscore_gap_col;
^
[...]
/«BUILDDIR»/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:306:13:
error: expected ';' before 'vtemp1'
__m128i vtemp1;
^
/«BUILDDIR»/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:309:5:
error: 'vgap_extend' was not declared in this scope
vgap_extend = _mm_set1_epi16 (-_parameters->extendGapCost);
^
/«BUILDDIR»/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:309:62:
error: '_mm_set1_epi16' was not declared in this scope
vgap_extend = _mm_set1_epi16 (-_parameters->extendGapCost);
^
[...]
/«BUILDDIR»/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:450:54:
error: '_mm_extract_epi16' was not declared in this scope
scores[0] = _mm_extract_epi16 (vbest_score,0);
^
CMakeFiles/PlastLibrary.dir/build.make:1193: recipe for target
'CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o'
failed
--- End Message ---
--- Begin Message ---
Source: plast
Source-Version: 2.3.1+dfsg-2
We believe that the bug you reported is fixed in the latest version of
plast, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 814...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated plast package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 10 Feb 2016 09:22:31 +0100
Source: plast
Binary: plast plast-example
Architecture: source amd64 all
Version: 2.3.1+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
plast - Parallel Local Sequence Alignment Search Tool
plast-example - Parallel Local Sequence Alignment Search Tool (example data)
Closes: 814299
Changes:
plast (2.3.1+dfsg-2) unstable; urgency=medium
.
* Make sure wrapper script is calling bash
* Restrict to architectures featuring SSE
Closes: #814299
* Fix spelling
* Add Upstream-Contact
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Files:
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plast-dbgsym_2.3.1+dfsg-2_amd64.deb
a0963e39abbbfb3000b36f0adb320a08 6363314 science optional
plast-example_2.3.1+dfsg-2_all.deb
651ed49efa05ddf4784df5b24c835474 572936 science optional
plast_2.3.1+dfsg-2_amd64.deb
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