Hi all, I spotted this via an automated @DebianBug Twitter posting: https://twitter.com/DebianBug/status/693569490655776768 https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=813262
Andreas has dealt with other issues like this in the past, but I wanted to make this explicit on the issue tracker: This isn't a problem in Biopython itself, but a Biopython test case calling phyml indicates there is a problem with the Debian phyml package. Should the phyml GPU problem be filed under the phyml Debian package, perhaps adding a simple basic check to its tests?: phyml -i Phylip/interlaced2.phy -d aa This sample input test file is available here, also used as an example in the EMBOSS suite: https://github.com/biopython/biopython/blob/master/Tests/Phylip/interlaced2.phy I suspect any PHYLIP input file would work for checking the binary works and might help catch this apparent compilation issue earlier. Looking over the upstream Makefile it was not obvious that there is any testing like this being done at the moment, but there are example files likely to be useful for adding such a test: https://github.com/stephaneguindon/phyml Thanks, Peter (Biopython developer)
