Your message dated Wed, 26 Aug 2015 16:00:23 +0000
with message-id <e1zud7f-0006kk...@franck.debian.org>
and subject line Bug#791267: fixed in relion 1.3+dfsg-3
has caused the Debian Bug report #791267,
regarding relion: library transition may be needed when GCC 5 is the default
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
791267: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=791267
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:relion
Version: 1.3+dfsg-2
Severity: important
Tags: sid stretch
User: debian-...@lists.debian.org
Usertags: libstdc++-cxx11
Background [1]: libstdc++6 introduces a new ABI to conform to the
C++11 standard, but keeps the old ABI to not break existing binaries.
Packages which are built with g++-5 from experimental (not the one
from testing/unstable) are using the new ABI. Libraries built from
this source package export some of the new __cxx11 or B5cxx11 symbols,
and dropping other symbols. If these symbols are part of the API of
the library, then this rebuild with g++-5 will trigger a transition
for the library.
What is needed:
- Rebuild the library using g++/g++-5 from experimental. Note that
most likely all C++ libraries within the build dependencies need
a rebuild too. You can find the log for a rebuild in
https://people.debian.org/~doko/logs/gcc5-20150701/
Search for "BEGIN GCC CXX11" in the log.
- Decide if the symbols matching __cxx11 or B5cxx11 are part of the
library API, and are used by the reverse dependencies of the
library.
- If there are no symbols matching __cxx11 or B5cxx11 in the symbols
forming the library API, you should close this issue with a short
explanation.
- If there are no reverse dependencies, it should be the package
maintainers decision if a transition is needed. However this might
break software which is not in the Debian archive, and built
against these packages.
- If a library transition is needed, please prepare for the change.
Rename the library package, append "v5" to the name of the package
(e.g. libfoo2 -> libfoo2v5). Such a change can be avoided, if you
have a soversion bump and you upload this version instead of the
renamed package. Prepare a patch and attach it to this issue (mark
this issue with patch), so that it is possible to NMU such a
package. We'll probably have more than hundred transitions
triggered. Then reassign the issue to release.debian.org and
properly tag it as a transition issue, by sending an email to
cont...@bugs.debian.org:
user release.debian....@packages.debian.org
usertag <this issue> + transition
block <this issue> by 790756
reassign <this issue> release.debian.org
- If unsure if a transition is needed, please tag the issue with help
to ask for feedback from other Debian developers.
The libstdc++6 transition will be a large one, and it will come with a
lot of pain. Please help it by preparing the follow-up transitions.
[1] https://wiki.debian.org/GCC5#libstdc.2B-.2B-_ABI_transition
--- End Message ---
--- Begin Message ---
Source: relion
Source-Version: 1.3+dfsg-3
We believe that the bug you reported is fixed in the latest version of
relion, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 791...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Roland Fehrenbacher <r...@q-leap.de> (supplier of updated relion package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Mon, 24 Aug 2015 16:08:36 +0000
Source: relion
Binary: relion-bin relion-bin+mpi relion-bin+gui relion-bin+mpi+gui
librelion-dev-common librelion-dev librelion+mpi-dev librelion+gui-dev
librelion+mpi+gui-dev librelion-1.3-1v5 librelion+mpi-1.3-1v5
librelion+gui-1.3-1v5 librelion+mpi+gui-1.3-1v5
Architecture: source amd64 all
Version: 1.3+dfsg-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Roland Fehrenbacher <r...@q-leap.de>
Description:
librelion+gui-1.3-1v5 - RELION dynnamic library (3D reconstructions in
cryo-electron micr
librelion+gui-dev - C++ API for RELION (3D reconstructions in cryo-electron
microscop
librelion+mpi+gui-1.3-1v5 - RELION dynnamic library (3D reconstructions in
cryo-electron micr
librelion+mpi+gui-dev - C++ API for RELION (3D reconstructions in
cryo-electron microscop
librelion+mpi-1.3-1v5 - RELION dynnamic library (3D reconstructions in
cryo-electron micr
librelion+mpi-dev - C++ API for RELION (3D reconstructions in cryo-electron
microscop
librelion-1.3-1v5 - RELION dynnamic library (3D reconstructions in
cryo-electron micr
librelion-dev - C++ API for RELION (3D reconstructions in cryo-electron
microscop
librelion-dev-common - C++ API for RELION (3D reconstructions in cryo-electron
microscop
relion-bin - toolkit for 3D reconstructions in cryo-electron microscopy
relion-bin+gui - parallel toolkit for 3D reconstructions in cryo-electron
microsco
relion-bin+mpi - parallel toolkit for 3D reconstructions in cryo-electron
microsco
relion-bin+mpi+gui - parallel toolkit for 3D reconstructions in cryo-electron
microsco
Closes: 791267
Changes:
relion (1.3+dfsg-3) unstable; urgency=medium
.
[ Andreas Tille ]
* Rename library packages for g++5 ABI transition.
(Thanks for the patch to Iain Lane <i...@orangesquash.org.uk>)
Closes: #791267
.
[ Roland Fehrenbacher ]
* Fix permissions of d/lib*.install files (needed for dh-exec)
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