Your message dated Thu, 03 Sep 2015 10:00:25 +0000 with message-id <e1zxrjh-0004l6...@franck.debian.org> and subject line Bug#796854: fixed in openbabel 2.3.2+dfsg-2.2 has caused the Debian Bug report #796854, regarding openbabel: transition needed for g++-5 ABIs to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 796854: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=796854 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: openbabel Version: 2.3.2+dfsg-2.1 Severity: serious Justification: breaks reverse-dependencies Tags: patch Background[1]: libstdc++6 introduces a new ABI to conform to the C++11 standard, but keeps the old ABI to not break existing binaries. Packages which are built with g++-5 from experimental (not the one from testing/unstable) are using the new ABI. Libraries built from this source package export some of the new __cxx11 or B5cxx11 symbols, dropping other symbols. If these symbols are part of the API of the library, then this rebuild with g++-5 will trigger a transition for the library. In the case of openbabel, std::string appears in header files that get installed, so it seems very likely that a transition is needed. The transition consists of renaming the library package containing libopenbabel.so.4 from "libopenbabel4" to "libopenbabel4v5". A patch is available in Ubuntu, <http://patches.ubuntu.com/o/openbabel/openbabel_2.3.2+dfsg-2.1ubuntu1.patch>. These follow-up transitions for libstdc++ are not going through exactly the normal transition procedure, because many entangled transitions are going on at the same time, and the usual ordered transition procedure does not scale that far. When all the libraries on which openbabel depends have started their transitions if required, openbabel should do the same, closing this bug; the release team will deal with binNMUs as needed. In the case of openbabel, libwxgtk3.0-dev has already started its transition, and libeigen3-dev appears to be unaffected, so openbabel is ready for its rename now. The package might be NMU'd in the near future, with a patch very similar to the one in Ubuntu, if its maintainers do not respond; the release team have declared a 2 day NMU delay[2] for packages involved in the libstdc++ transition, in order to get unstable back to a usable state in a finite time. S [1] https://wiki.debian.org/GCC5#libstdc.2B-.2B-_ABI_transition [2] https://lists.debian.org/debian-devel-announce/2015/08/msg00000.html
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--- Begin Message ---Source: openbabel Source-Version: 2.3.2+dfsg-2.2 We believe that the bug you reported is fixed in the latest version of openbabel, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 796...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Simon McVittie <s...@debian.org> (supplier of updated openbabel package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Mon, 31 Aug 2015 22:18:57 +0100 Source: openbabel Binary: openbabel openbabel-gui libopenbabel-dev libopenbabel4v5 libopenbabel-doc python-openbabel libchemistry-openbabel-perl openbabel-dbg Architecture: all amd64 source Version: 2.3.2+dfsg-2.2 Distribution: unstable Urgency: medium Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org> Changed-By: Simon McVittie <s...@debian.org> Closes: 796854 Description: libchemistry-openbabel-perl - Chemical toolbox library (perl bindings) libopenbabel4v5 - Chemical toolbox library libopenbabel-dev - Chemical toolbox library (development files) libopenbabel-doc - Chemical toolbox library (documentation) openbabel - Chemical toolbox utilities (cli) openbabel-dbg - Chemical toolbox library (debugging symbols) openbabel-gui - Chemical toolbox utilities (graphical user interface) python-openbabel - Chemical toolbox library (python bindings) Changes: openbabel (2.3.2+dfsg-2.2) unstable; urgency=medium . * Non-maintainer upload. * Apply Ubuntu patch for the libstdc++ transition (Closes: #796854) . [ Matthias Klose ] * Rename libopenbabel4 to libopenbabel4v5, follow-up transition to the libstdc++6 transition. * Add Conflict/Replaces to the old library. 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