Your message dated Fri, 06 Nov 2015 23:21:40 +0000
with message-id <e1zuqkc-0007cq...@franck.debian.org>
and subject line Bug#803567: fixed in r-bioc-cummerbund 2.12.0-1
has caused the Debian Bug report #803567,
regarding r-bioc-cummerbund: FTBFS: objects 'FilterRules', 'seqsplit',
'FilterMatrix', 'subsetByFilter' are not exported by 'namespace:IRanges'
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
803567: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=803567
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: r-bioc-cummerbund
Version: 2.10.0-1
Severity: serious
Justification: fails to build from source
User: reproducible-bui...@lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-Cc: reproducible-bui...@lists.alioth.debian.org
Dear Maintainer,
r-bioc-cummerbund fails to build from source in unstable/amd64:
[..]
* installing *source* package 'cummeRbund' ...
** R
** data
** inst
** preparing package for lazy loading
Warning: replacing previous import by 'IRanges::FilterRules' when
loading 'VariantAnnotation'
Warning: replacing previous import by 'IRanges::FilterMatrix' when
loading 'VariantAnnotation'
Error : objects 'FilterRules', 'seqsplit', 'FilterMatrix',
'subsetByFilter' are not exported by 'namespace:IRanges'
Error : package 'Gviz' could not be loaded
ERROR: lazy loading failed for package 'cummeRbund'
* removing
'/home/lamby/temp/cdt.20151031125953.K7Z1F3IZ2W/r-bioc-cummerbund-2.10.0/debian/r-bioc-cummerbund/usr/lib/R/site-library/cummeRbund'
/usr/share/R/debian/r-cran.mk:98: recipe for target 'R_any_arch'
failed
make: *** [R_any_arch] Error 1
[..]
The full build log is attached.
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` la...@debian.org / chris-lamb.co.uk
`-
r-bioc-cummerbund.2.10.0-1.unstable.amd64.log.txt.gz
Description: application/gzip
--- End Message ---
--- Begin Message ---
Source: r-bioc-cummerbund
Source-Version: 2.12.0-1
We believe that the bug you reported is fixed in the latest version of
r-bioc-cummerbund, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 803...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated r-bioc-cummerbund package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Fri, 06 Nov 2015 15:20:28 +0100
Source: r-bioc-cummerbund
Binary: r-bioc-cummerbund
Architecture: source all
Version: 2.12.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
r-bioc-cummerbund - tool for analysis of Cufflinks RNA-Seq output
Closes: 803567
Changes:
r-bioc-cummerbund (2.12.0-1) unstable; urgency=medium
.
* New upstream version
Closes: #803567
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