Source: hdf-eos5 Version: 5.1.15.dfsg.1-4 Severity: serious Justification: fails to build from source User: reproducible-bui...@lists.alioth.debian.org Usertags: ftbfs X-Debbugs-Cc: reproducible-bui...@lists.alioth.debian.org
Dear Maintainer,
hdf-eos5 fails to build from source in unstable/amd64:
[..]
configure:19095: error: HDF5 was linked with SZIP, but --with-szlib was not
given
## ---------------- ##
## Cache variables. ##
## ---------------- ##
ac_cv_build=x86_64-pc-linux-gnu
ac_cv_c_compiler_gnu=yes
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=set
ac_cv_env_CFLAGS_value='-g -O2 -fstack-protector-strong -Wformat
-Werror=format-security -D_HDFEOS5_THREADSAFE -Df2cFortran'
ac_cv_env_CPPFLAGS_set=set
ac_cv_env_CPPFLAGS_value='-Wdate-time -D_FORTIFY_SOURCE=2'
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_F77_set=
ac_cv_env_F77_value=
ac_cv_env_FCFLAGS_set=set
ac_cv_env_FCFLAGS_value='-g -O2 -fstack-protector-strong'
ac_cv_env_FC_set=
ac_cv_env_FC_value=
ac_cv_env_FFLAGS_set=set
ac_cv_env_FFLAGS_value='-g -O2 -fstack-protector-strong'
ac_cv_env_LDFLAGS_set=set
ac_cv_env_LDFLAGS_value='-Wl,-z,relro -lpthread'
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_build_alias_set=set
ac_cv_env_build_alias_value=x86_64-linux-gnu
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_fc_compiler_gnu=yes
ac_cv_header_dlfcn_h=yes
ac_cv_header_hdf5_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_unistd_h=yes
ac_cv_header_zlib_h=yes
ac_cv_host=x86_64-pc-linux-gnu
ac_cv_lib_hdf5_H5Fcreate=yes
ac_cv_lib_m_ceil=yes
ac_cv_lib_z_compress2=yes
ac_cv_objext=o
ac_cv_path_EGREP='/bin/grep -E'
ac_cv_path_FGREP='/bin/grep -F'
ac_cv_path_GREP=/bin/grep
ac_cv_path_SED=/bin/sed
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_mkdir=/bin/mkdir
ac_cv_prog_AWK=mawk
ac_cv_prog_CPP='gcc -E'
ac_cv_prog_ac_ct_AR=ar
ac_cv_prog_ac_ct_CC=gcc
ac_cv_prog_ac_ct_FC=gfortran
ac_cv_prog_ac_ct_OBJDUMP=objdump
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_ac_ct_STRIP=strip
ac_cv_prog_cc_c89=
ac_cv_prog_cc_g=yes
ac_cv_prog_fc_g=yes
ac_cv_prog_make_make_set=yes
ac_cv_sizeof_intp=8
am_cv_CC_dependencies_compiler_type=none
am_cv_make_support_nested_variables=yes
am_cv_prog_cc_c_o=yes
he2_cv_fortran90_compiler=yes
he5_cv_32ptr=no
he5_cv_f2cFortran_defined=yes
he5_cv_hdf5_szip_can_decode=yes
he5_cv_hdf5_szip_can_encode=yes
lt_cv_ar_at_file=@
lt_cv_archive_cmds_need_lc=no
lt_cv_deplibs_check_method=pass_all
lt_cv_file_magic_cmd='$MAGIC_CMD'
lt_cv_file_magic_test_file=
lt_cv_ld_reload_flag=-r
lt_cv_nm_interface='BSD nm'
lt_cv_objdir=.libs
lt_cv_path_LD=/usr/bin/ld
lt_cv_path_NM='/usr/bin/nm -B'
lt_cv_path_mainfest_tool=no
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_c_o_FC=yes
lt_cv_prog_compiler_pic='-fPIC -DPIC'
lt_cv_prog_compiler_pic_FC=-fPIC
lt_cv_prog_compiler_pic_works=yes
lt_cv_prog_compiler_pic_works_FC=yes
lt_cv_prog_compiler_rtti_exceptions=no
lt_cv_prog_compiler_static_works=yes
lt_cv_prog_compiler_static_works_FC=yes
lt_cv_prog_gnu_ld=yes
lt_cv_sharedlib_from_linklib_cmd='printf %s\n'
lt_cv_shlibpath_overrides_runpath=no
lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[
]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][
]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\'''
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/
{\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/
{"\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^
]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\)
\(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\)
\([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int
\1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\'''
lt_cv_sys_max_cmd_len=1572864
lt_cv_to_host_file_cmd=func_convert_file_noop
lt_cv_to_tool_file_cmd=func_convert_file_noop
## ----------------- ##
## Output variables. ##
## ----------------- ##
ACLOCAL='${SHELL}
/home/lamby/temp/cdt.20160130001950.M1VKk1na8D/hdf-eos5-5.1.15.dfsg.1/config/missing
aclocal-1.15'
AMDEPBACKSLASH=''
AMDEP_FALSE=''
AMDEP_TRUE='#'
AMTAR='$${TAR-tar}'
AM_BACKSLASH='\'
AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
AM_DEFAULT_VERBOSITY='1'
AM_V='$(V)'
AR='ar'
AUTOCONF='${SHELL}
/home/lamby/temp/cdt.20160130001950.M1VKk1na8D/hdf-eos5-5.1.15.dfsg.1/config/missing
autoconf'
AUTOHEADER='${SHELL}
/home/lamby/temp/cdt.20160130001950.M1VKk1na8D/hdf-eos5-5.1.15.dfsg.1/config/missing
autoheader'
AUTOMAKE='${SHELL}
/home/lamby/temp/cdt.20160130001950.M1VKk1na8D/hdf-eos5-5.1.15.dfsg.1/config/missing
automake-1.15'
AWK='mawk'
CC='gcc'
CCDEPMODE='depmode=none'
CFLAGS='-g -O2 -fstack-protector-strong -Wformat -Werror=format-security
-D_HDFEOS5_THREADSAFE -Df2cFortran -I/usr/include/hdf5/serial'
CPP='gcc -E'
CPPFLAGS='-Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial'
CYGPATH_W='echo'
DEFS=''
DEPDIR='.deps'
DLLTOOL='false'
DSYMUTIL=''
DUMPBIN=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/bin/grep -E'
EXEEXT=''
F2CFORTRAN_32PTR_CONDITIONAL_FALSE=''
F2CFORTRAN_32PTR_CONDITIONAL_TRUE=''
F2CFORTRAN_90_CONDITIONAL_FALSE=''
F2CFORTRAN_90_CONDITIONAL_TRUE=''
F2CFORTRAN_CONDITIONAL_FALSE=''
F2CFORTRAN_CONDITIONAL_TRUE=''
F77='gfortran'
FC='gfortran'
FCFLAGS='-g -O2 -fstack-protector-strong'
FFLAGS='-g -O2 -fstack-protector-strong'
FGREP='/bin/grep -F'
GREP='/bin/grep'
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_INCLUDE_CONDITIONAL_FALSE=''
INSTALL_INCLUDE_CONDITIONAL_TRUE=''
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
LD='/usr/bin/ld -m elf_x86_64'
LDFLAGS='-Wl,-z,relro -lpthread -L/usr/lib/x86_64-linux-gnu/hdf5/serial'
LIBOBJS=''
LIBS='-lhdf5 -lz -lm '
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LIPO=''
LN_S='ln -s'
LTLIBOBJS=''
MAINT='#'
MAINTAINER_MODE_FALSE=''
MAINTAINER_MODE_TRUE='#'
MAKEINFO='${SHELL}
/home/lamby/temp/cdt.20160130001950.M1VKk1na8D/hdf-eos5-5.1.15.dfsg.1/config/missing
makeinfo'
MANIFEST_TOOL=':'
MKDIR_P='/bin/mkdir -p'
NM='/usr/bin/nm -B'
NMEDIT=''
OBJDUMP='objdump'
OBJEXT='o'
OTOOL64=''
OTOOL=''
PACKAGE='hdf-eos5'
PACKAGE_BUGREPORT='null@bogus.email'
PACKAGE_NAME='hdf-eos5'
PACKAGE_STRING='hdf-eos5 1.8'
PACKAGE_TARNAME='hdf-eos5'
PACKAGE_URL=''
PACKAGE_VERSION='1.8'
PATH_SEPARATOR=':'
RANLIB='ranlib'
SED='/bin/sed'
SET_MAKE=''
SHELL='/bin/bash'
STRIP='strip'
SZIP_ENCODER_CONDITIONAL_FALSE=''
SZIP_ENCODER_CONDITIONAL_TRUE=''
TESTDRIVERS_CONDITIONAL_FALSE=''
TESTDRIVERS_CONDITIONAL_TRUE=''
THREADSAFE_CONDITIONAL_FALSE='#'
THREADSAFE_CONDITIONAL_TRUE=''
VERSION='1.8'
ac_ct_AR='ar'
ac_ct_CC='gcc'
ac_ct_DUMPBIN=''
ac_ct_F77=''
ac_ct_FC='gfortran'
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE=''
am__fastdepCC_FALSE=''
am__fastdepCC_TRUE='#'
am__include='include'
am__isrc=''
am__leading_dot='.'
am__nodep=''
am__quote=''
am__tar='$${TAR-tar} chof - "$$tardir"'
am__untar='$${TAR-tar} xf -'
bindir='${exec_prefix}/bin'
build='x86_64-pc-linux-gnu'
build_alias='x86_64-linux-gnu'
build_cpu='x86_64'
build_os='linux-gnu'
build_vendor='pc'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='NONE'
host='x86_64-pc-linux-gnu'
host_alias=''
host_cpu='x86_64'
host_os='linux-gnu'
host_vendor='pc'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${prefix}/share/info'
install_sh='${SHELL}
/home/lamby/temp/cdt.20160130001950.M1VKk1na8D/hdf-eos5-5.1.15.dfsg.1/config/install-sh'
libdir='${prefix}/lib/x86_64-linux-gnu'
libexecdir='${prefix}/lib/x86_64-linux-gnu'
localedir='${datarootdir}/locale'
localstatedir='/var'
mandir='${prefix}/share/man'
mkdir_p='$(MKDIR_P)'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/usr'
program_transform_name='s,x,x,'
psdir='${docdir}'
runstatedir='${localstatedir}/run'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='/etc'
target_alias=''
## ----------- ##
## confdefs.h. ##
## ----------- ##
/* confdefs.h */
#define PACKAGE_NAME "hdf-eos5"
#define PACKAGE_TARNAME "hdf-eos5"
#define PACKAGE_VERSION "1.8"
#define PACKAGE_STRING "hdf-eos5 1.8"
#define PACKAGE_BUGREPORT "null@bogus.email"
#define PACKAGE_URL ""
#define PACKAGE "hdf-eos5"
#define VERSION "1.8"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_LIBM 1
#define HAVE_ZLIB_H 1
#define HAVE_LIBZ 1
#define SIZEOF_INTP 8
#define HAVE_HDF5_H 1
#define HAVE_LIBHDF5 1
#define _HDFEOS5_THREADSAFE 1
#define HAVE_HDF5_SZIP_DECODER 1
#define H5_HAVE_FILTER_SZIP 1
#define HAVE_HDF5_SZIP_ENCODER 1
configure: exit 1
dh_auto_configure: ./configure --build=x86_64-linux-gnu --prefix=/usr
--includedir=${prefix}/include --mandir=${prefix}/share/man
--infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var
--disable-silent-rules --libdir=${prefix}/lib/x86_64-linux-gnu
--libexecdir=${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode
--disable-dependency-tracking --enable-shared --with-pic
--with-hdf5=/usr/include/hdf5/serial,/usr/lib/x86_64-linux-gnu/hdf5/serial
returned exit code 1
debian/rules:25: recipe for target 'override_dh_auto_configure' failed
make[1]: *** [override_dh_auto_configure] Error 255
make[1]: Leaving directory
'/home/lamby/temp/cdt.20160130001950.M1VKk1na8D/hdf-eos5-5.1.15.dfsg.1'
debian/rules:8: recipe for target 'build' failed
make: *** [build] Error 2
[..]
The full build log is attached.
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` la...@debian.org / chris-lamb.co.uk
`-
hdf-eos5.5.1.15.dfsg.1-4.unstable.amd64.log.txt.gz
Description: Binary data
