Your message dated Fri, 25 Dec 2015 11:34:52 +0000
with message-id <e1acqe4-0002is...@franck.debian.org>
and subject line Bug#808537: fixed in jellyfish 2.2.4-2
has caused the Debian Bug report #808537,
regarding jellyfish: FTBFS: error: 'template<class> class std::auto_ptr' is
deprecated [-Werror=deprecated-declarations]
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
808537: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=808537
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: jellyfish
Version: 2.2.4-1
Severity: serious
Justification: fails to build from source
Tags: sid
User: reproducible-bui...@lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-CC: reproducible-bui...@lists.alioth.debian.org
Dear Maintainer,
The package fails to build:
g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -g -O3
-D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -Werror -std=c++0x -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -c -o
sub_commands/count_main.o sub_commands/count_main.cc
sub_commands/count_main.cc: In function ‘int count_main(int, char**)’:
sub_commands/count_main.cc:248:8: error: ‘template<class> class std::auto_ptr’
is deprecated [-Werror=deprecated-declarations]
std::auto_ptr<jellyfish::dumper_t<mer_array> > dumper;
^
In file included from /usr/include/c++/5/memory:81:0,
from sub_commands/count_main.cc:28:
/usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^
cc1plus: all warnings being treated as errors
Makefile:1615: recipe for target 'sub_commands/count_main.o' failed
make[3]: *** [sub_commands/count_main.o] Error 1
make[3]: Leaving directory '/jellyfish-2.2.4'
Full build log:
https://reproducible.debian.net/rb-pkg/unstable/amd64/jellyfish.html
-- System Information:
Debian Release: stretch/sid
APT prefers unstable
APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)
--- End Message ---
--- Begin Message ---
Source: jellyfish
Source-Version: 2.2.4-2
We believe that the bug you reported is fixed in the latest version of
jellyfish, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 808...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated jellyfish package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Fri, 25 Dec 2015 12:17:44 +0100
Source: jellyfish
Binary: jellyfish libjellyfish-2.0-2 libjellyfish-2.0-dev jellyfish-examples
Architecture: source amd64
Version: 2.2.4-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
jellyfish - count k-mers in DNA sequences
jellyfish-examples - count k-mers in DNA sequences (examples for testing)
libjellyfish-2.0-2 - count k-mers in DNA sequences (dynamic library of
jellyfish)
libjellyfish-2.0-dev - count k-mers in DNA sequences (development files of
jellyfish)
Closes: 808537
Changes:
jellyfish (2.2.4-2) unstable; urgency=medium
.
* enable build with c++11 and -Werror=deprecated-declarations compile
flag (thanks for the hint to Gert Wollny)
Closes: #808537
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