Your message dated Tue, 27 Oct 2015 19:25:50 +0000
with message-id <e1zr9su-0003j9...@franck.debian.org>
and subject line Bug#802867: fixed in python-biom-format 2.1.4+dfsg-1
has caused the Debian Bug report #802867,
regarding python-biom-format: FTBFS: _filter.pyx: Incompatible types in
conditional expression ((Py_ssize_t, Py_ssize_t); (long, long))
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
802867: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=802867
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: python-biom-format
Version: 2.1+dfsg-1
Severity: serious
Justification: fails to build from source
Tags: sid stretch
User: reproducible-bui...@lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-CC: reproducible-bui...@lists.alioth.debian.org
Dear Maintainer,
The package fails to build:
running config
debian/rules override_dh_auto_build
make[1]: Entering directory '/python-biom-format-2.1+dfsg'
USE_CYTHON=true dh_auto_build
I: pybuild base:170: /usr/bin/python setup.py build
Error compiling Cython file:
------------------------------------------------------------
...
offset += end - start
offset_rows += 1
arr.data = data[:nnz]
arr.indices = indices[:nnz]
arr.indptr = indptr[:m-offset_rows+1]
arr._shape = (m - offset_rows, n) if m-offset_rows else (0, 0)
^
------------------------------------------------------------
biom/_filter.pyx:87:17: Incompatible types in conditional expression
((Py_ssize_t, Py_ssize_t); (long, long))
Compiling biom/_filter.pyx because it changed.
Compiling biom/_transform.pyx because it changed.
Compiling biom/_subsample.pyx because it changed.
[1/3] Cythonizing biom/_filter.pyx
Traceback (most recent call last):
File "setup.py", line 80, in <module>
extensions = cythonize(extensions)
File "/usr/lib/python2.7/dist-packages/Cython/Build/Dependencies.py", line
877, in cythonize
cythonize_one(*args)
File "/usr/lib/python2.7/dist-packages/Cython/Build/Dependencies.py", line
997, in cythonize_one
raise CompileError(None, pyx_file)
Cython.Compiler.Errors.CompileError: biom/_filter.pyx
E: pybuild pybuild:262: build: plugin distutils failed with: exit code=1:
/usr/bin/python setup.py build
dh_auto_build: pybuild --build -i python{version} -p 2.7 --dir . returned exit
code 13
debian/rules:23: recipe for target 'override_dh_auto_build' failed
Full build log:
https://reproducible.debian.net/rb-pkg/unstable/amd64/python-biom-format.html
-- System Information:
Debian Release: stretch/sid
APT prefers unstable
APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)
--- End Message ---
--- Begin Message ---
Source: python-biom-format
Source-Version: 2.1.4+dfsg-1
We believe that the bug you reported is fixed in the latest version of
python-biom-format, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 802...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated python-biom-format
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Tue, 27 Oct 2015 18:46:33 +0100
Source: python-biom-format
Binary: python-biom-format
Architecture: source amd64
Version: 2.1.4+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
python-biom-format - Biological Observation Matrix (BIOM) format
Closes: 802867
Changes:
python-biom-format (2.1.4+dfsg-1) unstable; urgency=medium
.
* New upstream version
Closes: #802867
* Moved from SVN to Git
* cme fix dpkg-control
* Fix watch file
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--- End Message ---
