Bug#805835: marked as done (voxbo: Fails to build with GSL 2)

[Debian Bug Tracking System]

Your message dated Tue, 29 Dec 2015 19:46:57 +0000
with message-id <e1ae0et-0005ax...@franck.debian.org>
and subject line Bug#805835: fixed in voxbo 1.8.5~svn1246-2
has caused the Debian Bug report #805835,
regarding voxbo: Fails to build with GSL 2
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
805835: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=805835
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

--- Begin Message ---

Source: voxbo
Version: 1.8.5~svn1246-1.1
Severity: important
Tags: upstream

Dear Maintainer,

Your package fails to build with GSL 2:

 fitOneOverF.cpp: In function 'VB_Vector* curvefit(VB_Vector*, VB_Vector*, 
VB_Vector*, double, double, double, double, const char*, bool)':
 fitOneOverF.cpp:205:26: error: 'struct gsl_multifit_fdfsolver' has no member 
named 'J'
    gsl_multifit_covar (s->J, 0.0, covar);
                           ^
 fitOneOverF.cpp: In function 'VB_Vector* curvefit12(VB_Vector*, VB_Vector*, 
VB_Vector*, double, double, double, const char*, bool)':
 fitOneOverF.cpp:398:26: error: 'struct gsl_multifit_fdfsolver' has no member 
named 'J'
    gsl_multifit_covar (s->J, 0.0, covar);
                           ^

This needs to be fixed for the ongoing gsl transition (#804246).

The full build log is attached, as is a patch to update the build
dependencies for GSL 2 (changing libgsl0-dev to libgsl-dev).

Kind Regards,

Bas

I: using cowbuilder as pbuilder
dpkg-checkbuilddeps: Unmet build dependencies: libgsl-dev libqt4-dev libxi-dev
W: Unmet build-dependency in source
dpkg-buildpackage: source package voxbo
dpkg-buildpackage: source version 1.8.5~svn1246-1.2
dpkg-buildpackage: source distribution UNRELEASED
dpkg-buildpackage: source changed by Bas Couwenberg <sebas...@debian.org>
 dpkg-source --before-build voxbo-1.8.5~svn1246
dpkg-checkbuilddeps: Unmet build dependencies: libgsl-dev libqt4-dev libxi-dev
dpkg-buildpackage: warning: build dependencies/conflicts unsatisfied; aborting
dpkg-buildpackage: warning: (Use -d flag to override.)
dpkg-buildpackage: warning: this is currently a non-fatal warning with -S, but 
will probably become fatal in the future
 fakeroot debian/rules clean
dh clean
   dh_testdir
   dh_auto_clean
make[1]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246'
for dir in lib vbwidgets fileformats munge stats crunch stand_alone utils 
resample gdscript scheduler scripts qtglm vbview vbsequence qtvlsm client 
server dbutil ; do make -C $dir clean ; done
make[2]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/lib'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp test
make[2]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/lib'
make[2]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/vbwidgets'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp libvbwidgets.a
make[2]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/vbwidgets'
make[2]: Entering directory 
'/home/bas/tmp/debian/voxbo-1.8.5~svn1246/fileformats'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp dcmsplit dicominfo ffinfo vbrename analyzeinfo niftiinfo
make[2]: Leaving directory 
'/home/bas/tmp/debian/voxbo-1.8.5~svn1246/fileformats'
make[2]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/munge'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp tes2cub vb2cub vb2img vb2imgs vb2tes vb2vmp vbconv vbmunge vbcmp 
vbshift vbsmooth vbmaskmunge vecsplit vbinterpolate vbthresh vbprep vbbatch 
sumrfx calcperf cub2pngs setorigin fillmask vbhdr vbsim vbregion vborient vbi 
vbmerge4d vbvec2hdr vbse vbmaskinfo vboverlap vbimagemunge vbim vbfilter 
vbmaskcompare vbtool
make[2]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/munge'
make[2]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/stats'
rm -f vbvolregress vbmakeregress vbstatmap vbdumpstats glminfo vbperminfo vbxts 
vbtmap vbmakeresid vbfdr vbpermvec vbscoregen vbmap a.out *.o *.so *~ *.exe *.a 
core.[0-9]* *.hlp.h *.moc.h moc_*.cpp rsrc.cpp
make[2]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/stats'
make[2]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/crunch'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp vbmm2 vbmakeglm vbmakefilter 
make[2]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/crunch'
make[2]: Entering directory 
'/home/bas/tmp/debian/voxbo-1.8.5~svn1246/stand_alone'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp calcgs calcps sliceacq tesplit tesjoin makematkg makematk comptraces 
permstep vbregress vbpermmat
make[2]: Leaving directory 
'/home/bas/tmp/debian/voxbo-1.8.5~svn1246/stand_alone'
make[2]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/utils'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp vbfit vbcfx txt2num gcheck sortmvpm
make[2]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/utils'
make[2]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/resample'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp resample
make[2]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/resample'
make[2]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/gdscript'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp gds
make[2]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/gdscript'
make[2]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/scheduler'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp voxbo vbsrvd voxq vbq vq
make[2]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/scheduler'
make[2]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/scripts'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp newprep oldprep minprep makevlsm vbinstall spm8_coreg spm8_realign 
spm8_segment spm8_warp spm8_reslice dcmcrawl
make[2]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/scripts'
make[2]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/qtglm'
rm -rf a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp glm gdw vecview vbpermgen vbtcalc
make[2]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/qtglm'
make[2]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/vbview'
rm -rf a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp vbview2 vbri
make[2]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/vbview'
make[2]: Entering directory 
'/home/bas/tmp/debian/voxbo-1.8.5~svn1246/vbsequence'
rm -f moc_* *.o *.exe vbsequence submit_sequence print_dataset display_dataset
make[2]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/vbsequence'
make[2]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/qtvlsm'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp vbvlsm
make[2]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/qtvlsm'
make[2]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/client'
rm -rf a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp client dbtool dbfiles.h
make[2]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/client'
make[2]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/server'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp server
make[2]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/server'
make[2]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/dbutil'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp 
make[2]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/dbutil'
rm -f make_vars.txt
make[1]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246'
   debian/rules override_dh_clean
make[1]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246'
/usr/bin/make distclean
make[2]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246'
for dir in lib vbwidgets fileformats munge stats crunch stand_alone utils 
resample gdscript scheduler scripts qtglm vbview vbsequence qtvlsm client 
server dbutil ; do make -C $dir clean ; done
make[3]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/lib'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp test
make[3]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/lib'
make[3]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/vbwidgets'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp libvbwidgets.a
make[3]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/vbwidgets'
make[3]: Entering directory 
'/home/bas/tmp/debian/voxbo-1.8.5~svn1246/fileformats'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp dcmsplit dicominfo ffinfo vbrename analyzeinfo niftiinfo
make[3]: Leaving directory 
'/home/bas/tmp/debian/voxbo-1.8.5~svn1246/fileformats'
make[3]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/munge'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp tes2cub vb2cub vb2img vb2imgs vb2tes vb2vmp vbconv vbmunge vbcmp 
vbshift vbsmooth vbmaskmunge vecsplit vbinterpolate vbthresh vbprep vbbatch 
sumrfx calcperf cub2pngs setorigin fillmask vbhdr vbsim vbregion vborient vbi 
vbmerge4d vbvec2hdr vbse vbmaskinfo vboverlap vbimagemunge vbim vbfilter 
vbmaskcompare vbtool
make[3]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/munge'
make[3]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/stats'
rm -f vbvolregress vbmakeregress vbstatmap vbdumpstats glminfo vbperminfo vbxts 
vbtmap vbmakeresid vbfdr vbpermvec vbscoregen vbmap a.out *.o *.so *~ *.exe *.a 
core.[0-9]* *.hlp.h *.moc.h moc_*.cpp rsrc.cpp
make[3]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/stats'
make[3]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/crunch'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp vbmm2 vbmakeglm vbmakefilter 
make[3]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/crunch'
make[3]: Entering directory 
'/home/bas/tmp/debian/voxbo-1.8.5~svn1246/stand_alone'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp calcgs calcps sliceacq tesplit tesjoin makematkg makematk comptraces 
permstep vbregress vbpermmat
make[3]: Leaving directory 
'/home/bas/tmp/debian/voxbo-1.8.5~svn1246/stand_alone'
make[3]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/utils'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp vbfit vbcfx txt2num gcheck sortmvpm
make[3]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/utils'
make[3]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/resample'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp resample
make[3]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/resample'
make[3]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/gdscript'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp gds
make[3]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/gdscript'
make[3]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/scheduler'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp voxbo vbsrvd voxq vbq vq
make[3]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/scheduler'
make[3]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/scripts'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp newprep oldprep minprep makevlsm vbinstall spm8_coreg spm8_realign 
spm8_segment spm8_warp spm8_reslice dcmcrawl
make[3]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/scripts'
make[3]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/qtglm'
rm -rf a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp glm gdw vecview vbpermgen vbtcalc
make[3]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/qtglm'
make[3]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/vbview'
rm -rf a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp vbview2 vbri
make[3]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/vbview'
make[3]: Entering directory 
'/home/bas/tmp/debian/voxbo-1.8.5~svn1246/vbsequence'
rm -f moc_* *.o *.exe vbsequence submit_sequence print_dataset display_dataset
make[3]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/vbsequence'
make[3]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/qtvlsm'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp vbvlsm
make[3]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/qtvlsm'
make[3]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/client'
rm -rf a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp client dbtool dbfiles.h
make[3]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/client'
make[3]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/server'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp server
make[3]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/server'
make[3]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/dbutil'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp 
make[3]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/dbutil'
rm -f make_vars.txt
make[2]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246'
dh_clean
make[1]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246'
 dpkg-source -b voxbo-1.8.5~svn1246
dpkg-source: info: using source format `3.0 (quilt)'
dpkg-source: info: building voxbo using existing 
./voxbo_1.8.5~svn1246.orig.tar.gz
dpkg-source: info: building voxbo in voxbo_1.8.5~svn1246-1.2.debian.tar.xz
dpkg-source: info: building voxbo in voxbo_1.8.5~svn1246-1.2.dsc
 dpkg-genchanges -S >../voxbo_1.8.5~svn1246-1.2_source.changes
dpkg-genchanges: not including original source code in upload
 dpkg-source --after-build voxbo-1.8.5~svn1246
dpkg-buildpackage: binary and diff upload (original source NOT included)
 -> Copying COW directory
  forking: rm -rf /var/cache/pbuilder/build//cow.1151 
  forking: cp -al /var/cache/pbuilder/base-sid+rebuild.cow 
/var/cache/pbuilder/build//cow.1151 
I: removed stale ilistfile /var/cache/pbuilder/build//cow.1151/.ilist
  forking: chroot /var/cache/pbuilder/build//cow.1151 cowdancer-ilistcreate 
/.ilist find . -xdev -path ./home -prune -o \( \( -type l -o -type f \) -a 
-links +1 -print0 \) | xargs -0 stat --format '%d %i ' 
 -> Invoking pbuilder
  forking: pbuilder build --debbuildopts  --debbuildopts  --buildplace 
/var/cache/pbuilder/build//cow.1151 --buildresult /var/cache/pbuilder/result/ 
--debbuildopts  --no-targz --internal-chrootexec chroot 
/var/cache/pbuilder/build//cow.1151 cow-shell 
/home/bas/tmp/debian/voxbo_1.8.5~svn1246-1.2.dsc 
I: Running in no-targz mode
I: using fakeroot in build.
I: pbuilder: network access will be disabled during build
I: Current time: Sun Nov 22 22:54:49 CET 2015
I: pbuilder-time-stamp: 1448229289
I: copying local configuration
I: mounting /proc filesystem
I: mounting /run/shm filesystem
I: mounting /dev/pts filesystem
I: policy-rc.d already exists
I: Obtaining the cached apt archive contents
I: Installing the build-deps
W: no hooks of type D found -- ignoring
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-ma...@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by 
pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper (>= 7.0.50~), python, zlib1g-dev, libboost-dev, 
libboost-thread-dev, libgsl-dev, libpng-dev, libqt4-dev, libxi-dev, 
libxrender-dev, libfontconfig1-dev | libfontconfig-dev
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in 
'/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 12439 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring 
anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper (>= 7.0.50~); however:
  Package debhelper is not installed.
 pbuilder-satisfydepends-dummy depends on python; however:
  Package python is not installed.
 pbuilder-satisfydepends-dummy depends on zlib1g-dev; however:
  Package zlib1g-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libboost-dev; however:
  Package libboost-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libboost-thread-dev; however:
  Package libboost-thread-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libgsl-dev; however:
  Package libgsl-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libpng-dev; however:
  Package libpng-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libqt4-dev; however:
  Package libqt4-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libxi-dev; however:
  Package libxi-dev is not 
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version 
(0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version 
(0.invalid.0)
The following NEW packages will be installed:
  bsdmainutils{a} debhelper{a} dh-strip-nondeterminism{a} file{a} 
  fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} 
  gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} 
  libaudio2{a} libboost-atomic1.58-dev{a} libboost-atomic1.58.0{a} 
  libboost-chrono1.58-dev{a} libboost-chrono1.58.0{a} 
  libboost-date-time1.58-dev{a} libboost-date-time1.58.0{a} libboost-dev{a} 
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  libboost-system1.58-dev{a} libboost-system1.58.0{a} 
  libboost-thread-dev{a} libboost-thread1.58-dev{a} 
  libboost-thread1.58.0{a} libboost1.58-dev{a} libcroco3{a} libdbus-1-3{a} 
  libexpat1{a} libexpat1-dev{a} libffi6{a} 
  libfile-stripnondeterminism-perl{a} libfontconfig1{a} 
  libfontconfig1-dev{a} libfreetype6{a} libfreetype6-dev{a} libglib2.0-0{a} 
  libgsl-dev{a} libgsl2{a} libice6{a} libicu55{a} libjbig0{a} 
  libjpeg62-turbo{a} liblcms2-2{a} libmagic1{a} libmng1{a} libpipeline1{a} 
  libpng12-0{a} libpng12-dev{a} libpthread-stubs0-dev{a} 
  libpython-stdlib{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} 
  libqt4-dbus{a} libqt4-declarative{a} libqt4-designer{a} libqt4-dev{a} 
  libqt4-dev-bin{a} libqt4-help{a} libqt4-network{a} libqt4-qt3support{a} 
  libqt4-script{a} libqt4-scripttools{a} libqt4-sql{a} libqt4-svg{a} 
  libqt4-test{a} libqt4-xml{a} libqt4-xmlpatterns{a} libqtcore4{a} 
  libqtdbus4{a} libqtgui4{a} libsm6{a} libssl1.0.2{a} libtiff5{a} 
  libunistring0{a} libx11-6{a} libx11-data{a} libx11-dev{a} libxau-dev{a} 
  libxau6{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} 
  libxext-dev{a} libxext6{a} libxfixes-dev{a} libxfixes3{a} libxi-dev{a} 
  libxi6{a} libxml2{a} libxrender-dev{a} libxrender1{a} libxt6{a} man-db{a} 
  mime-support{a} pkg-config{a} po-debconf{a} python{a} python-minimal{a} 
  python2.7{a} python2.7-minimal{a} qdbus{a} qt4-linguist-tools{a} 
  qt4-qmake{a} qtchooser{a} qtcore4-l10n{a} ucf{a} x11-common{a} 
  x11proto-core-dev{a} x11proto-fixes-dev{a} x11proto-input-dev{a} 
  x11proto-kb-dev{a} x11proto-render-dev{a} x11proto-xext-dev{a} 
  xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  ca-certificates curl dbus libcups2 libglib2.0-data libmail-sendmail-perl 
  libqt4-opengl-dev libqt4-sql-ibase libqt4-sql-mysql libqt4-sql-odbc 
  libqt4-sql-psql libqt4-sql-sqlite libqt4-sql-sqlite2 libx11-doc lynx-cur 
  qt-at-spi shared-mime-info wget xdg-user-dirs xml-core 
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Reading package lists...
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The following extra packages will be installed:
  libfakeroot
The following NEW packages will be installed:
  fakeroot libfakeroot
debconf: delaying package configuration, since apt-utils is not installed
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update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot 
(fakeroot) in auto mode
I: Copying back the cached apt archive contents
I: Copying source file
I: copying [/home/bas/tmp/debian/voxbo_1.8.5~svn1246-1.2.dsc]
I: copying [/home/bas/tmp/debian/voxbo_1.8.5~svn1246.orig.tar.gz]
I: copying [/home/bas/tmp/debian/voxbo_1.8.5~svn1246-1.2.debian.tar.xz]
I: Extracting source
dpkg-source: warning: extracting unsigned source package 
(voxbo_1.8.5~svn1246-1.2.dsc)
dpkg-source: info: extracting voxbo in voxbo-1.8.5~svn1246
dpkg-source: info: unpacking voxbo_1.8.5~svn1246.orig.tar.gz
dpkg-source: info: unpacking voxbo_1.8.5~svn1246-1.2.debian.tar.xz
dpkg-source: info: applying no_qtimageformats_linking
dpkg-source: info: applying manpages
dpkg-source: info: applying fix-linking.patch
I: Building the package
W: no hooks of type A found -- ignoring
I: Running cd tmp/buildd/*/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin" 
dpkg-buildpackage -us -uc  -rfakeroot
dpkg-buildpackage: source package voxbo
dpkg-buildpackage: source version 1.8.5~svn1246-1.2
dpkg-buildpackage: source distribution UNRELEASED
dpkg-buildpackage: source changed by Bas Couwenberg <sebas...@debian.org>
 dpkg-source --before-build voxbo-1.8.5~svn1246
dpkg-buildpackage: host architecture amd64
 fakeroot debian/rules clean
dh clean
   dh_testdir
   dh_auto_clean
        make -j1 distclean
make[1]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246'
for dir in lib vbwidgets fileformats munge stats crunch stand_alone utils 
resample gdscript scheduler scripts qtglm vbview vbsequence qtvlsm client 
server dbutil ; do make -C $dir clean ; done
make[2]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/lib'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp test
make[2]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/lib'
make[2]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/vbwidgets'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp libvbwidgets.a
make[2]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/vbwidgets'
make[2]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/fileformats'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp dcmsplit dicominfo ffinfo vbrename analyzeinfo niftiinfo
make[2]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/fileformats'
make[2]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/munge'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp tes2cub vb2cub vb2img vb2imgs vb2tes vb2vmp vbconv vbmunge vbcmp 
vbshift vbsmooth vbmaskmunge vecsplit vbinterpolate vbthresh vbprep vbbatch 
sumrfx calcperf cub2pngs setorigin fillmask vbhdr vbsim vbregion vborient vbi 
vbmerge4d vbvec2hdr vbse vbmaskinfo vboverlap vbimagemunge vbim vbfilter 
vbmaskcompare vbtool
make[2]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/munge'
make[2]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/stats'
rm -f vbvolregress vbmakeregress vbstatmap vbdumpstats glminfo vbperminfo vbxts 
vbtmap vbmakeresid vbfdr vbpermvec vbscoregen vbmap a.out *.o *.so *~ *.exe *.a 
core.[0-9]* *.hlp.h *.moc.h moc_*.cpp rsrc.cpp
make[2]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/stats'
make[2]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/crunch'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp vbmm2 vbmakeglm vbmakefilter 
make[2]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/crunch'
make[2]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/stand_alone'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp calcgs calcps sliceacq tesplit tesjoin makematkg makematk comptraces 
permstep vbregress vbpermmat
make[2]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/stand_alone'
make[2]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/utils'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp vbfit vbcfx txt2num gcheck sortmvpm
make[2]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/utils'
make[2]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/resample'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp resample
make[2]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/resample'
make[2]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/gdscript'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp gds
make[2]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/gdscript'
make[2]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/scheduler'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp voxbo vbsrvd voxq vbq vq
make[2]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/scheduler'
make[2]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/scripts'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp newprep oldprep minprep makevlsm vbinstall spm8_coreg spm8_realign 
spm8_segment spm8_warp spm8_reslice dcmcrawl
make[2]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/scripts'
make[2]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/qtglm'
rm -rf a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp glm gdw vecview vbpermgen vbtcalc
make[2]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/qtglm'
make[2]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/vbview'
rm -rf a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp vbview2 vbri
make[2]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/vbview'
make[2]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/vbsequence'
rm -f moc_* *.o *.exe vbsequence submit_sequence print_dataset display_dataset
make[2]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/vbsequence'
make[2]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/qtvlsm'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp vbvlsm
make[2]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/qtvlsm'
make[2]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/client'
rm -rf a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp client dbtool dbfiles.h
make[2]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/client'
make[2]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/server'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp server
make[2]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/server'
make[2]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/dbutil'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp 
make[2]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/dbutil'
rm -f make_vars.txt
make[1]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246'
   debian/rules override_dh_clean
make[1]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246'
/usr/bin/make distclean
make[2]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246'
for dir in lib vbwidgets fileformats munge stats crunch stand_alone utils 
resample gdscript scheduler scripts qtglm vbview vbsequence qtvlsm client 
server dbutil ; do make -C $dir clean ; done
make[3]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/lib'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp test
make[3]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/lib'
make[3]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/vbwidgets'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp libvbwidgets.a
make[3]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/vbwidgets'
make[3]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/fileformats'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp dcmsplit dicominfo ffinfo vbrename analyzeinfo niftiinfo
make[3]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/fileformats'
make[3]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/munge'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp tes2cub vb2cub vb2img vb2imgs vb2tes vb2vmp vbconv vbmunge vbcmp 
vbshift vbsmooth vbmaskmunge vecsplit vbinterpolate vbthresh vbprep vbbatch 
sumrfx calcperf cub2pngs setorigin fillmask vbhdr vbsim vbregion vborient vbi 
vbmerge4d vbvec2hdr vbse vbmaskinfo vboverlap vbimagemunge vbim vbfilter 
vbmaskcompare vbtool
make[3]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/munge'
make[3]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/stats'
rm -f vbvolregress vbmakeregress vbstatmap vbdumpstats glminfo vbperminfo vbxts 
vbtmap vbmakeresid vbfdr vbpermvec vbscoregen vbmap a.out *.o *.so *~ *.exe *.a 
core.[0-9]* *.hlp.h *.moc.h moc_*.cpp rsrc.cpp
make[3]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/stats'
make[3]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/crunch'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp vbmm2 vbmakeglm vbmakefilter 
make[3]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/crunch'
make[3]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/stand_alone'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp calcgs calcps sliceacq tesplit tesjoin makematkg makematk comptraces 
permstep vbregress vbpermmat
make[3]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/stand_alone'
make[3]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/utils'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp vbfit vbcfx txt2num gcheck sortmvpm
make[3]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/utils'
make[3]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/resample'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp resample
make[3]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/resample'
make[3]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/gdscript'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp gds
make[3]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/gdscript'
make[3]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/scheduler'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp voxbo vbsrvd voxq vbq vq
make[3]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/scheduler'
make[3]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/scripts'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp newprep oldprep minprep makevlsm vbinstall spm8_coreg spm8_realign 
spm8_segment spm8_warp spm8_reslice dcmcrawl
make[3]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/scripts'
make[3]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/qtglm'
rm -rf a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp glm gdw vecview vbpermgen vbtcalc
make[3]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/qtglm'
make[3]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/vbview'
rm -rf a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp vbview2 vbri
make[3]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/vbview'
make[3]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/vbsequence'
rm -f moc_* *.o *.exe vbsequence submit_sequence print_dataset display_dataset
make[3]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/vbsequence'
make[3]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/qtvlsm'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp vbvlsm
make[3]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/qtvlsm'
make[3]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/client'
rm -rf a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp client dbtool dbfiles.h
make[3]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/client'
make[3]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/server'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp server
make[3]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/server'
make[3]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/dbutil'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp 
rsrc.cpp 
make[3]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/dbutil'
rm -f make_vars.txt
make[2]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246'
dh_clean
make[1]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246'
 dpkg-source -b voxbo-1.8.5~svn1246
dpkg-source: info: using source format '3.0 (quilt)'
dpkg-source: info: building voxbo using existing 
./voxbo_1.8.5~svn1246.orig.tar.gz
dpkg-source: info: building voxbo in voxbo_1.8.5~svn1246-1.2.debian.tar.xz
dpkg-source: info: building voxbo in voxbo_1.8.5~svn1246-1.2.dsc
 debian/rules build
dh build
   dh_testdir
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246'
./configure.py -s -p neurodebian
Configured NeuroDebian subpackage
Configured to build shared VoxBo libraries
make[1]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246'
   debian/rules override_dh_auto_build
make[1]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246'
/usr/bin/make QTDIR=/usr \
                QTBASEINCDIR=/usr/include/qt4 \
                MOC=/usr/bin/moc-qt4 \
                VB_SHARED=1
make[2]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246'
make -C lib
make[3]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/lib'
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c vbutil.cpp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c endian.cpp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c connect.cpp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c tokenlist.cpp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c vbreports.cpp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c genericexcep.cpp
g++ -shared -Wl,-soname,libvbutil.so -o libvbutil.so -Wl,--no-undefined 
-Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
vbutil.o endian.o connect.o tokenlist.o vbreports.o genericexcep.o -lc -lz 
-lboost_system
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c vbjobspec.cpp
vbjobspec.cpp: In member function 'void VBJobSpec::SetState(JobState)':
vbjobspec.cpp:693:8: warning: variable 'c' set but not used 
[-Wunused-but-set-variable]
   char c=' ';
        ^
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c vbprefs.cpp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c vbhost.cpp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c vbx.cpp
g++ -shared -Wl,-soname,libvbprefs.so -o libvbprefs.so -Wl,--no-undefined 
-Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-L. vbjobspec.o vbprefs.o vbhost.o vbx.o libvbutil.so -lc -lvbutil 
-lboost_system
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c vbio.cpp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c tes.cpp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c cube.cpp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c imageutils.cpp
imageutils.cpp: In member function 'int Resample::UseZ(Cube&, Cube&, double)':
imageutils.cpp:1039:19: warning: variable 'ourend' set but not used 
[-Wunused-but-set-variable]
   double ourstart,ourend,refstart,refend;
                   ^
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c mat.cpp
mat.cpp: In function 'int invert(const VBMatrix&, VBMatrix&)':
mat.cpp:544:13: warning: logical not is only applied to the left hand side of 
comparison [-Wlogical-not-parentheses]
   if (!src.m==src.n)
             ^
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c png.cpp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c vb_vector.cpp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c vbpreplib.cpp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c vbff.cpp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c ff_cub.cpp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c ff_tes.cpp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c ff_ref.cpp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c dicom.cpp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c ff_dicom3d.cpp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c ff_dicom4d.cpp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c analyze.cpp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c ff_img3d.cpp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c ff_img4d.cpp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c ff_imgdir.cpp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c nifti.cpp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c ff_nifti3d.cpp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c ff_nifti4d.cpp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c ff_roi.cpp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c ff_ge.cpp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c ff_vmp3d.cpp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c ff_mat.cpp
g++ -shared -Wl,-soname,libvbio.so -o libvbio.so -Wl,--no-undefined 
-Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-L. vbio.o tes.o cube.o imageutils.o mat.o png.o vb_vector.o vbpreplib.o vbff.o 
ff_cub.o ff_tes.o ff_ref.o ff_dicom3d.o ff_dicom4d.o dicom.o ff_img3d.o 
ff_img4d.o ff_imgdir.o ff_nifti3d.o ff_nifti4d.o nifti.o ff_roi.o analyze.o 
ff_ge.o ff_vmp3d.o ff_mat.o libvbprefs.so libvbutil.so -lc -lz -lgsl -lpng 
-lvbprefs -lvbutil -lboost_system
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c makestatcub.cpp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c glmutil.cpp
glmutil.cpp: In member function 'VB_Vector GLMInfo::getCovariate(int, int, int, 
int, int)':
glmutil.cpp:2163:7: warning: variable 'nbetas' set but not used 
[-Wunused-but-set-variable]
   int nbetas;
       ^
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c glm_stats.cpp
glm_stats.cpp: In member function 'int GLMInfo::calc_phase_cube()':
glm_stats.cpp:623:10: warning: variable 't' set but not used 
[-Wunused-but-set-variable]
   double t,weight,b1,b2;
          ^
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c statthreshold.cpp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c regress1.cpp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c trialavg.cpp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -fPIC -c stats.cpp
g++ -shared -Wl,-soname,libvbglm.so -o libvbglm.so -Wl,--no-undefined 
-Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-L. makestatcub.o glmutil.o glm_stats.o statthreshold.o regress1.o trialavg.o 
stats.o libvbio.so libvbutil.so libvbprefs.so -lc -lgsl -lvbio -lvbutil 
-lvbprefs -lboost_system
make[3]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/lib'
make -C fileformats
make[3]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/fileformats'
python ../lib/vbrc.py dcmsplit.hlp.h -myhelp dcmsplit.hlp
vbrc.py: processing -myhelp from dcmsplit.hlp
g++ dcmsplit.cpp -o dcmsplit -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed 
-L/usr/local/lib -L../lib -lvbio -lvbutil -lvbprefs -lz -lpng -lgsl -lgslcblas 
-lboost_system -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib
g++ dicominfo.cpp -o dicominfo -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed 
-L/usr/local/lib -L../lib -lvbio -lvbutil -lvbprefs -lz -lpng -lgsl -lgslcblas 
-lboost_system -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib
g++ ffinfo.cpp -ldl -o ffinfo -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed 
-L/usr/local/lib -L../lib -lvbio -lvbutil -lvbprefs -lz -lpng -lgsl -lgslcblas 
-lboost_system -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib
python ../lib/vbrc.py vbrename.hlp.h -myhelp vbrename.hlp
vbrc.py: processing -myhelp from vbrename.hlp
g++ vbrename.cpp -o vbrename -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed 
-L/usr/local/lib -L../lib -lvbio -lvbutil -lvbprefs -lz -lpng -lgsl -lgslcblas 
-lboost_system -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib
g++ analyzeinfo.cpp -o analyzeinfo -Wl,--no-undefined 
-Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-as-needed -L/usr/local/lib -L../lib -lvbio -lvbutil -lvbprefs -lz 
-lpng -lgsl -lgslcblas -lboost_system -Wall -Wall -DLINUX -I/usr/local/include 
-I../lib -DLINUX -I/usr/local/include -I../lib
ln -sf ./analyzeinfo niftiinfo
make[3]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/fileformats'
make -C munge
make[3]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/munge'
python ../lib/vbrc.py tes2cub.hlp.h -myhelp tes2cub.hlp
vbrc.py: processing -myhelp from tes2cub.hlp
g++ -o tes2cub tes2cub.cpp -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed 
-L/usr/local/lib -L../lib  -lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -ldl 
-lgsl -lgslcblas -lm -lboost_system -Wall -Wall -DLINUX -I/usr/local/include 
-I../lib -DLINUX -I/usr/local/include -I../lib
python ../lib/vbrc.py vb2cub.hlp.h -myhelp vb2cub.hlp
vbrc.py: processing -myhelp from vb2cub.hlp
g++ -o vb2cub vb2cub.cpp -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed 
-L/usr/local/lib -L../lib  -lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -ldl 
-lgsl -lgslcblas -lm -lboost_system -Wall -Wall -DLINUX -I/usr/local/include 
-I../lib -DLINUX -I/usr/local/include -I../lib
python ../lib/vbrc.py vb2img.hlp.h -myhelp vb2img.hlp
vbrc.py: processing -myhelp from vb2img.hlp
g++ -o vb2img vb2img.cpp -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed 
-L/usr/local/lib -L../lib  -lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -ldl 
-lgsl -lgslcblas -lm -lboost_system -Wall -Wall -DLINUX -I/usr/local/include 
-I../lib -DLINUX -I/usr/local/include -I../lib
python ../lib/vbrc.py vb2imgs.hlp.h -myhelp vb2imgs.hlp
vbrc.py: processing -myhelp from vb2imgs.hlp
g++ -o vb2imgs vb2imgs.cpp -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed 
-L/usr/local/lib -L../lib  -lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -ldl 
-lgsl -lgslcblas -lm -lboost_system -Wall -Wall -DLINUX -I/usr/local/include 
-I../lib -DLINUX -I/usr/local/include -I../lib
python ../lib/vbrc.py vb2tes.hlp.h -myhelp vb2tes.hlp
vbrc.py: processing -myhelp from vb2tes.hlp
g++ -o vb2tes vb2tes.cpp -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed 
-L/usr/local/lib -L../lib  -lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -ldl 
-lgsl -lgslcblas -lm -lboost_system -Wall -Wall -DLINUX -I/usr/local/include 
-I../lib -DLINUX -I/usr/local/include -I../lib
python ../lib/vbrc.py vb2vmp.hlp.h -myhelp vb2vmp.hlp
vbrc.py: processing -myhelp from vb2vmp.hlp
g++ -o vb2vmp vb2vmp.cpp -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed 
-L/usr/local/lib -L../lib  -lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -ldl 
-lgsl -lgslcblas -lm -lboost_system -Wall -Wall -DLINUX -I/usr/local/include 
-I../lib -DLINUX -I/usr/local/include -I../lib
python ../lib/vbrc.py vbconv.hlp.h -myhelp vbconv.hlp
vbrc.py: processing -myhelp from vbconv.hlp
g++ -o vbconv vbconv.cpp -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed 
-L/usr/local/lib -L../lib  -lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -ldl 
-lgsl -lgslcblas -lm -lboost_system -Wall -Wall -DLINUX -I/usr/local/include 
-I../lib -DLINUX -I/usr/local/include -I../lib
python ../lib/vbrc.py vbmunge.hlp.h -myhelp vbmunge.hlp
vbrc.py: processing -myhelp from vbmunge.hlp
g++ -o vbmunge vbmunge.cpp -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed 
-L/usr/local/lib -L../lib  -lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -ldl 
-lgsl -lgslcblas -lm -lboost_system -Wall -Wall -DLINUX -I/usr/local/include 
-I../lib -DLINUX -I/usr/local/include -I../lib
python ../lib/vbrc.py vbcmp.hlp.h -myhelp vbcmp.hlp
vbrc.py: processing -myhelp from vbcmp.hlp
g++ -o vbcmp vbcmp.cpp -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed 
-L/usr/local/lib -L../lib  -lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -ldl 
-lgsl -lgslcblas -lm -lboost_system -Wall -Wall -DLINUX -I/usr/local/include 
-I../lib -DLINUX -I/usr/local/include -I../lib
python ../lib/vbrc.py vbshift.hlp.h -myhelp vbshift.hlp
vbrc.py: processing -myhelp from vbshift.hlp
g++ -o vbshift vbshift.cpp -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed 
-L/usr/local/lib -L../lib  -lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -ldl 
-lgsl -lgslcblas -lm -lboost_system -Wall -Wall -DLINUX -I/usr/local/include 
-I../lib -DLINUX -I/usr/local/include -I../lib
python ../lib/vbrc.py vbsmooth.hlp.h -myhelp vbsmooth.hlp
vbrc.py: processing -myhelp from vbsmooth.hlp
g++ -o vbsmooth vbsmooth.cpp -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed 
-L/usr/local/lib -L../lib  -lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -ldl 
-lgsl -lgslcblas -lm -lboost_system -Wall -Wall -DLINUX -I/usr/local/include 
-I../lib -DLINUX -I/usr/local/include -I../lib
python ../lib/vbrc.py vbmaskmunge.hlp.h -myhelp vbmaskmunge.hlp
vbrc.py: processing -myhelp from vbmaskmunge.hlp
g++ -o vbmaskmunge vbmaskmunge.cpp -Wl,--no-undefined 
-Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-as-needed -L/usr/local/lib -L../lib  -lvbglm -lvbprefs -lvbio -lvbutil 
-lz -lpng -ldl -lgsl -lgslcblas -lm -lboost_system -Wall -Wall -DLINUX 
-I/usr/local/include -I../lib -DLINUX -I/usr/local/include -I../lib
python ../lib/vbrc.py vecsplit.hlp.h -myhelp vecsplit.hlp
vbrc.py: processing -myhelp from vecsplit.hlp
g++ -o vecsplit vecsplit.cpp -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed 
-L/usr/local/lib -L../lib  -lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -ldl 
-lgsl -lgslcblas -lm -lboost_system -Wall -Wall -DLINUX -I/usr/local/include 
-I../lib -DLINUX -I/usr/local/include -I../lib
python ../lib/vbrc.py vbinterpolate.hlp.h -myhelp vbinterpolate.hlp
vbrc.py: processing -myhelp from vbinterpolate.hlp
g++ -o vbinterpolate vbinterpolate.cpp -Wl,--no-undefined 
-Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-as-needed -L/usr/local/lib -L../lib  -lvbglm -lvbprefs -lvbio -lvbutil 
-lz -lpng -ldl -lgsl -lgslcblas -lm -lboost_system -Wall -Wall -DLINUX 
-I/usr/local/include -I../lib -DLINUX -I/usr/local/include -I../lib
python ../lib/vbrc.py vbthresh.hlp.h -myhelp vbthresh.hlp
vbrc.py: processing -myhelp from vbthresh.hlp
g++ -o vbthresh vbthresh.cpp -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed 
-L/usr/local/lib -L../lib  -lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -ldl 
-lgsl -lgslcblas -lm -lboost_system -Wall -Wall -DLINUX -I/usr/local/include 
-I../lib -DLINUX -I/usr/local/include -I../lib
python ../lib/vbrc.py cub2pngs.hlp.h -myhelp cub2pngs.hlp
vbrc.py: processing -myhelp from cub2pngs.hlp
g++ -o cub2pngs cub2pngs.cpp -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed 
-L/usr/local/lib -L../lib  -lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -ldl 
-lgsl -lgslcblas -lm -lboost_system -lpng -lz -Wall -Wall -DLINUX 
-I/usr/local/include -I../lib -DLINUX -I/usr/local/include -I../lib
python ../lib/vbrc.py setorigin.hlp.h -myhelp setorigin.hlp
vbrc.py: processing -myhelp from setorigin.hlp
g++ -o setorigin setorigin.cpp -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed 
-L/usr/local/lib -L../lib  -lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -ldl 
-lgsl -lgslcblas -lm -lboost_system -Wall -Wall -DLINUX -I/usr/local/include 
-I../lib -DLINUX -I/usr/local/include -I../lib
python ../lib/vbrc.py fillmask.hlp.h -myhelp fillmask.hlp
vbrc.py: processing -myhelp from fillmask.hlp
g++ -o fillmask fillmask.cpp -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed 
-L/usr/local/lib -L../lib  -lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -ldl 
-lgsl -lgslcblas -lm -lboost_system -Wall -Wall -DLINUX -I/usr/local/include 
-I../lib -DLINUX -I/usr/local/include -I../lib
python ../lib/vbrc.py vbhdr.hlp.h -myhelp vbhdr.hlp
vbrc.py: processing -myhelp from vbhdr.hlp
g++ -o vbhdr vbhdr.cpp -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed 
-L/usr/local/lib -L../lib  -lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -ldl 
-lgsl -lgslcblas -lm -lboost_system -Wall -Wall -DLINUX -I/usr/local/include 
-I../lib -DLINUX -I/usr/local/include -I../lib
python ../lib/vbrc.py vbsim.hlp.h -myhelp vbsim.hlp
vbrc.py: processing -myhelp from vbsim.hlp
g++ -o vbsim vbsim.cpp -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed 
-L/usr/local/lib -L../lib  -lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -ldl 
-lgsl -lgslcblas -lm -lboost_system -Wall -Wall -DLINUX -I/usr/local/include 
-I../lib -DLINUX -I/usr/local/include -I../lib
python ../lib/vbrc.py vbregion.hlp.h -myhelp vbregion.hlp
vbrc.py: processing -myhelp from vbregion.hlp
g++ -o vbregion vbregion.cpp -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed 
-L/usr/local/lib -L../lib  -lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -ldl 
-lgsl -lgslcblas -lm -lboost_system -Wall -Wall -DLINUX -I/usr/local/include 
-I../lib -DLINUX -I/usr/local/include -I../lib
python ../lib/vbrc.py vborient.hlp.h -myhelp vborient.hlp
vbrc.py: processing -myhelp from vborient.hlp
g++ -o vborient vborient.cpp -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed 
-L/usr/local/lib -L../lib  -lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -ldl 
-lgsl -lgslcblas -lm -lboost_system -Wall -Wall -DLINUX -I/usr/local/include 
-I../lib -DLINUX -I/usr/local/include -I../lib
python ../lib/vbrc.py vbi.hlp.h -myhelp vbi.hlp
vbrc.py: processing -myhelp from vbi.hlp
g++ -o vbi vbi.cpp -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed 
-L/usr/local/lib -L../lib  -lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -ldl 
-lgsl -lgslcblas -lm -lboost_system -Wall -Wall -DLINUX -I/usr/local/include 
-I../lib -DLINUX -I/usr/local/include -I../lib
python ../lib/vbrc.py vbmerge4d.hlp.h -myhelp vbmerge4d.hlp
vbrc.py: processing -myhelp from vbmerge4d.hlp
g++ -o vbmerge4d vbmerge4d.cpp -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed 
-L/usr/local/lib -L../lib  -lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -ldl 
-lgsl -lgslcblas -lm -lboost_system -Wall -Wall -DLINUX -I/usr/local/include 
-I../lib -DLINUX -I/usr/local/include -I../lib
python ../lib/vbrc.py vbvec2hdr.hlp.h -myhelp vbvec2hdr.hlp
vbrc.py: processing -myhelp from vbvec2hdr.hlp
g++ -o vbvec2hdr vbvec2hdr.cpp -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed 
-L/usr/local/lib -L../lib  -lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -ldl 
-lgsl -lgslcblas -lm -lboost_system -Wall -Wall -DLINUX -I/usr/local/include 
-I../lib -DLINUX -I/usr/local/include -I../lib
python ../lib/vbrc.py vbse.hlp.h -myhelp vbse.hlp
vbrc.py: processing -myhelp from vbse.hlp
g++ -o vbse vbse.cpp -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed 
-L/usr/local/lib -L../lib  -lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -ldl 
-lgsl -lgslcblas -lm -lboost_system -Wall -Wall -DLINUX -I/usr/local/include 
-I../lib -DLINUX -I/usr/local/include -I../lib
python ../lib/vbrc.py vbmaskinfo.hlp.h -myhelp vbmaskinfo.hlp
vbrc.py: processing -myhelp from vbmaskinfo.hlp
g++ -o vbmaskinfo vbmaskinfo.cpp -Wl,--no-undefined 
-Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-as-needed -L/usr/local/lib -L../lib  -lvbglm -lvbprefs -lvbio -lvbutil 
-lz -lpng -ldl -lgsl -lgslcblas -lm -lboost_system -Wall -Wall -DLINUX 
-I/usr/local/include -I../lib -DLINUX -I/usr/local/include -I../lib
python ../lib/vbrc.py vboverlap.hlp.h -myhelp vboverlap.hlp
vbrc.py: processing -myhelp from vboverlap.hlp
g++ -o vboverlap vboverlap.cpp -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed 
-L/usr/local/lib -L../lib  -lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -ldl 
-lgsl -lgslcblas -lm -lboost_system -Wall -Wall -DLINUX -I/usr/local/include 
-I../lib -DLINUX -I/usr/local/include -I../lib
python ../lib/vbrc.py vbimagemunge.hlp.h -myhelp vbimagemunge.hlp
vbrc.py: processing -myhelp from vbimagemunge.hlp
g++ -o vbimagemunge vbimagemunge.cpp -Wl,--no-undefined 
-Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-as-needed -L/usr/local/lib -L../lib  -lvbglm -lvbprefs -lvbio -lvbutil 
-lz -lpng -ldl -lgsl -lgslcblas -lm -lboost_system -Wall -Wall -DLINUX 
-I/usr/local/include -I../lib -DLINUX -I/usr/local/include -I../lib
python ../lib/vbrc.py vbim.hlp.h -myhelp vbim.hlp -myhelp_examples 
vbim_examples.hlp
vbrc.py: processing -myhelp from vbim.hlp
vbrc.py: processing -myhelp_examples from vbim_examples.hlp
g++ -o vbim vbim.cpp -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed 
-L/usr/local/lib -L../lib  -lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -ldl 
-lgsl -lgslcblas -lm -lboost_system -Wall -Wall -DLINUX -I/usr/local/include 
-I../lib -DLINUX -I/usr/local/include -I../lib
python ../lib/vbrc.py vbfilter.hlp.h -myhelp vbfilter.hlp
vbrc.py: processing -myhelp from vbfilter.hlp
g++ -o vbfilter vbfilter.cpp -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed 
-L/usr/local/lib -L../lib  -lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -ldl 
-lgsl -lgslcblas -lm -lboost_system -Wall -Wall -DLINUX -I/usr/local/include 
-I../lib -DLINUX -I/usr/local/include -I../lib
python ../lib/vbrc.py vbmaskcompare.hlp.h -myhelp vbmaskcompare.hlp
vbrc.py: processing -myhelp from vbmaskcompare.hlp
g++ -o vbmaskcompare vbmaskcompare.cpp -Wl,--no-undefined 
-Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-as-needed -L/usr/local/lib -L../lib  -lvbglm -lvbprefs -lvbio -lvbutil 
-lz -lpng -ldl -lgsl -lgslcblas -lm -lboost_system -Wall -Wall -DLINUX 
-I/usr/local/include -I../lib -DLINUX -I/usr/local/include -I../lib
python ../lib/vbrc.py vbtool.hlp.h -myhelp vbtool.hlp -contrasthelp 
contrast.hlp -priorityhelp priority.hlp
vbrc.py: processing -myhelp from vbtool.hlp
vbrc.py: processing -contrasthelp from contrast.hlp
vbrc.py: processing -priorityhelp from priority.hlp
g++ -o vbtool vbtool.cpp -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed 
-L/usr/local/lib -L../lib  -lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -ldl 
-lgsl -lgslcblas -lm -lboost_system -Wall -Wall -DLINUX -I/usr/local/include 
-I../lib -DLINUX -I/usr/local/include -I../lib
make[3]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/munge'
make -C stats
make[3]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/stats'
python ../lib/vbrc.py vbvolregress.hlp.h -myhelp vbvolregress.hlp
vbrc.py: processing -myhelp from vbvolregress.hlp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -o vbvolregress vbvolregress.cpp -lvbglm 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-undefined 
-Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed -L/usr/local/lib -L../lib -lm 
-lvbprefs -lvbglm -lvbio -lvbutil -lz -lpng -ldl -lgsl -lgslcblas -lm 
-lboost_system
python ../lib/vbrc.py vbmakeregress.hlp.h -myhelp vbmakeregress.hlp
vbrc.py: processing -myhelp from vbmakeregress.hlp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -o vbmakeregress vbmakeregress.cpp -lvbglm 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-undefined 
-Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed -L/usr/local/lib -L../lib -lm 
-lvbprefs -lvbglm -lvbio -lvbutil -lz -lpng -ldl -lgsl -lgslcblas -lm 
-lboost_system
python ../lib/vbrc.py vbstatmap.hlp.h -myhelp vbstatmap.hlp
vbrc.py: processing -myhelp from vbstatmap.hlp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -o vbstatmap vbstatmap.cpp -lvbglm 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-undefined 
-Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed -L/usr/local/lib -L../lib -lm 
-lvbprefs -lvbglm -lvbio -lvbutil -lz -lpng -ldl -lgsl -lgslcblas -lm 
-lboost_system
python ../lib/vbrc.py vbdumpstats.hlp.h -myhelp vbdumpstats.hlp
vbrc.py: processing -myhelp from vbdumpstats.hlp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -o vbdumpstats vbdumpstats.cpp -lvbglm 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-undefined 
-Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed -L/usr/local/lib -L../lib -lm 
-lvbprefs -lvbglm -lvbio -lvbutil -lz -lpng -ldl -lgsl -lgslcblas -lm 
-lboost_system
python ../lib/vbrc.py glminfo.hlp.h -myhelp glminfo.hlp
vbrc.py: processing -myhelp from glminfo.hlp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -o glminfo glminfo.cpp -lvbglm -Wl,--no-undefined 
-Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-as-needed -L/usr/local/lib -L../lib -lm -lvbprefs -lvbglm -lvbio 
-lvbutil -lz -lpng -ldl -lgsl -lgslcblas -lm -lboost_system
python ../lib/vbrc.py vbperminfo.hlp.h -myhelp vbperminfo.hlp
vbrc.py: processing -myhelp from vbperminfo.hlp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -o vbperminfo vbperminfo.cpp -Wl,--no-undefined 
-Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-as-needed -L/usr/local/lib -L../lib -lm -lvbprefs -lvbglm -lvbio 
-lvbutil -lz -lpng -ldl -lgsl -lgslcblas -lm -lboost_system
python ../lib/vbrc.py vbxts.hlp.h -myhelp vbxts.hlp
vbrc.py: processing -myhelp from vbxts.hlp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -o vbxts vbxts.cpp -lvbglm -Wl,--no-undefined 
-Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-as-needed -L/usr/local/lib -L../lib -lm -lvbprefs -lvbglm -lvbio 
-lvbutil -lz -lpng -ldl -lgsl -lgslcblas -lm -lboost_system
python ../lib/vbrc.py vbtmap.hlp.h -myhelp vbtmap.hlp
vbrc.py: processing -myhelp from vbtmap.hlp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -o vbtmap vbtmap.cpp -Wl,--no-undefined 
-Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-as-needed -L/usr/local/lib -L../lib -lm -lvbprefs -lvbglm -lvbio 
-lvbutil -lz -lpng -ldl -lgsl -lgslcblas -lm -lboost_system
python ../lib/vbrc.py vbmakeresid.hlp.h -myhelp vbmakeresid.hlp
vbrc.py: processing -myhelp from vbmakeresid.hlp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -o vbmakeresid vbmakeresid.cpp -lvbglm 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-undefined 
-Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed -L/usr/local/lib -L../lib -lm 
-lvbprefs -lvbglm -lvbio -lvbutil -lz -lpng -ldl -lgsl -lgslcblas -lm 
-lboost_system
python ../lib/vbrc.py vbfdr.hlp.h -myhelp vbfdr.hlp
vbrc.py: processing -myhelp from vbfdr.hlp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -o vbfdr vbfdr.cpp -lvbglm -Wl,--no-undefined 
-Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-as-needed -L/usr/local/lib -L../lib -lm -lvbprefs -lvbglm -lvbio 
-lvbutil -lz -lpng -ldl -lgsl -lgslcblas -lm -lboost_system
python ../lib/vbrc.py vbpermvec.hlp.h -myhelp vbpermvec.hlp
vbrc.py: processing -myhelp from vbpermvec.hlp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -o vbpermvec vbpermvec.cpp -lvbglm 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-undefined 
-Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed -L/usr/local/lib -L../lib -lm 
-lvbprefs -lvbglm -lvbio -lvbutil -lz -lpng -ldl -lgsl -lgslcblas -lm 
-lboost_system
python ../lib/vbrc.py vbscoregen.hlp.h -myhelp vbscoregen.hlp
vbrc.py: processing -myhelp from vbscoregen.hlp
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -o vbscoregen vbscoregen.cpp -lvbglm 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-undefined 
-Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed -L/usr/local/lib -L../lib -lm 
-lvbprefs -lvbglm -lvbio -lvbutil -lz -lpng -ldl -lgsl -lgslcblas -lm 
-lboost_system
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -o vbmap vbmap.cpp -lvbglm -Wl,--no-undefined 
-Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-as-needed -L/usr/local/lib -L../lib -lm -lvbprefs -lvbglm -lvbio 
-lvbutil -lz -lpng -ldl -lgsl -lgslcblas -lm -lboost_system
vbmap.cpp: In member function 'int VBmap::readdata()':
vbmap.cpp:112:7: warning: variable 'err' set but not used 
[-Wunused-but-set-variable]
   int err;
       ^
make[3]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/stats'
make -C crunch
make[3]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/crunch'
g++ -c -o vbmm2.o vbmm2.cpp -Wall -Wall -DLINUX -I/usr/local/include -I../lib 
-DLINUX -I/usr/local/include -I../lib -I/usr/local/include/octave
g++ -o vbmm2 vbmm2.o -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed 
-L/usr/local/lib -L../lib -L/usr/local/lib/octave -lm -lvbglm -lvbprefs -lvbio 
-lvbutil -lz -lpng -ldl -lgsl -lgslcblas -lm -lboost_system -lgsl -lgslcblas -lm
g++ -c -o vbmakeglm.o vbmakeglm.cpp -Wall -Wall -DLINUX -I/usr/local/include 
-I../lib -DLINUX -I/usr/local/include -I../lib -I/usr/local/include/octave
g++ -o vbmakeglm vbmakeglm.o -lvbprefs -Wl,--no-undefined 
-Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-as-needed -L/usr/local/lib -L../lib -L/usr/local/lib/octave -lm 
-lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -ldl -lgsl -lgslcblas -lm 
-lboost_system
g++ -c -o vbmakefilter.o vbmakefilter.cpp -Wall -Wall -DLINUX 
-I/usr/local/include -I../lib -DLINUX -I/usr/local/include -I../lib 
-I/usr/local/include/octave
g++ -o vbmakefilter vbmakefilter.o -lvbprefs -Wl,--no-undefined 
-Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-as-needed -L/usr/local/lib -L../lib -L/usr/local/lib/octave -lm 
-lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -ldl -lgsl -lgslcblas -lm 
-lboost_system
make[3]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/crunch'
make -C stand_alone
make[3]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/stand_alone'
g++ -c  calc_gs_ps.cpp -Wall -Wall -DLINUX -I/usr/local/include -I../lib 
-DLINUX -I/usr/local/include -I../lib
g++ -c timeseries.cpp -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib
g++ -c  utils.cpp -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib
g++ -c  koshutil.cpp -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib
g++ -o calcgs calcgs.cpp calc_gs_ps.o timeseries.o utils.o koshutil.o -Wall 
-Wall -DLINUX -I/usr/local/include -I../lib -DLINUX -I/usr/local/include 
-I../lib -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-undefined 
-Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed -L/usr/local/lib -L../lib 
-lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -lgsl -lgslcblas -lm -ldl 
-lboost_system
g++ -o calcps calcps.cpp calc_gs_ps.o timeseries.o utils.o koshutil.o -Wall 
-Wall -DLINUX -I/usr/local/include -I../lib -DLINUX -I/usr/local/include 
-I../lib -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-undefined 
-Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed -L/usr/local/lib -L../lib 
-lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -lgsl -lgslcblas -lm -ldl 
-lboost_system
g++ -o sliceacq sliceacq.cpp utils.o koshutil.o -Wall -Wall -DLINUX 
-I/usr/local/include -I../lib -DLINUX -I/usr/local/include -I../lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-undefined 
-Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed -L/usr/local/lib -L../lib 
-lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -lgsl -lgslcblas -lm -ldl 
-lboost_system
sliceacq.cpp: In function 'int main(int, char**)':
sliceacq.cpp:79:16: warning: variable 'dimX' set but not used 
[-Wunused-but-set-variable]
   unsigned int dimX = 0;
                ^
sliceacq.cpp:80:16: warning: variable 'dimY' set but not used 
[-Wunused-but-set-variable]
   unsigned int dimY = 0;
                ^
g++ -o tesplit tesplit.cpp utils.o koshutil.o -Wall -Wall -DLINUX 
-I/usr/local/include -I../lib -DLINUX -I/usr/local/include -I../lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-undefined 
-Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed -L/usr/local/lib -L../lib 
-lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -lgsl -lgslcblas -lm -ldl 
-lboost_system
g++ -o tesjoin tesjoin.cpp utils.o koshutil.o -Wall -Wall -DLINUX 
-I/usr/local/include -I../lib -DLINUX -I/usr/local/include -I../lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-undefined 
-Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed -L/usr/local/lib -L../lib 
-lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -lgsl -lgslcblas -lm -ldl 
-lboost_system
g++ -c regression.cpp -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib
g++ -o makematkg makematkg.cpp regression.o utils.o koshutil.o -Wall -Wall 
-DLINUX -I/usr/local/include -I../lib -DLINUX -I/usr/local/include -I../lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-undefined 
-Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed -L/usr/local/lib -L../lib 
-lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -lgsl -lgslcblas -lm -ldl 
-lboost_system
g++ -o makematk makematk.cpp regression.o utils.o koshutil.o -Wall -Wall 
-DLINUX -I/usr/local/include -I../lib -DLINUX -I/usr/local/include -I../lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-undefined 
-Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed -L/usr/local/lib -L../lib 
-lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -lgsl -lgslcblas -lm -ldl 
-lboost_system
g++ -o comptraces comptraces.cpp regression.o utils.o koshutil.o -Wall -Wall 
-DLINUX -I/usr/local/include -I../lib -DLINUX -I/usr/local/include -I../lib 
-Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-undefined 
-Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed -L/usr/local/lib -L../lib 
-lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -lgsl -lgslcblas -lm -ldl 
-lboost_system
g++ -c perm.cpp -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib
g++ -c time_series_avg.cpp -Wall -Wall -DLINUX -I/usr/local/include -I../lib 
-DLINUX -I/usr/local/include -I../lib
g++ -o permstep permstep.cpp perm.o utils.o time_series_avg.o koshutil.o -Wall 
-Wall -DLINUX -I/usr/local/include -I../lib -DLINUX -I/usr/local/include 
-I../lib -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-undefined 
-Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed -L/usr/local/lib -L../lib 
-lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -lgsl -lgslcblas -lm -ldl 
-lboost_system
g++ -c vbregress.cpp -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib
g++ -o vbregress vbregress.o -Wall -Wall -DLINUX -I/usr/local/include -I../lib 
-DLINUX -I/usr/local/include -I../lib -Wl,--no-undefined 
-Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib 
-Wl,--no-as-needed -L/usr/local/lib -L../lib -lvbglm -lvbprefs -lvbio -lvbutil 
-lz -lpng -lgsl -lgslcblas -lm -ldl -lboost_system
g++ -o vbpermmat vbpermmat.cpp perm.o utils.o time_series_avg.o koshutil.o 
-Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX -I/usr/local/include 
-I../lib -Wl,--no-undefined -Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-undefined 
-Wl,-rpath=/usr/lib/voxbo/lib -Wl,--no-as-needed -L/usr/local/lib -L../lib 
-lvbglm -lvbprefs -lvbio -lvbutil -lz -lpng -lgsl -lgslcblas -lm -ldl 
-lboost_system
make[3]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/stand_alone'
make -C utils
make[3]: Entering directory '/tmp/buildd/voxbo-1.8.5~svn1246/utils'
g++ -Wall -Wall -DLINUX -I/usr/local/include -I../lib -DLINUX 
-I/usr/local/include -I../lib -c fitOneOverF.cpp -o fitOneOverF.o
fitOneOverF.cpp: In function 'VB_Vector* curvefit(VB_Vector*, VB_Vector*, 
VB_Vector*, double, double, double, double, const char*, bool)':
fitOneOverF.cpp:205:26: error: 'struct gsl_multifit_fdfsolver' has no member 
named 'J'
   gsl_multifit_covar (s->J, 0.0, covar);
                          ^
fitOneOverF.cpp: In function 'VB_Vector* curvefit12(VB_Vector*, VB_Vector*, 
VB_Vector*, double, double, double, const char*, bool)':
fitOneOverF.cpp:398:26: error: 'struct gsl_multifit_fdfsolver' has no member 
named 'J'
   gsl_multifit_covar (s->J, 0.0, covar);
                          ^
Makefile:56: recipe for target 'fitOneOverF.o' failed
make[3]: *** [fitOneOverF.o] Error 1
make[3]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246/utils'
Makefile:43: recipe for target 'utils' failed
make[2]: *** [utils] Error 2
make[2]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246'
debian/rules:18: recipe for target 'override_dh_auto_build' failed
make[1]: *** [override_dh_auto_build] Error 2
make[1]: Leaving directory '/tmp/buildd/voxbo-1.8.5~svn1246'
debian/rules:12: recipe for target 'build' failed
make: *** [build] Error 2
dpkg-buildpackage: error: debian/rules build gave error exit status 2
E: Failed autobuilding of package
W: no hooks of type C found -- ignoring
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
 -> Cleaning COW directory
  forking: rm -rf /var/cache/pbuilder/build//cow.1151 

diff -Nru voxbo-1.8.5~svn1246/debian/changelog voxbo-1.8.5~svn1246/debian/changelog
--- voxbo-1.8.5~svn1246/debian/changelog	2014-07-25 02:35:59.000000000 +0200
+++ voxbo-1.8.5~svn1246/debian/changelog	2015-11-22 22:54:32.000000000 +0100
@@ -1,3 +1,10 @@
+voxbo (1.8.5~svn1246-1.2) UNRELEASED; urgency=medium
+
+  * Non-maintainer upload.
+  * Update build dependencies for GSL 2, change libgsl0-dev to libgsl-dev.
+
+ -- Bas Couwenberg <sebas...@debian.org>  Sun, 22 Nov 2015 22:54:30 +0100
+
 voxbo (1.8.5~svn1246-1.1) unstable; urgency=medium
 
   * Non-maintainer upload.
diff -Nru voxbo-1.8.5~svn1246/debian/control voxbo-1.8.5~svn1246/debian/control
--- voxbo-1.8.5~svn1246/debian/control	2014-07-25 02:35:59.000000000 +0200
+++ voxbo-1.8.5~svn1246/debian/control	2015-11-22 22:54:27.000000000 +0100
@@ -2,7 +2,7 @@
 Priority: extra
 Maintainer: NeuroDebian Team <t...@neuro.debian.net>
 Uploaders: Michael Hanke <m...@debian.org>, Yaroslav Halchenko <deb...@onerussian.com>
-Build-Depends: debhelper (>= 7.0.50~), python, zlib1g-dev, libboost-dev, libboost-thread-dev, libgsl0-dev, libpng-dev, libqt4-dev, libxi-dev, libxrender-dev, libfontconfig1-dev | libfontconfig-dev
+Build-Depends: debhelper (>= 7.0.50~), python, zlib1g-dev, libboost-dev, libboost-thread-dev, libgsl-dev, libpng-dev, libqt4-dev, libxi-dev, libxrender-dev, libfontconfig1-dev | libfontconfig-dev
 Standards-Version: 3.9.1
 Section: science
 Homepage: http://www.voxbo.org

--- End Message ---

--- Begin Message ---

Source: voxbo
Source-Version: 1.8.5~svn1246-2

We believe that the bug you reported is fixed in the latest version of
voxbo, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 805...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Michael Hanke <m...@debian.org> (supplier of updated voxbo package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Tue, 29 Dec 2015 19:16:06 +0100
Source: voxbo
Binary: voxbo
Architecture: source amd64
Version: 1.8.5~svn1246-2
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team <t...@neuro.debian.net>
Changed-By: Michael Hanke <m...@debian.org>
Description:
 voxbo      - processing, statistical analysis, and display of brain imaging da
Closes: 805835
Changes:
 voxbo (1.8.5~svn1246-2) unstable; urgency=medium
 .
   * The "probably last" update. Voxbo is now upstream-dead for 2+ years.
     However, popcon is still >200 (not bad for a package with a neuroscience
     audience). Hence, here is one more round of package modernization.
   * Acknowledge NMU: Thanks Andreas Moog.
   * Standardize debian/control via CME.
   * Bumped standards-version to 3.9.6, no changes necessary.
   * Updated build-dependency for GSL2, but keep alternatives for backports
     (GSL and PNG).
   * Import patch to fix FTBFS with GSL2. Courtesy of Iain Lane
     <i...@orangesquash.org.uk> (Closes: #805835).
   * Bump debhelper compatibility to 9.
   * Remove debian menu file in favor of desktop file.
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Files:
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voxbo-dbgsym_1.8.5~svn1246-2_amd64.deb
 c580d6e8d6683c927d2ec7846afef77d 2763846 science extra 
voxbo_1.8.5~svn1246-2_amd64.deb

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