Source: bppphyview
Version: 0.3.0-1
Severity: serious
Justification: fails to build from source
User: reproducible-bui...@lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-Cc: reproducible-bui...@lists.alioth.debian.org
Dear Maintainer,
bppphyview fails to build from source in unstable/amd64, probably GCC-5
related:
[..]
CMakeFiles/phyview.dir/PhyView.cpp.o: In function
`InsertSubtreeOnBranchCommand::InsertSubtreeOnBranchCommand(TreeDocument*,
int, bpp::Node*)':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.h:225: undefined
reference to `bpp::TextTools::toString[abi:cxx11](int)'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function `main':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/PhyView.cpp:1150: undefined
reference to `bpp::IOTreeFactory::NEWICK_FORMAT[abi:cxx11]'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function `void
std::__cxx11::basic_string<char, std::char_traits<char>,
std::allocator<char> >::_M_construct_aux<char*>(char*, char*,
std::__false_type)':
/usr/include/c++/5/bits/basic_string.h:195: undefined reference to
`bpp::IOTreeFactory::NEWICK_FORMAT[abi:cxx11]'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function
`std::__cxx11::basic_string<char, std::char_traits<char>,
std::allocator<char> >::assign(std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&)':
/usr/include/c++/5/bits/basic_string.h:1094: undefined reference to
`bpp::IOTreeFactory::NHX_FORMAT[abi:cxx11]'
/usr/include/c++/5/bits/basic_string.h:1094: undefined reference to
`bpp::IOTreeFactory::NEWICK_FORMAT[abi:cxx11]'
CMakeFiles/phyview.dir/TreeSubWindow.cpp.o: In function `QString
bpp::QtTools::toQt<double>(bpp::Number<double> const&)':
/usr/include/Bpp/Qt/QtTools.h:83: undefined reference to
`bpp::TextTools::toString[abi:cxx11](double, int)'
CMakeFiles/phyview.dir/TreeSubWindow.cpp.o: In function
`TreeSubWindow::updateTable()':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeSubWindow.cpp:107:
undefined reference to
`bpp::TreeTemplateTools::getNodePropertyNames(bpp::Node const&,
std::vector<std::__cxx11::basic_string<char, std::char_traits<char>,
std::allocator<char> >,
std::allocator<std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > > >&)'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeSubWindow.cpp:109:
undefined reference to
`bpp::TreeTemplateTools::getBranchPropertyNames(bpp::Node const&,
std::vector<std::__cxx11::basic_string<char, std::char_traits<char>,
std::allocator<char> >,
std::allocator<std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > > >&)'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeSubWindow.cpp:122:
undefined reference to `bpp::TextTools::toString[abi:cxx11](int)'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeSubWindow.cpp:133:
undefined reference to `bpp::TextTools::toString[abi:cxx11](double,
int)'
CMakeFiles/phyview.dir/TreeSubWindow.cpp.o: In function
`ChangeNodeNameCommand::ChangeNodeNameCommand(TreeDocument*, int,
std::__cxx11::basic_string<char, std::char_traits<char>,
std::allocator<char> > const&)':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.h:266: undefined
reference to `bpp::TextTools::toString[abi:cxx11](int)'
CMakeFiles/phyview.dir/TreeSubWindow.cpp.o: In function
`ChangeBranchLengthCommand::ChangeBranchLengthCommand(TreeDocument*,
int, double)':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.h:254: undefined
reference to `bpp::TextTools::toString[abi:cxx11](double, int)'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.h:254: undefined
reference to `bpp::TextTools::toString[abi:cxx11](int)'
CMakeFiles/phyview.dir/TreeCommands.cpp.o: In function
`AttachDataCommand::addProperties_(bpp::Node*, bpp::DataTable const&,
unsigned int, bool)':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.cpp:75: undefined
reference to `bpp::TextTools::toString[abi:cxx11](int)'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.cpp:77: undefined
reference to `bpp::DataTable::operator()[abi:cxx11](unsigned long,
unsigned long) const'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.cpp:80: undefined
reference to `bpp::DataTable::operator()[abi:cxx11](unsigned long,
unsigned long) const'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.cpp:80: undefined
reference to `bpp::DataTable::getColumnName[abi:cxx11](unsigned long)
const'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.cpp:90: undefined
reference to `bpp::DataTable::operator()[abi:cxx11](unsigned long,
unsigned long) const'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.cpp:93: undefined
reference to `bpp::DataTable::operator()[abi:cxx11](unsigned long,
unsigned long) const'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.cpp:93: undefined
reference to `bpp::DataTable::getColumnName[abi:cxx11](unsigned long)
const'
CMakeFiles/phyview.dir/TreeCommands.cpp.o: In function
`TranslateNodeNamesCommand::TranslateNodeNamesCommand(TreeDocument*,
bpp::DataTable const&, unsigned int, unsigned int)':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.cpp:45: undefined
reference to `bpp::DataTable::getColumnName[abi:cxx11](unsigned long)
const'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.cpp:45: undefined
reference to `bpp::DataTable::getColumnName[abi:cxx11](unsigned long)
const'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.cpp:51: undefined
reference to `bpp::DataTable::operator()[abi:cxx11](unsigned long,
unsigned long) const'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.cpp:51: undefined
reference to `bpp::DataTable::operator()[abi:cxx11](unsigned long,
unsigned long) const'
collect2: error: ld returned 1 exit status
bppPhyView/CMakeFiles/phyview.dir/build.make:203: recipe for target
'bppPhyView/phyview' failed
make[3]: *** [bppPhyView/phyview] Error 1
make[3]: Leaving directory '/tmp/buildd/bppphyview-0.3.0'
CMakeFiles/Makefile2:299: recipe for target
'bppPhyView/CMakeFiles/phyview.dir/all' failed
make[2]: *** [bppPhyView/CMakeFiles/phyview.dir/all] Error 2
make[2]: Leaving directory '/tmp/buildd/bppphyview-0.3.0'
Makefile:136: recipe for target 'all' failed
make[1]: *** [all] Error 2
make[1]: Leaving directory '/tmp/buildd/bppphyview-0.3.0'
debian/rules:103: recipe for target 'install-arch' failed
make: *** [install-arch] Error 2
dpkg-buildpackage: error: fakeroot debian/rules binary gave error exit
status 2
[..]
The full build log is attached or can be viewed here:
https://reproducible.debian.net/logs/unstable/amd64/bppphyview_0.3.0-1.build1.log.gz
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` la...@debian.org / chris-lamb.co.uk
`-
I: using fakeroot in build.
I: pbuilder: network access will be disabled during build
I: Current time: Fri Sep 11 09:13:49 GMT+12 2015
I: pbuilder-time-stamp: 1442006029
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: creating local configuration
I: copying local configuration
I: mounting /proc filesystem
I: mounting /run/shm filesystem
I: mounting /dev/pts filesystem
I: Mounting /dev/shm
I: Mounting /sys
I: policy-rc.d already exists
I: Installing the build-deps
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-ma...@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by
pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper (>= 5), cmake (>= 2.6), qt4-qmake (>= 4.6.0), libqt4-dev (>=
4.6.0), libbpp-qt-dev (>= 2.1.0)
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in
'/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 20226 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring
anyway as you requested:
pbuilder-satisfydepends-dummy depends on cmake (>= 2.6); however:
Package cmake is not installed.
pbuilder-satisfydepends-dummy depends on qt4-qmake (>= 4.6.0); however:
Package qt4-qmake is not installed.
pbuilder-satisfydepends-dummy depends on libqt4-dev (>= 4.6.0); however:
Package libqt4-dev is not installed.
pbuilder-satisfydepends-dummy depends on libbpp-qt-dev (>= 2.1.0); however:
Package libbpp-qt-dev is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version
(0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version
(0.invalid.0)
The following NEW packages will be installed:
cmake{a} cmake-data{a} fontconfig{a} fontconfig-config{a}
fonts-dejavu-core{a} libarchive13{a} libaudio2{a} libbpp-core-dev{a}
libbpp-core2{a} libbpp-phyl-dev{a} libbpp-phyl9{a} libbpp-qt-dev{a}
libbpp-qt1{a} libbpp-seq-dev{a} libbpp-seq9{a} libcurl3{a} libdbus-1-3{a}
libexpat1{a} libfontconfig1{a} libfreetype6{a} libgnutls-deb0-28{a}
libgssapi-krb5-2{a} libhogweed4{a} libice6{a} libidn11{a} libjbig0{a}
libjpeg62-turbo{a} libjsoncpp0v5{a} libk5crypto3{a} libkeyutils1{a}
libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} libldap-2.4-2{a}
liblzo2-2{a} libmng1{a} libnettle6{a} libp11-kit0{a} libpng12-0{a}
libqt4-dbus{a} libqt4-declarative{a} libqt4-designer{a} libqt4-dev{a}
libqt4-dev-bin{a} libqt4-help{a} libqt4-network{a} libqt4-qt3support{a}
libqt4-script{a} libqt4-scripttools{a} libqt4-sql{a} libqt4-svg{a}
libqt4-test{a} libqt4-xml{a} libqt4-xmlpatterns{a} libqtcore4{a}
libqtdbus4{a} libqtgui4{a} librtmp1{a} libsasl2-2{a}
libsasl2-modules-db{a} libsm6{a} libssh2-1{a} libssl1.0.0{a}
libtasn1-6{a} libtiff5{a} libx11-6{a} libx11-data{a} libxau6{a}
libxcb1{a} libxdmcp6{a} libxext6{a} libxrender1{a} libxt6{a} qdbus{a}
qt4-linguist-tools{a} qt4-qmake{a} qtchooser{a} qtcore4-l10n{a} ucf{a}
x11-common{a}
0 packages upgraded, 80 newly installed, 0 to remove and 0 not upgraded.
Need to get 46.4 MB of archives. After unpacking 186 MB will be used.
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Get: 71 http://ftp.de.debian.org/debian/ unstable/main libbpp-phyl9 amd64
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Get: 73 http://ftp.de.debian.org/debian/ unstable/main libbpp-seq-dev amd64
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Get: 74 http://reproducible.alioth.debian.org/debian/ ./ libqt4-dev
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Get: 75 http://ftp.de.debian.org/debian/ unstable/main libbpp-phyl-dev amd64
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-- Creating generic include file: /usr/include/Bpp/Qt.all
-- Creating generic include file: /usr/include/Bpp/Qt/Tree.all
-- Creating generic include file: /usr/include/Bpp/Seq.all
-- Creating generic include file: /usr/include/Bpp/Seq/Alphabet.all
-- Creating generic include file: /usr/include/Bpp/Seq/AlphabetIndex.all
-- Creating generic include file: /usr/include/Bpp/Seq/App.all
-- Creating generic include file: /usr/include/Bpp/Seq/Container.all
-- Creating generic include file: /usr/include/Bpp/Seq/GeneticCode.all
-- Creating generic include file: /usr/include/Bpp/Seq/Io.all
-- Creating generic include file: /usr/include/Bpp/Text.all
-- Creating generic include file: /usr/include/Bpp/Utils.all
Setting up libbpp-seq9 (2.1.0-1) ...
Setting up libbpp-phyl9 (2.1.0-1) ...
Setting up libbpp-seq-dev (2.1.0-1) ...
-- Creating generic include file: /usr/include/Bpp.all
-- Creating generic include file: /usr/include/Bpp/App.all
-- Creating generic include file: /usr/include/Bpp/Graph.all
-- Creating generic include file: /usr/include/Bpp/Graphics.all
-- Creating generic include file: /usr/include/Bpp/Graphics/Fig.all
-- Creating generic include file: /usr/include/Bpp/Graphics/Font.all
-- Creating generic include file: /usr/include/Bpp/Graphics/Latex.all
-- Creating generic include file: /usr/include/Bpp/Graphics/Molscript.all
-- Creating generic include file: /usr/include/Bpp/Graphics/R.all
-- Creating generic include file: /usr/include/Bpp/Graphics/Svg.all
-- Creating generic include file: /usr/include/Bpp/Io.all
-- Creating generic include file: /usr/include/Bpp/Numeric.all
-- Creating generic include file: /usr/include/Bpp/Numeric/Function.all
-- Creating generic include file: /usr/include/Bpp/Numeric/Hmm.all
-- Creating generic include file: /usr/include/Bpp/Numeric/Matrix.all
-- Creating generic include file: /usr/include/Bpp/Numeric/Prob.all
-- Creating generic include file: /usr/include/Bpp/Numeric/Random.all
-- Creating generic include file: /usr/include/Bpp/Numeric/Stat.all
-- Creating generic include file: /usr/include/Bpp/Numeric/Stat/Mva.all
-- Creating generic include file: /usr/include/Bpp/Phyl.all
-- Creating generic include file: /usr/include/Bpp/Phyl/App.all
-- Creating generic include file: /usr/include/Bpp/Phyl/Distance.all
-- Creating generic include file: /usr/include/Bpp/Phyl/Graphics.all
-- Creating generic include file: /usr/include/Bpp/Phyl/Io.all
-- Creating generic include file: /usr/include/Bpp/Phyl/Likelihood.all
-- Creating generic include file: /usr/include/Bpp/Phyl/Mapping.all
-- Creating generic include file: /usr/include/Bpp/Phyl/Model.all
-- Creating generic include file: /usr/include/Bpp/Phyl/Model/Codon.all
-- Creating generic include file: /usr/include/Bpp/Phyl/Model/FrequenciesSet.all
-- Creating generic include file: /usr/include/Bpp/Phyl/Model/Nucleotide.all
-- Creating generic include file: /usr/include/Bpp/Phyl/Model/Protein.all
-- Creating generic include file:
/usr/include/Bpp/Phyl/Model/RateDistribution.all
-- Creating generic include file: /usr/include/Bpp/Phyl/Parsimony.all
-- Creating generic include file: /usr/include/Bpp/Phyl/Simulation.all
-- Creating generic include file: /usr/include/Bpp/Qt.all
-- Creating generic include file: /usr/include/Bpp/Qt/Tree.all
-- Creating generic include file: /usr/include/Bpp/Seq.all
-- Creating generic include file: /usr/include/Bpp/Seq/Alphabet.all
-- Creating generic include file: /usr/include/Bpp/Seq/AlphabetIndex.all
-- Creating generic include file: /usr/include/Bpp/Seq/App.all
-- Creating generic include file: /usr/include/Bpp/Seq/Container.all
-- Creating generic include file: /usr/include/Bpp/Seq/GeneticCode.all
-- Creating generic include file: /usr/include/Bpp/Seq/Io.all
-- Creating generic include file: /usr/include/Bpp/Text.all
-- Creating generic include file: /usr/include/Bpp/Utils.all
Setting up libbpp-phyl-dev (2.1.0-1) ...
-- Creating generic include file: /usr/include/Bpp.all
-- Creating generic include file: /usr/include/Bpp/App.all
-- Creating generic include file: /usr/include/Bpp/Graph.all
-- Creating generic include file: /usr/include/Bpp/Graphics.all
-- Creating generic include file: /usr/include/Bpp/Graphics/Fig.all
-- Creating generic include file: /usr/include/Bpp/Graphics/Font.all
-- Creating generic include file: /usr/include/Bpp/Graphics/Latex.all
-- Creating generic include file: /usr/include/Bpp/Graphics/Molscript.all
-- Creating generic include file: /usr/include/Bpp/Graphics/R.all
-- Creating generic include file: /usr/include/Bpp/Graphics/Svg.all
-- Creating generic include file: /usr/include/Bpp/Io.all
-- Creating generic include file: /usr/include/Bpp/Numeric.all
-- Creating generic include file: /usr/include/Bpp/Numeric/Function.all
-- Creating generic include file: /usr/include/Bpp/Numeric/Hmm.all
-- Creating generic include file: /usr/include/Bpp/Numeric/Matrix.all
-- Creating generic include file: /usr/include/Bpp/Numeric/Prob.all
-- Creating generic include file: /usr/include/Bpp/Numeric/Random.all
-- Creating generic include file: /usr/include/Bpp/Numeric/Stat.all
-- Creating generic include file: /usr/include/Bpp/Numeric/Stat/Mva.all
-- Creating generic include file: /usr/include/Bpp/Phyl.all
-- Creating generic include file: /usr/include/Bpp/Phyl/App.all
-- Creating generic include file: /usr/include/Bpp/Phyl/Distance.all
-- Creating generic include file: /usr/include/Bpp/Phyl/Graphics.all
-- Creating generic include file: /usr/include/Bpp/Phyl/Io.all
-- Creating generic include file: /usr/include/Bpp/Phyl/Likelihood.all
-- Creating generic include file: /usr/include/Bpp/Phyl/Mapping.all
-- Creating generic include file: /usr/include/Bpp/Phyl/Model.all
-- Creating generic include file: /usr/include/Bpp/Phyl/Model/Codon.all
-- Creating generic include file: /usr/include/Bpp/Phyl/Model/FrequenciesSet.all
-- Creating generic include file: /usr/include/Bpp/Phyl/Model/Nucleotide.all
-- Creating generic include file: /usr/include/Bpp/Phyl/Model/Protein.all
-- Creating generic include file:
/usr/include/Bpp/Phyl/Model/RateDistribution.all
-- Creating generic include file: /usr/include/Bpp/Phyl/Parsimony.all
-- Creating generic include file: /usr/include/Bpp/Phyl/Simulation.all
-- Creating generic include file: /usr/include/Bpp/Qt.all
-- Creating generic include file: /usr/include/Bpp/Qt/Tree.all
-- Creating generic include file: /usr/include/Bpp/Seq.all
-- Creating generic include file: /usr/include/Bpp/Seq/Alphabet.all
-- Creating generic include file: /usr/include/Bpp/Seq/AlphabetIndex.all
-- Creating generic include file: /usr/include/Bpp/Seq/App.all
-- Creating generic include file: /usr/include/Bpp/Seq/Container.all
-- Creating generic include file: /usr/include/Bpp/Seq/GeneticCode.all
-- Creating generic include file: /usr/include/Bpp/Seq/Io.all
-- Creating generic include file: /usr/include/Bpp/Text.all
-- Creating generic include file: /usr/include/Bpp/Utils.all
Setting up qtcore4-l10n (4:4.8.7+dfsg-3.0~reproducible1) ...
Setting up libqtcore4:amd64 (4:4.8.7+dfsg-3.0~reproducible1) ...
Setting up libtiff5:amd64 (4.0.5-1) ...
Setting up libqtgui4:amd64 (4:4.8.7+dfsg-3.0~reproducible1) ...
Setting up libbpp-qt1 (2.1.0-1) ...
Setting up libdbus-1-3:amd64 (1.8.20-1) ...
Setting up libqt4-xml:amd64 (4:4.8.7+dfsg-3.0~reproducible1) ...
Setting up libqtdbus4:amd64 (4:4.8.7+dfsg-3.0~reproducible1) ...
Setting up qtchooser (52-gae5eeef-2) ...
Setting up qdbus (4:4.8.7+dfsg-3.0~reproducible1) ...
Setting up libqt4-dbus:amd64 (4:4.8.7+dfsg-3.0~reproducible1) ...
Setting up libqt4-network:amd64 (4:4.8.7+dfsg-3.0~reproducible1) ...
Setting up libqt4-script:amd64 (4:4.8.7+dfsg-3.0~reproducible1) ...
Setting up libqt4-sql:amd64 (4:4.8.7+dfsg-3.0~reproducible1) ...
Setting up libqt4-xmlpatterns:amd64 (4:4.8.7+dfsg-3.0~reproducible1) ...
Setting up libqt4-declarative:amd64 (4:4.8.7+dfsg-3.0~reproducible1) ...
Setting up libqt4-designer:amd64 (4:4.8.7+dfsg-3.0~reproducible1) ...
Setting up libqt4-qt3support:amd64 (4:4.8.7+dfsg-3.0~reproducible1) ...
Setting up libqt4-dev-bin (4:4.8.7+dfsg-3.0~reproducible1) ...
Setting up libqt4-help:amd64 (4:4.8.7+dfsg-3.0~reproducible1) ...
Setting up libqt4-scripttools:amd64 (4:4.8.7+dfsg-3.0~reproducible1) ...
Setting up libqt4-svg:amd64 (4:4.8.7+dfsg-3.0~reproducible1) ...
Setting up libqt4-test:amd64 (4:4.8.7+dfsg-3.0~reproducible1) ...
Setting up qt4-linguist-tools (4:4.8.7+dfsg-3.0~reproducible1) ...
Setting up qt4-qmake (4:4.8.7+dfsg-3.0~reproducible1) ...
Setting up libqt4-dev (4:4.8.7+dfsg-3.0~reproducible1) ...
Setting up libbpp-qt-dev (2.1.0-1) ...
-- Creating generic include file: /usr/include/Bpp.all
-- Creating generic include file: /usr/include/Bpp/App.all
-- Creating generic include file: /usr/include/Bpp/Graph.all
-- Creating generic include file: /usr/include/Bpp/Graphics.all
-- Creating generic include file: /usr/include/Bpp/Graphics/Fig.all
-- Creating generic include file: /usr/include/Bpp/Graphics/Font.all
-- Creating generic include file: /usr/include/Bpp/Graphics/Latex.all
-- Creating generic include file: /usr/include/Bpp/Graphics/Molscript.all
-- Creating generic include file: /usr/include/Bpp/Graphics/R.all
-- Creating generic include file: /usr/include/Bpp/Graphics/Svg.all
-- Creating generic include file: /usr/include/Bpp/Io.all
-- Creating generic include file: /usr/include/Bpp/Numeric.all
-- Creating generic include file: /usr/include/Bpp/Numeric/Function.all
-- Creating generic include file: /usr/include/Bpp/Numeric/Hmm.all
-- Creating generic include file: /usr/include/Bpp/Numeric/Matrix.all
-- Creating generic include file: /usr/include/Bpp/Numeric/Prob.all
-- Creating generic include file: /usr/include/Bpp/Numeric/Random.all
-- Creating generic include file: /usr/include/Bpp/Numeric/Stat.all
-- Creating generic include file: /usr/include/Bpp/Numeric/Stat/Mva.all
-- Creating generic include file: /usr/include/Bpp/Phyl.all
-- Creating generic include file: /usr/include/Bpp/Phyl/App.all
-- Creating generic include file: /usr/include/Bpp/Phyl/Distance.all
-- Creating generic include file: /usr/include/Bpp/Phyl/Graphics.all
-- Creating generic include file: /usr/include/Bpp/Phyl/Io.all
-- Creating generic include file: /usr/include/Bpp/Phyl/Likelihood.all
-- Creating generic include file: /usr/include/Bpp/Phyl/Mapping.all
-- Creating generic include file: /usr/include/Bpp/Phyl/Model.all
-- Creating generic include file: /usr/include/Bpp/Phyl/Model/Codon.all
-- Creating generic include file: /usr/include/Bpp/Phyl/Model/FrequenciesSet.all
-- Creating generic include file: /usr/include/Bpp/Phyl/Model/Nucleotide.all
-- Creating generic include file: /usr/include/Bpp/Phyl/Model/Protein.all
-- Creating generic include file:
/usr/include/Bpp/Phyl/Model/RateDistribution.all
-- Creating generic include file: /usr/include/Bpp/Phyl/Parsimony.all
-- Creating generic include file: /usr/include/Bpp/Phyl/Simulation.all
-- Creating generic include file: /usr/include/Bpp/Qt.all
-- Creating generic include file: /usr/include/Bpp/Qt/Tree.all
-- Creating generic include file: /usr/include/Bpp/Seq.all
-- Creating generic include file: /usr/include/Bpp/Seq/Alphabet.all
-- Creating generic include file: /usr/include/Bpp/Seq/AlphabetIndex.all
-- Creating generic include file: /usr/include/Bpp/Seq/App.all
-- Creating generic include file: /usr/include/Bpp/Seq/Container.all
-- Creating generic include file: /usr/include/Bpp/Seq/GeneticCode.all
-- Creating generic include file: /usr/include/Bpp/Seq/Io.all
-- Creating generic include file: /usr/include/Bpp/Text.all
-- Creating generic include file: /usr/include/Bpp/Utils.all
Processing triggers for libc-bin (2.19-19) ...
Processing triggers for systemd (226-1) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
fakeroot is already the newest version.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Copying source file
I: copying [bppphyview_0.3.0-1.dsc]
I: copying [./bppphyview_0.3.0.orig.tar.gz]
I: copying [./bppphyview_0.3.0-1.debian.tar.gz]
I: Extracting source
gpgv: keyblock resource `/tmp/buildd/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Sun May 26 03:21:50 2013 GMT+12 using DSA key ID 497A176D
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./bppphyview_0.3.0-1.dsc
dpkg-source: info: extracting bppphyview in bppphyview-0.3.0
dpkg-source: info: unpacking bppphyview_0.3.0.orig.tar.gz
dpkg-source: info: unpacking bppphyview_0.3.0-1.debian.tar.gz
I: Building the package
I: Running cd tmp/buildd/*/ && env
PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" dpkg-buildpackage -us -uc -b
-rfakeroot
dpkg-buildpackage: source package bppphyview
dpkg-buildpackage: source version 0.3.0-1
dpkg-buildpackage: source distribution unstable
dpkg-buildpackage: source changed by Julien Dutheil
<julien.duth...@univ-montp2.fr>
dpkg-source --before-build bppphyview-0.3.0
dpkg-buildpackage: host architecture amd64
fakeroot debian/rules clean
dh_testdir
dh_testroot
rm -f build-arch-stamp build-indep-stamp #CONFIGURE-STAMP#
rm -f CMakeCache.txt
# Add here commands to clean up after the build process.
[ ! -f Makefile ] || /usr/bin/make clean;
[ ! -f Makefile ] || rm Makefile;
[ ! -f bppPhyView/Makefile ] || rm bppPhyView/Makefile;
[ ! -f man/Makefile ] || rm man/Makefile;
rm -f man/*.gz;
rm -f config.sub config.guess
rm -f build-stamp
rm -f CMakeCache.txt
rm -f *.cmake
rm -f bppPhyView/*.cmake
#rm -f test/*.cmake
rm -f man/*.cmake
#rm -f doc/*.cmake
rm -rf CMakeFiles
rm -rf bppPhyView/CMakeFiles
#rm -rf test/CMakeFiles
rm -rf man/CMakeFiles
#rm -rf doc/CMakeFiles
rm -rf _CPack_Packages
#rm -rf Testing
#rm -f DartConfiguration.tcl
dh_clean
debian/rules build
cmake -DCMAKE_INSTALL_PREFIX=/usr .
-- The CXX compiler identification is GNU 5.2.1
-- The C compiler identification is GNU 5.2.1
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Found nroff here: /usr/bin/nroff
Adding targets: man
-- Library bpp-qt found here:
includes: /usr/include
dynamic libraries: /usr/lib/libbpp-qt.so
-- Library bpp-phyl found here:
includes: /usr/include
dynamic libraries: /usr/lib/libbpp-phyl.so
-- Library bpp-seq found here:
includes: /usr/include
dynamic libraries: /usr/lib/libbpp-seq.so
-- Library bpp-core found here:
includes: /usr/include
dynamic libraries: /usr/lib/libbpp-core.so
-- Looking for Q_WS_X11
-- Looking for Q_WS_X11 - found
-- Looking for Q_WS_WIN
-- Looking for Q_WS_WIN - not found
-- Looking for Q_WS_QWS
-- Looking for Q_WS_QWS - not found
-- Looking for Q_WS_MAC
-- Looking for Q_WS_MAC - not found
-- Found Qt4: /usr/bin/qmake (found suitable version "4.8.7", minimum required
is "4.4.0")
-- Configuring done
-- Generating done
-- Build files have been written to: /tmp/buildd/bppphyview-0.3.0
dh_testdir
# Add here commands to compile the arch part of the package.
#/usr/bin/make
touch build-arch-stamp
# Add here commands to compile the indep part of the package.
#/usr/bin/make doc
touch build-indep-stamp
fakeroot debian/rules binary
cmake -DCMAKE_INSTALL_PREFIX=/usr .
-- Found nroff here: /usr/bin/nroff
Adding targets: man
-- Library bpp-qt found here:
includes: /usr/include
dynamic libraries: /usr/lib/libbpp-qt.so
-- Library bpp-phyl found here:
includes: /usr/include
dynamic libraries: /usr/lib/libbpp-phyl.so
-- Library bpp-seq found here:
includes: /usr/include
dynamic libraries: /usr/lib/libbpp-seq.so
-- Library bpp-core found here:
includes: /usr/include
dynamic libraries: /usr/lib/libbpp-core.so
-- Configuring done
-- Generating done
-- Build files have been written to: /tmp/buildd/bppphyview-0.3.0
dh_testdir
# Add here commands to compile the arch part of the package.
#/usr/bin/make
touch build-arch-stamp
dh_testdir
dh_testroot
dh_prep -s
dh_installdirs -s
# Add here commands to install the arch part of the package into
# debian/tmp.
/usr/bin/make DESTDIR=/tmp/buildd/bppphyview-0.3.0/debian/bppphyview man install
make[1]: Entering directory '/tmp/buildd/bppphyview-0.3.0'
make[2]: Entering directory '/tmp/buildd/bppphyview-0.3.0'
make[3]: Entering directory '/tmp/buildd/bppphyview-0.3.0'
make[4]: Entering directory '/tmp/buildd/bppphyview-0.3.0'
Scanning dependencies of target man
make[4]: Leaving directory '/tmp/buildd/bppphyview-0.3.0'
make[4]: Entering directory '/tmp/buildd/bppphyview-0.3.0'
make[4]: Leaving directory '/tmp/buildd/bppphyview-0.3.0'
Built target man
make[3]: Leaving directory '/tmp/buildd/bppphyview-0.3.0'
make[2]: Leaving directory '/tmp/buildd/bppphyview-0.3.0'
make[2]: Entering directory '/tmp/buildd/bppphyview-0.3.0'
make[3]: Entering directory '/tmp/buildd/bppphyview-0.3.0'
make[3]: Leaving directory '/tmp/buildd/bppphyview-0.3.0'
make[3]: Entering directory '/tmp/buildd/bppphyview-0.3.0'
make[3]: Leaving directory '/tmp/buildd/bppphyview-0.3.0'
[ 0%] Built target man
make[3]: Entering directory '/tmp/buildd/bppphyview-0.3.0'
[ 14%] Generating moc_TreeSubWindow.cxx
[ 28%] Generating moc_PhyView.cxx
Scanning dependencies of target phyview
make[3]: Leaving directory '/tmp/buildd/bppphyview-0.3.0'
make[3]: Entering directory '/tmp/buildd/bppphyview-0.3.0'
[ 42%] Building CXX object bppPhyView/CMakeFiles/phyview.dir/PhyView.cpp.o
[ 57%] Building CXX object bppPhyView/CMakeFiles/phyview.dir/TreeSubWindow.cpp.o
[ 71%] Building CXX object bppPhyView/CMakeFiles/phyview.dir/TreeCommands.cpp.o
[ 85%] Building CXX object bppPhyView/CMakeFiles/phyview.dir/moc_PhyView.cxx.o
[100%] Building CXX object
bppPhyView/CMakeFiles/phyview.dir/moc_TreeSubWindow.cxx.o
Linking CXX executable phyview
CMakeFiles/phyview.dir/PhyView.cpp.o: In function
`DataLoader::load(bpp::DataTable const*)':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/PhyView.cpp:158: undefined reference to
`bpp::DataTable::getColumnName[abi:cxx11](unsigned long) const'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function
`ComputeGrafenCommand::ComputeGrafenCommand(TreeDocument*, double)':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.h:123: undefined reference
to `bpp::TextTools::toString[abi:cxx11](double, int)'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function `PhyView::removeData()':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/PhyView.cpp:1065: undefined reference
to `bpp::TreeTemplateTools::getNodePropertyNames(bpp::Node const&,
std::vector<std::__cxx11::basic_string<char, std::char_traits<char>,
std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > > >&)'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function `PhyView::renameData()':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/PhyView.cpp:1086: undefined reference
to `bpp::TreeTemplateTools::getNodePropertyNames(bpp::Node const&,
std::vector<std::__cxx11::basic_string<char, std::char_traits<char>,
std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > > >&)'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function `PhyView::attachData()':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/PhyView.cpp:1028: undefined reference
to `bpp::DataTable::read(std::istream&, std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&, bool, int)'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function `PhyView::saveTreeAs()':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/PhyView.cpp:903: undefined reference to
`bpp::IOTreeFactory::NEWICK_FORMAT[abi:cxx11]'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function `void
std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char>
>::_M_construct_aux<char*>(char*, char*, std::__false_type)':
/usr/include/c++/5/bits/basic_string.h:195: undefined reference to
`bpp::IOTreeFactory::NEWICK_FORMAT[abi:cxx11]'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function
`std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char>
>::assign(std::__cxx11::basic_string<char, std::char_traits<char>,
std::allocator<char> > const&)':
/usr/include/c++/5/bits/basic_string.h:1094: undefined reference to
`bpp::IOTreeFactory::NEXUS_FORMAT[abi:cxx11]'
/usr/include/c++/5/bits/basic_string.h:1094: undefined reference to
`bpp::IOTreeFactory::NHX_FORMAT[abi:cxx11]'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function `PhyView::saveTree()':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/PhyView.cpp:885: undefined reference to
`bpp::IOTreeFactory::createWriter(std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&)'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function
`bpp::TreeTemplate<bpp::Node>::getLeavesNames() const':
/usr/include/Bpp/Phyl/TreeTemplate.h:180: undefined reference to
`bpp::TreeTemplateTools::getLeavesNames[abi:cxx11](bpp::Node const&)'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function `PhyView::readTree(QString
const&, std::__cxx11::basic_string<char, std::char_traits<char>,
std::allocator<char> > const&)':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/PhyView.cpp:823: undefined reference to
`bpp::IOTreeFactory::createReader(std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&)'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function `PhyView::openTree()':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/PhyView.cpp:855: undefined reference to
`bpp::IOTreeFactory::NEWICK_FORMAT[abi:cxx11]'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function `void
std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char>
>::_M_construct_aux<char*>(char*, char*, std::__false_type)':
/usr/include/c++/5/bits/basic_string.h:195: undefined reference to
`bpp::IOTreeFactory::NEWICK_FORMAT[abi:cxx11]'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function
`std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char>
>::assign(std::__cxx11::basic_string<char, std::char_traits<char>,
std::allocator<char> > const&)':
/usr/include/c++/5/bits/basic_string.h:1094: undefined reference to
`bpp::IOTreeFactory::NEXUS_FORMAT[abi:cxx11]'
/usr/include/c++/5/bits/basic_string.h:1094: undefined reference to
`bpp::IOTreeFactory::NHX_FORMAT[abi:cxx11]'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function
`TranslateNameChooser::translateTree(bpp::TreeTemplate<bpp::Node>&)':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/PhyView.cpp:107: undefined reference to
`bpp::DataTable::read(std::istream&, std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&, bool, int)'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/PhyView.cpp:119: undefined reference to
`bpp::DataTable::setColumnNames(std::vector<std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> >,
std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>,
std::allocator<char> > > > const&)'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/PhyView.cpp:123: undefined reference to
`bpp::DataTable::getColumnName[abi:cxx11](unsigned long) const'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/PhyView.cpp:122: undefined reference to
`bpp::DataTable::getColumnName[abi:cxx11](unsigned long) const'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function
`bpp::TreeTemplate<bpp::Node>::getLeavesNames() const':
/usr/include/Bpp/Phyl/TreeTemplate.h:180: undefined reference to
`bpp::TreeTemplateTools::getLeavesNames[abi:cxx11](bpp::Node const&)'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function
`bpp::TreeTemplate<bpp::Node>::unroot()':
/usr/include/Bpp/Phyl/TreeTemplate.h:244: undefined reference to
`bpp::UnrootedTreeException::UnrootedTreeException(std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&, bpp::Tree const*)'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function
`bpp::TreeTemplateTools::getLeafId(bpp::Node const&,
std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >
const&)':
/usr/include/Bpp/Phyl/TreeTemplateTools.h:168: undefined reference to
`bpp::NodeNotFoundException::NodeNotFoundException(std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&,
std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >
const&)'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function
`TreeDocument::setFile(std::__cxx11::basic_string<char, std::char_traits<char>,
std::allocator<char> > const&, std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&)':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeDocument.h:118: undefined reference
to `bpp::FileTools::getFileName(std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&, char)'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function
`SetLengthCommand::SetLengthCommand(TreeDocument*, double)':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.h:101: undefined reference
to `bpp::TextTools::toString[abi:cxx11](double, int)'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function
`bpp::TreeCanvas::collapseNode(int, bool)':
/usr/include/Bpp/Qt/Tree/TreeCanvas.h:145: undefined reference to
`bpp::NodeNotFoundException::NodeNotFoundException(std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&, int)'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function
`bpp::TreeCanvas::isNodeCollapsed(int) const':
/usr/include/Bpp/Qt/Tree/TreeCanvas.h:155: undefined reference to
`bpp::NodeNotFoundException::NodeNotFoundException(std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&, int)'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function
`bpp::TreeTemplate<bpp::Node>::getNode(int, bool) const':
/usr/include/Bpp/Phyl/TreeTemplate.h:441: undefined reference to
`bpp::TextTools::toString[abi:cxx11](int)'
/usr/include/Bpp/Phyl/TreeTemplate.h:449: undefined reference to
`bpp::TextTools::toString[abi:cxx11](int)'
/usr/include/Bpp/Phyl/TreeTemplate.h:449: undefined reference to
`bpp::NodeNotFoundException::NodeNotFoundException(std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&,
std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >
const&)'
/usr/include/Bpp/Phyl/TreeTemplate.h:442: undefined reference to
`bpp::TextTools::toString[abi:cxx11](int)'
/usr/include/Bpp/Phyl/TreeTemplate.h:442: undefined reference to
`bpp::NodeNotFoundException::NodeNotFoundException(std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&,
std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >
const&)'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function
`bpp::TreeTemplate<bpp::Node>::getNode(std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&) const':
/usr/include/Bpp/Phyl/TreeTemplate.h:466: undefined reference to
`bpp::NodeNotFoundException::NodeNotFoundException(std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&,
std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >
const&)'
/usr/include/Bpp/Phyl/TreeTemplate.h:467: undefined reference to
`bpp::NodeNotFoundException::NodeNotFoundException(std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&,
std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >
const&)'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function
`bpp::TreeTemplate<bpp::Node>::getNode(int, bool)':
/usr/include/Bpp/Phyl/TreeTemplate.h:424: undefined reference to
`bpp::TextTools::toString[abi:cxx11](int)'
/usr/include/Bpp/Phyl/TreeTemplate.h:432: undefined reference to
`bpp::TextTools::toString[abi:cxx11](int)'
/usr/include/Bpp/Phyl/TreeTemplate.h:432: undefined reference to
`bpp::NodeNotFoundException::NodeNotFoundException(std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&,
std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >
const&)'
/usr/include/Bpp/Phyl/TreeTemplate.h:425: undefined reference to
`bpp::TextTools::toString[abi:cxx11](int)'
/usr/include/Bpp/Phyl/TreeTemplate.h:425: undefined reference to
`bpp::NodeNotFoundException::NodeNotFoundException(std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&,
std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >
const&)'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function
`OrderCommand::OrderCommand(TreeDocument*, int, bool)':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.h:156: undefined reference
to `bpp::TextTools::toString[abi:cxx11](int)'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function
`DeleteSubtreeCommand::DeleteSubtreeCommand(TreeDocument*, int)':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.h:200: undefined reference
to `bpp::TextTools::toString[abi:cxx11](int)'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function
`InsertSubtreeAtNodeCommand::InsertSubtreeAtNodeCommand(TreeDocument*, int,
bpp::Node*)':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.h:212: undefined reference
to `bpp::TextTools::toString[abi:cxx11](int)'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function
`SampleSubtreeCommand::SampleSubtreeCommand(TreeDocument*, int, unsigned int)':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.h:320: undefined reference
to `bpp::TextTools::toString[abi:cxx11](int)'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.h:324: undefined reference
to `bpp::TreeTemplateTools::getLeavesNames[abi:cxx11](bpp::Node const&)'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function
`OutgroupCommand::OutgroupCommand(TreeDocument*, int)':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.h:178: undefined reference
to `bpp::TextTools::toString[abi:cxx11](int)'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function
`RerootCommand::RerootCommand(TreeDocument*, int)':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.h:167: undefined reference
to `bpp::TextTools::toString[abi:cxx11](int)'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function
`bpp::TreeTemplate<bpp::Node>::swapNodes(int, unsigned long, unsigned long)':
/usr/include/Bpp/Phyl/TreeTemplate.h:391: undefined reference to
`bpp::NodeNotFoundException::NodeNotFoundException(std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&,
std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >
const&)'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function
`SwapCommand::SwapCommand(TreeDocument*, int, unsigned int, unsigned int, int,
int)':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.h:145: undefined reference
to `bpp::TextTools::toString[abi:cxx11](int)'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.h:145: undefined reference
to `bpp::TextTools::toString[abi:cxx11](int)'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function
`bpp::TreeTemplate<bpp::Node>::getNode(std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&)':
/usr/include/Bpp/Phyl/TreeTemplate.h:457: undefined reference to
`bpp::NodeNotFoundException::NodeNotFoundException(std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&,
std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >
const&)'
/usr/include/Bpp/Phyl/TreeTemplate.h:458: undefined reference to
`bpp::NodeNotFoundException::NodeNotFoundException(std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&,
std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >
const&)'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function
`bpp::Node::addSon(bpp::Node*)':
/usr/include/Bpp/Phyl/Node.h:425: undefined reference to
`bpp::NodePException::NodePException(std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&, bpp::Node const*)'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function
`InsertSubtreeOnBranchCommand::InsertSubtreeOnBranchCommand(TreeDocument*, int,
bpp::Node*)':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.h:225: undefined reference
to `bpp::TextTools::toString[abi:cxx11](int)'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function `main':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/PhyView.cpp:1150: undefined reference
to `bpp::IOTreeFactory::NEWICK_FORMAT[abi:cxx11]'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function `void
std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char>
>::_M_construct_aux<char*>(char*, char*, std::__false_type)':
/usr/include/c++/5/bits/basic_string.h:195: undefined reference to
`bpp::IOTreeFactory::NEWICK_FORMAT[abi:cxx11]'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function
`std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char>
>::assign(std::__cxx11::basic_string<char, std::char_traits<char>,
std::allocator<char> > const&)':
/usr/include/c++/5/bits/basic_string.h:1094: undefined reference to
`bpp::IOTreeFactory::NHX_FORMAT[abi:cxx11]'
/usr/include/c++/5/bits/basic_string.h:1094: undefined reference to
`bpp::IOTreeFactory::NEWICK_FORMAT[abi:cxx11]'
CMakeFiles/phyview.dir/TreeSubWindow.cpp.o: In function `QString
bpp::QtTools::toQt<double>(bpp::Number<double> const&)':
/usr/include/Bpp/Qt/QtTools.h:83: undefined reference to
`bpp::TextTools::toString[abi:cxx11](double, int)'
CMakeFiles/phyview.dir/TreeSubWindow.cpp.o: In function
`TreeSubWindow::updateTable()':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeSubWindow.cpp:107: undefined
reference to `bpp::TreeTemplateTools::getNodePropertyNames(bpp::Node const&,
std::vector<std::__cxx11::basic_string<char, std::char_traits<char>,
std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > > >&)'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeSubWindow.cpp:109: undefined
reference to `bpp::TreeTemplateTools::getBranchPropertyNames(bpp::Node const&,
std::vector<std::__cxx11::basic_string<char, std::char_traits<char>,
std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > > >&)'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeSubWindow.cpp:122: undefined
reference to `bpp::TextTools::toString[abi:cxx11](int)'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeSubWindow.cpp:133: undefined
reference to `bpp::TextTools::toString[abi:cxx11](double, int)'
CMakeFiles/phyview.dir/TreeSubWindow.cpp.o: In function
`ChangeNodeNameCommand::ChangeNodeNameCommand(TreeDocument*, int,
std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >
const&)':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.h:266: undefined reference
to `bpp::TextTools::toString[abi:cxx11](int)'
CMakeFiles/phyview.dir/TreeSubWindow.cpp.o: In function
`ChangeBranchLengthCommand::ChangeBranchLengthCommand(TreeDocument*, int,
double)':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.h:254: undefined reference
to `bpp::TextTools::toString[abi:cxx11](double, int)'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.h:254: undefined reference
to `bpp::TextTools::toString[abi:cxx11](int)'
CMakeFiles/phyview.dir/TreeCommands.cpp.o: In function
`AttachDataCommand::addProperties_(bpp::Node*, bpp::DataTable const&, unsigned
int, bool)':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.cpp:75: undefined
reference to `bpp::TextTools::toString[abi:cxx11](int)'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.cpp:77: undefined
reference to `bpp::DataTable::operator()[abi:cxx11](unsigned long, unsigned
long) const'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.cpp:80: undefined
reference to `bpp::DataTable::operator()[abi:cxx11](unsigned long, unsigned
long) const'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.cpp:80: undefined
reference to `bpp::DataTable::getColumnName[abi:cxx11](unsigned long) const'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.cpp:90: undefined
reference to `bpp::DataTable::operator()[abi:cxx11](unsigned long, unsigned
long) const'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.cpp:93: undefined
reference to `bpp::DataTable::operator()[abi:cxx11](unsigned long, unsigned
long) const'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.cpp:93: undefined
reference to `bpp::DataTable::getColumnName[abi:cxx11](unsigned long) const'
CMakeFiles/phyview.dir/TreeCommands.cpp.o: In function
`TranslateNodeNamesCommand::TranslateNodeNamesCommand(TreeDocument*,
bpp::DataTable const&, unsigned int, unsigned int)':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.cpp:45: undefined
reference to `bpp::DataTable::getColumnName[abi:cxx11](unsigned long) const'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.cpp:45: undefined
reference to `bpp::DataTable::getColumnName[abi:cxx11](unsigned long) const'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.cpp:51: undefined
reference to `bpp::DataTable::operator()[abi:cxx11](unsigned long, unsigned
long) const'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.cpp:51: undefined
reference to `bpp::DataTable::operator()[abi:cxx11](unsigned long, unsigned
long) const'
collect2: error: ld returned 1 exit status
bppPhyView/CMakeFiles/phyview.dir/build.make:203: recipe for target
'bppPhyView/phyview' failed
make[3]: *** [bppPhyView/phyview] Error 1
make[3]: Leaving directory '/tmp/buildd/bppphyview-0.3.0'
CMakeFiles/Makefile2:299: recipe for target
'bppPhyView/CMakeFiles/phyview.dir/all' failed
make[2]: *** [bppPhyView/CMakeFiles/phyview.dir/all] Error 2
make[2]: Leaving directory '/tmp/buildd/bppphyview-0.3.0'
Makefile:136: recipe for target 'all' failed
make[1]: *** [all] Error 2
make[1]: Leaving directory '/tmp/buildd/bppphyview-0.3.0'
debian/rules:103: recipe for target 'install-arch' failed
make: *** [install-arch] Error 2
dpkg-buildpackage: error: fakeroot debian/rules binary gave error exit status 2
E: Failed autobuilding of package
I: unmounting /sys filesystem
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: cleaning the build env
I: removing directory /var/cache/pbuilder/build//48909 and its subdirectories
