Your message dated Fri, 29 Jan 2016 15:49:41 +0000 with message-id <e1apbir-0005zz...@franck.debian.org> and subject line Bug#813086: fixed in beast-mcmc 1.8.2-1 has caused the Debian Bug report #813086, regarding beast-mcmc: fails to upgrade from 'testing' - trying to overwrite /usr/bin/tracer to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 813086: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=813086 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: beast-mcmc Version: 1.8.2~754b844-2 Severity: serious User: debian...@lists.debian.org Usertags: piuparts Hi, during a test with piuparts I noticed your package fails to upgrade from 'testing'. It installed fine in 'testing', then the upgrade to 'sid' fails because it tries to overwrite other packages files without declaring a Breaks+Replaces relation. See policy 7.6 at https://www.debian.org/doc/debian-policy/ch-relationships.html#s-replaces >From the attached log (scroll to the bottom...): Selecting previously unselected package beast-mcmc. Preparing to unpack .../beast-mcmc_1.8.2~754b844-2_all.deb ... Unpacking beast-mcmc (1.8.2~754b844-2) ... dpkg: error processing archive /var/cache/apt/archives/beast-mcmc_1.8.2~754b844-2_all.deb (--unpack): trying to overwrite '/usr/bin/tracer', which is also in package pvm-dev 3.4.5-12.6 dpkg-deb: error: subprocess paste was killed by signal (Broken pipe) cheers, Andreas
pvm-dev=3.4.5-12.6_beast-mcmc=1.8.2~754b844-2.log.gz
Description: application/gzip
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--- Begin Message ---Source: beast-mcmc Source-Version: 1.8.2-1 We believe that the bug you reported is fixed in the latest version of beast-mcmc, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 813...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated beast-mcmc package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Fri, 29 Jan 2016 16:03:31 +0100 Source: beast-mcmc Binary: beast-mcmc libnucleotidelikelihoodcore0 beast-mcmc-examples beast-mcmc-doc Architecture: source all amd64 Version: 1.8.2-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: beast-mcmc - Bayesian MCMC phylogenetic inference beast-mcmc-doc - Bayesian MCMC phylogenetic inference - documentation beast-mcmc-examples - Bayesian MCMC phylogenetic inference - example data libnucleotidelikelihoodcore0 - implementation of LikelihoodCore for nucleotides used by beast-mc Closes: 813086 Changes: beast-mcmc (1.8.2-1) unstable; urgency=medium . * Adapt d/watch to changed release names * Rename new binary tracer to beast-tracer Closes: #813086 Checksums-Sha1: 7530296834d6402dbc11fcb32b18bd9954d1d022 2558 beast-mcmc_1.8.2-1.dsc fc7a67e7816fa27fabd41da750693c6dc12b4317 34530540 beast-mcmc_1.8.2.orig.tar.xz 2b16545e5d2725a4665b7fcf0c87e9f98ad4da07 17236 beast-mcmc_1.8.2-1.debian.tar.xz 649bda47c728d5ee4d5e08d2e17392a77cede3da 1841946 beast-mcmc-doc_1.8.2-1_all.deb 7ecf2ee9dd7fd44299a13921af5e86c2728b01f9 1995354 beast-mcmc-examples_1.8.2-1_all.deb cc038e62e68cd9b283a91a4f9de270d198da944b 7008932 beast-mcmc_1.8.2-1_all.deb 70b06e59dde691c8324b0a92f4656d46e0873e44 2182 libnucleotidelikelihoodcore0-dbgsym_1.8.2-1_amd64.deb 61bd4776875694b3280348c85c65a9801a018299 8540 libnucleotidelikelihoodcore0_1.8.2-1_amd64.deb Checksums-Sha256: 8700ea42724c83415a58abc672b2166bb5b7052aba6c2607a58357f06e8786ed 2558 beast-mcmc_1.8.2-1.dsc e57a344328d47818beaff2c327a413511ce2a51c3ec512f19c38cfa8fbc61dde 34530540 beast-mcmc_1.8.2.orig.tar.xz b2d609ec507caa47346d732660a05a5c997b92c32136abdc46330c4a7da39f69 17236 beast-mcmc_1.8.2-1.debian.tar.xz 7bb52bbf3d72f4ecb4c84baaac3fad81429a5023ed56d7c1a5919ede38be175d 1841946 beast-mcmc-doc_1.8.2-1_all.deb 5759dd6c0844401426db0b683b4b007850f659d24eb8dc6147e9a213bf8125a1 1995354 beast-mcmc-examples_1.8.2-1_all.deb 340824966b70ae4436709de7959a213ec40c775d9038904c4ceb509c2138c7f7 7008932 beast-mcmc_1.8.2-1_all.deb 47606810bdb055cc7b7968a5f3aa4cd76dce41235d2af6c669256af07b0215b9 2182 libnucleotidelikelihoodcore0-dbgsym_1.8.2-1_amd64.deb f8cae68ac7a64c4793adf961f87dc8376de85fa652ab5aed8fc29cfcbfee4051 8540 libnucleotidelikelihoodcore0_1.8.2-1_amd64.deb Files: 14784964d9a37c6256fd7d2fbf7b11b9 2558 contrib/science optional beast-mcmc_1.8.2-1.dsc 0e0aefdb1f6df9ca5767a219edf04c14 34530540 contrib/science optional beast-mcmc_1.8.2.orig.tar.xz efe60bd28497705e75383fcd42e069dc 17236 contrib/science optional beast-mcmc_1.8.2-1.debian.tar.xz 25ebb317c734e5c300d4d605796e10ad 1841946 contrib/doc optional beast-mcmc-doc_1.8.2-1_all.deb 035a2696966ce3af6d0946ee67186df9 1995354 contrib/doc optional beast-mcmc-examples_1.8.2-1_all.deb 788d4469768f28905a32f88be6d332c6 7008932 contrib/science optional beast-mcmc_1.8.2-1_all.deb 9601be2920bca92bcc98ebd68132267f 2182 contrib/debug extra libnucleotidelikelihoodcore0-dbgsym_1.8.2-1_amd64.deb 1977f8e8f1036ae7a74a6afb8d9ba446 8540 contrib/libs optional libnucleotidelikelihoodcore0_1.8.2-1_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJWq4LoAAoJEFeKBJTRxkbRv5cQAI9Gio7Urw3/GGhiIaL2maCy HSUWeBMsF/aqvtU3twXlINxYCRjbfeq5yc046gN8Xj6QvZCNt55ma4TIB9e/zoIF FF+HmpoHuEPVu4VVIUhSd2DSSi2UQjSsDtm4HCTK/nN5HFoRlrkZlYXdUnSnps/l 5XFsO1ZKCaz248eS4UDp4xjVQ7ecPUqT0Q+1CgpcbvszrI3QiWOpXPFjayg2d5CZ FkKcUWF9ckE9AL6Gnjt6ZLBMXAiDfvxcrEw0MN45bSH6Eom6rcDI0PP3gokw8oD+ 9AzYojdFEDZwt5J0LY4EMA93yPrQnEJzxMeDAcsDqt7QbA9iEx62K72+s8eCEMNN 2aYoglhXMobajxxJr9p3mzQ2fuZQ+6kOvBts/Kdx5xkm8YywyH1vx82lSsCxq+vr 4BQgfls2Ew5oSjPYD9sDC0+HwcagYBw3VlMQf5Rqd1lFh3nvLUKcxhZqBqr4T1tl oelAWYa9UMvTo/CHMWEcrDVGPcekEcfAW6AMCEha0up9v80Za1Mcu5ONiRDxj/gz J1YLt6ng30fMnenL3duDyEUrZOa0gZbsafcJ9Z03rtavocmpQmjajJn4LT1C0MnP nIfOq1d5WmEnFNkmF6OXtEXLDN3l4OFf82TK7Qk0jxGypC6uKm0+z5RSqQtNSFMh OVflxAJMQMbVXmwx5381 =sAIY -----END PGP SIGNATURE-----
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