Your message dated Tue, 01 Sep 2015 10:00:34 +0000
with message-id <e1zwimk-0006zq...@franck.debian.org>
and subject line Bug#796732: fixed in cassiopee 1.0.3+dfsg-3
has caused the Debian Bug report #796732,
regarding cassiopee: library transition needed with GCC 5 as default
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
796732: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=796732
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: cassiopee
Version: 1.0.3+dfsg-2
Severity: serious
Tags: sid stretch
User: debian-...@lists.debian.org
Usertags: libstdc++-cxx11
Hi,
your library exposes std::string or std::list in its public API, and
therefore the library package needs to be renamed.
Specifically the use of std::list in TreeNode, CassieIndexer and
CassieSearch is likely to break ABI.
Cheers,
Julien
The following is a form letter:
Background [1]: libstdc++6 introduces a new ABI to conform to the
C++11 standard, but keeps the old ABI to not break existing binaries.
Packages which are built with g++-5 are using the new ABI. Libraries built
from this source package export some of the new __cxx11 or B5cxx11 symbols, and
dropping other symbols. If these symbols are part of the API of the library,
then this rebuild with g++-5 will trigger a transition for the library.
What is needed:
- Rebuild the library using g++/g++-5. Note that most likely all C++
libraries within the build dependencies need a rebuild too. You can
find the log for a rebuild in
https://people.debian.org/~doko/logs/gcc5-20150813/
Search for "BEGIN GCC CXX11" in the log.
- Decide if the symbols matching __cxx11 or B5cxx11 are part of the
library API, and are used by the reverse dependencies of the
library.
- If there are no symbols matching __cxx11 or B5cxx11 in the symbols
forming the library API, you should close this issue with a short
explanation.
- If there are no reverse dependencies, it should be the package
maintainers decision if a transition is needed. However this might
break software which is not in the Debian archive, and built
against these packages.
- If a library transition is needed, please prepare for the change.
Rename the library package, append "v5" to the name of the package
(e.g. libfoo2 -> libfoo2v5). Such a change can be avoided, if you
have a soversion bump and you upload this version instead of the
renamed package. Prepare a patch and attach it to this issue (mark
this issue with patch), so that it is possible to NMU such a
package. We'll probably have more than hundred transitions
triggered. Then reassign the issue to release.debian.org and
properly tag it as a transition issue, by sending an email to
cont...@bugs.debian.org:
user release.debian....@packages.debian.org
usertag <this issue> + transition
block <this issue> by 790756
reassign <this issue> release.debian.org
- If unsure if a transition is needed, please tag the issue with help
to ask for feedback from other Debian developers.
The libstdc++6 transition will be a large one, and it will come with a
lot of pain. Please help it by preparing the follow-up transitions.
[1] https://wiki.debian.org/GCC5#libstdc.2B-.2B-_ABI_transition
signature.asc
Description: Digital signature
--- End Message ---
--- Begin Message ---
Source: cassiopee
Source-Version: 1.0.3+dfsg-3
We believe that the bug you reported is fixed in the latest version of
cassiopee, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 796...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated cassiopee package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Mon, 31 Aug 2015 08:28:40 +0200
Source: cassiopee
Binary: cassiopee libcassie-doc libcassie1v5 libcassie-dev
Architecture: source amd64 all
Version: 1.0.3+dfsg-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
cassiopee - index and search tool in genomic sequences
libcassie-dev - library and headers for development
libcassie-doc - documentation for cassiopee library
libcassie1v5 - library implementating search algorithms
Closes: 796732
Changes:
cassiopee (1.0.3+dfsg-3) unstable; urgency=medium
.
* Team upload
* Gcc-5 transition
Closes: #796732
* Enhance long description of doc package
* cme fix dpkg-control
* DEP5
* Add doc-base control file
* Enhance manpages
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Files:
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cassiopee_1.0.3+dfsg-3.dsc
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cassiopee_1.0.3+dfsg-3.debian.tar.xz
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cassiopee_1.0.3+dfsg-3_amd64.deb
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libcassie-dev_1.0.3+dfsg-3_amd64.deb
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libcassie-doc_1.0.3+dfsg-3_all.deb
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