Your message dated Thu, 21 Jan 2016 19:06:09 +0000
with message-id <e1amkyb-0001dl...@franck.debian.org>
and subject line Bug#811229: fixed in blacs-mpi 1.1-33.1
has caused the Debian Bug report #811229,
regarding libblacs-mpich1: missing dependency on libblacs-mpich1
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
811229: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=811229
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:blacs-mpi
Version: 1.1-33
Severity: serious
Tags: sid stretch patch
According to
https://buildd.debian.org/status/fetch.php?pkg=blacs-mpi&arch=s390x&ver=1.1-33%2Bb1&stamp=1451066448
libblacs-mpich1_1.1-33+b1_s390x.deb
Depends: mpi-default-bin, libc6 (>= 2.4)
missing the dependency on the libmpich package; dh_shlibdeps also warns about
the missing symbols.
while libblacs-openmpi1
Depends: mpi-default-bin, libc6 (>= 2.4), libopenmpi1.6
This causes the petsc configure check to fail on mpich architectures:
Executing: mpicc -o /tmp/petsc-1o2k96/config.libraries/conftest
-Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat
-Werror=format-security -fPIC /tmp/petsc-1o2k96/config.libraries/conftest.o
-lscalapack-mpich -llapack -lblas -L/usr/lib/s390x-linux-gnu
-L/usr/lib/gcc/s390x-linux-gnu/5 -L/lib/s390x-linux-gnu -lmpichfort -lgfortran
-lm -lgfortran -lm -lm -L/usr/lib/s390x-linux-gnu
-L/usr/lib/gcc/s390x-linux-gnu/5 -L/usr/lib/s390x-linux-gnu
-L/lib/s390x-linux-gnu -L/usr/lib/s390x-linux-gnu -ldl -lmpich -lgcc_s -ldl
Possible ERROR while running linker: exit code 256
stderr:
//usr/lib/libblacs-mpich.so.1: undefined reference to `mpi_test_'
//usr/lib/libblacs-mpich.so.1: undefined reference to `mpi_testall_'
//usr/lib/libblacs-mpich.so.1: undefined reference to `mpi_initialized_'
//usr/lib/libblacs-mpich.so.1: undefined reference to `mpi_init_'
//usr/lib/libblacs-mpich.so.1: undefined reference to `mpi_op_create_'
//usr/lib/libblacs-mpich.so.1: undefined reference to `mpi_attr_get_'
collect2: error: ld returned 1 exit status
according to the build log, the dependent library is missing during the link
step:
mkdir -p tmp
set -e ;\
for i in blacs blacsF77init blacsCinit ; do \
cd tmp ;\
ar x ../LIB/${i}_MPI-LINUX-0.a ;\
mkdir -p tmp ;\
for j in $(find -name "*.C") ;\
do mv $j tmp/$(echo $j | sed 's,C$,o,g') ;\
done;\
cd .. ;\
gcc -shared -Wl,-soname=lib$i-mpich.so.1 -o lib$i-mpich.so.1.1 \
$(find tmp -name "*.o");\
ln -fs lib$i-mpich.so.1.1 lib$i-mpich.so.1 ;\
ln -fs lib$i-mpich.so.1 lib$i-mpich.so ;\
rm -f tmp/tmp/* ; rmdir tmp/tmp ; rm tmp/* ;\
done
* Link the lam and mpich based library against the mpi lib.
* Remove ppc64 from the mpich architectures.
diff -u blacs-mpi-1.1/debian/control blacs-mpi-1.1/debian/control
--- blacs-mpi-1.1/debian/control
+++ blacs-mpi-1.1/debian/control
@@ -36,7 +36,7 @@
Package: libblacs-mpich1
Section: libs
-Architecture: hppa m68k powerpcspe ppc64 s390x sparc64
+Architecture: hppa m68k powerpcspe s390x sparc64
Depends: mpi-default-bin, ${shlibs:Depends}, ${misc:Depends}
Breaks: libblacs-mpi1 (<< 1.1-31.2)
Replaces: blacs1-mpich, blacs1gf-mpich, blacs1-lam, blacs1gf-lam,
@@ -59,9 +59,9 @@
Package: libblacs-mpi-dev
Section: libdevel
-Architecture: alpha amd64 armel armhf arm64 hurd-i386 i386 kfreebsd-amd64 kfreebsd-i386 mips mipsel powerpc ppc64 ppc64el sparc mips64 mips64el hppa m68k powerpcspe ppc64 s390x sparc64
+Architecture: alpha amd64 armel armhf arm64 hurd-i386 i386 kfreebsd-amd64 kfreebsd-i386 mips mipsel powerpc ppc64 ppc64el sparc mips64 mips64el hppa m68k powerpcspe s390x sparc64
Depends: libblacs-openmpi1 (= ${binary:Version}) [alpha amd64 armel armhf arm64 hurd-i386 i386 kfreebsd-amd64 kfreebsd-i386 mips mipsel powerpc ppc64 ppc64el sparc mips64 mips64el],
- libblacs-mpich1 (= ${binary:Version}) [hppa m68k powerpcspe ppc64 s390x sparc64],
+ libblacs-mpich1 (= ${binary:Version}) [hppa m68k powerpcspe s390x sparc64],
mpi-default-dev, ${misc:Depends}
Replaces: blacs-mpi, blacs-mpich-dev, blacsgf-mpich-dev, blacs-lam-dev, blacsgf-lam-dev
Conflicts: blacs-mpi, blacs-mpich-dev, blacsgf-mpich-dev, blacs-lam-dev, blacsgf-lam-dev
@@ -82,7 +82,7 @@
Package: blacs-mpi-test
Section: math
-Architecture: alpha amd64 armel armhf arm64 hurd-i386 i386 kfreebsd-amd64 kfreebsd-i386 mips mipsel powerpc ppc64 ppc64el sparc mips64 mips64el hppa m68k powerpcspe ppc64 s390x sparc64
+Architecture: alpha amd64 armel armhf arm64 hurd-i386 i386 kfreebsd-amd64 kfreebsd-i386 mips mipsel powerpc ppc64 ppc64el sparc mips64 mips64el hppa m68k powerpcspe s390x sparc64
Depends: blacs-test-common, ${shlibs:Depends}, ${misc:Depends}
Replaces: blacs-mpich-test, blacsgf-mpich-test, blacs-lam-test, blacsgf-lam-test
Conflicts: blacs-mpich-test, blacsgf-mpich-test, blacs-lam-test, blacsgf-lam-test
diff -u blacs-mpi-1.1/debian/rules blacs-mpi-1.1/debian/rules
--- blacs-mpi-1.1/debian/rules
+++ blacs-mpi-1.1/debian/rules
@@ -12,7 +12,7 @@
# package. If there is a mismatch between the two, the package will FTBFS. This
# is on purpose, to avoid silent breakage. See #740620 for more details.
OPENMPI_ARCHS=alpha amd64 armel armhf arm64 hurd-i386 i386 kfreebsd-amd64 kfreebsd-i386 mips mipsel powerpc ppc64 ppc64el sparc mips64 mips64el
-MPICH_ARCHS=hppa m68k powerpcspe ppc64 s390x sparc64
+MPICH_ARCHS=hppa m68k powerpcspe s390x sparc64
build: build-$(ARCH_DEFAULT_MPI_IMPL)
@@ -98,7 +98,7 @@
done;\
cd .. ;\
gcc -shared -Wl,-soname=lib$$i-lam.so.1 -o lib$$i-lam.so.1.1 \
- $$(find tmp -name "*.o");\
+ $$(find tmp -name "*.o") -lmpi;\
ln -fs lib$$i-lam.so.1.1 lib$$i-lam.so.1 ;\
ln -fs lib$$i-lam.so.1 lib$$i-lam.so ;\
rm -f tmp/tmp/* ; rmdir tmp/tmp ; rm tmp/* ;\
@@ -139,7 +139,7 @@
done;\
cd .. ;\
gcc -shared -Wl,-soname=lib$$i-mpich.so.1 -o lib$$i-mpich.so.1.1 \
- $$(find tmp -name "*.o");\
+ $$(find tmp -name "*.o") -lmpi;\
ln -fs lib$$i-mpich.so.1.1 lib$$i-mpich.so.1 ;\
ln -fs lib$$i-mpich.so.1 lib$$i-mpich.so ;\
rm -f tmp/tmp/* ; rmdir tmp/tmp ; rm tmp/* ;\
--- End Message ---
--- Begin Message ---
Source: blacs-mpi
Source-Version: 1.1-33.1
We believe that the bug you reported is fixed in the latest version of
blacs-mpi, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 811...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Matthias Klose <d...@ubuntu.com> (supplier of updated blacs-mpi package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Mon, 18 Jan 2016 19:33:39 +0100
Source: blacs-mpi
Binary: libblacs-openmpi1 libblacs-mpich1 libblacs-mpi-dev blacs-mpi-test
blacs-test-common
Architecture: source amd64 all
Version: 1.1-33.1
Distribution: unstable
Urgency: medium
Maintainer: Muammar El Khatib <muam...@debian.org>
Changed-By: Matthias Klose <d...@ubuntu.com>
Description:
blacs-mpi-test - Basic Linear Algebra Comm. Subprograms - Test files for MPI
blacs-test-common - Test data for BLACS testers
libblacs-mpi-dev - Basic Linear Algebra Comm. Subprograms - Dev. files for MPI
libblacs-mpich1 - Basic Linear Algebra Comm. Subprograms - Shared libs. for
MPICH
libblacs-openmpi1 - Basic Linear Algebra Comm. Subprograms - Shared libs. for
OpenMPI
Closes: 811229
Changes:
blacs-mpi (1.1-33.1) unstable; urgency=medium
.
* Non-maintainer upload.
* Link the mpich based library against the libmpich and libmpichfort.
Closes: #811229.
* Remove ppc64 from the list of mpich architectures.
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Files:
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blacs-mpi-test_1.1-33.1_amd64.deb
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libblacs-mpi-dev_1.1-33.1_amd64.deb
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